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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051124 ID=TCONS_00051124|Name=TCONS_00051124|organism=Clytia hemisphaerica|type=transcript|length=1830bp
TTTGAGGGATCCTTCTTTGATCCTTTGCCCTTCCATAATGTTCTGAGAAG
AGATTGACCCCAAGAGATAGGCAGATCATGCCCAGACCACAATTGGTTAT
TGGTGATTCTGTGGATCACTTCAAGCATAATAGGGTGAGTGCATCGTTTC
AGTAGTTCTGGCTCAATATCATTACTGgctttgttgtttttcaatttttg
tataTGAGCGTGTATTTCATCGATGGAGGGAGGAGTGTCATTGATATCAG
TAAATTCTGAAATGTCTTGTAGATCCTTAACAAATAAAGGAATATTTTCG
ATCATTTCATCAGGTGTGAACTCAATGGAGAGATCCTCTGGGTTGAAGTG
TGACTTGAAATGGTCATAGAGCTTATCTGTTGGACACGAGTTATGTGTAT
GTCTGAGTGTACATTCCTGTCTTTTAGCTTTAGTAAAGAGTTTCTCTATT
TCCTTGTTAATCATATAAGTGTTCATTGTTTCAGCTTCATGTTTGAAGTA
CTGGTCTTTAAGATAGCGAACACGATATCTGATCTTTTTACGTATACGTT
TCAGTTCTTCTGGACTTGAAGAGCAGGATACTAGTTCTGATTTGGTTACA
AATAATTGCTTTAGTTTCTCGTCAGATCTCCAGGGAGGAGATGAGCTATC
AACAATGACGGTGGGGAAAACATTCTCAGCACTTTCCCGCAATGCATTTA
TAATAGAGTCATTGAGAAACTTATTGGATTGAGATTGAGTTACGTCATCT
GCTTCAAGTTTTCCTGTGACATTATTAGAAAACCGGTCGGTCATCTCTTG
AGTAATCGCTGCAAAGTTTATTTTCTGTTTACGAGTGCGCTTTTGATGCT
TTTTGAACCGAGCTTTCTTTGATGAGGGTGTGGATAGTTTTGCAATTACA
AGTCTATGGTCACTATCAAAATCAAACGAATTAAACACACGACAGTTCAT
GACAAATTGCCGGAGCCAGCTTGAGCATAAGATAAAATCATACACTTTTT
TAGTTACTCCATCATTCGAGTGCCAGGTTATACGTCTGCACTTTTTGTGT
GTAAACCACGTATTGAGAACAGAAAGTTTGTTGGTGTTGAAGAAGCCGTG
GAATCGCAAACCGTTATCATTGACAGTCAGTTCATCAATGACAGAGCCTT
CTCGTAACGATGTATTCGACCAACATGCCGATGTTGTAGCATTGAAGTCA
CCAATACAGATaaccttttgtttctttttaaccAATTTGAGTTGTTTATT
TAGCTGTCGATAGaacacaatttttgaagactCTGTACTATCTTCAGTGG
GTGCATAACAGTTTATGATTTTCAATGAGCAACCACGAACTATAACATCT
GCTGTGATTATTCGAGCATTAATTGGGGTAATCTCAATTATTTCTATAGA
TGGATCAATTTTGATGACAATGCCGACACCATGAGTTCGTTTACTAACAT
ATCCTGACCAGTACACTTCGTATTTACTACCAGAGTCTGATTTAATAACT
GCTGAATCATTGTTGAGTCGACAAACCTCCTGTAAGCCGCATATCGAAAG
GTTGGCTTTACTAATTTCATTAACAACACGTTCAAGTTTTTCGTCATCCT
TTCCAGTCCGTATATTAAtcgttccaatgttccaattgTAATAAGAcatg
aatttgaaatttgaaagtttttcaaccAAATTTAGGGGTGTGGGCGATTA
GTTCATCATCCCGAGACAAATAAATTGGTCACCACATCATCATCAGTGTT
GGTTGTCGATATTTAGGAGTGGTGGATCACCCCTATCACCCAGTTGTGAT
GGTAGATTTTCGTTCACCACCActcctttc Run BLAST on NCBI protein sequence of TCONS_00051124-protein >TCONS_00051124-protein ID=TCONS_00051124-protein|Name=TCONS_00051124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp
MSYYNWNIGTINIRTGKDDEKLERVVNEISKANLSICGLQEVCRLNNDSA
VIKSDSGSKYEVYWSGYVSKRTHGVGIVIKIDPSIEIIEITPINARIITA
DVIVRGCSLKIINCYAPTEDSTESSKIVFYRQLNKQLKLVKKKQKVICIG
DFNATTSACWSNTSLREGSVIDELTVNDNGLRFHGFFNTNKLSVLNTWFT
HKKCRRITWHSNDGVTKKVYDFILCSSWLRQFVMNCRVFNSFDFDSDHRL
VIAKLSTPSSKKARFKKHQKRTRKQKINFAAITQEMTDRFSNNVTGKLEA
DDVTQSQSNKFLNDSIINALRESAENVFPTVIVDSSSPPWRSDEKLKQLF
VTKSELVSCSSSPEELKRIRKKIRYRVRYLKDQYFKHEAETMNTYMINKE
IEKLFTKAKRQECTLRHTHNSCPTDKLYDHFKSHFNPEDLSIEFTPDEMI
ENIPLFVKDLQDISEFTDINDTPPSIDEIHAHIQKLKNNKASNDIEPELL
KRCTHPIMLEVIHRITNNQLWSGHDLPISWGQSLLRTLWKGKGSKKDPS Run BLAST on NCBI transcript from alignment at scaffold_197:3993..5822 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051124 ID=TCONS_00051124|Name=TCONS_00051124|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at scaffold_197:3993..5822 (Clytia hemisphaerica)
gaaaggagTGGTGGTGAACGAAAATCTACCATCACAACTGGGTGATAGGG
GTGATCCACCACTCCTAAATATCGACAACCAACACTGATGATGATGTGGT
GACCAATTTATTTGTCTCGGGATGATGAACTAATCGCCCACACCCCTAAA
TTTggttgaaaaactttcaaatttcaaattcatgTCTTATTAcaattgga
acattggaacgaTTAATATACGGACTGGAAAGGATGACGAAAAACTTGAA
CGTGTTGTTAATGAAATTAGTAAAGCCAACCTTTCGATATGCGGCTTACA
GGAGGTTTGTCGACTCAACAATGATTCAGCAGTTATTAAATCAGACTCTG
GTAGTAAATACGAAGTGTACTGGTCAGGATATGTTAGTAAACGAACTCAT
GGTGTCGGCATTGTCATCAAAATTGATCCATCTATAGAAATAATTGAGAT
TACCCCAATTAATGCTCGAATAATCACAGCAGATGTTATAGTTCGTGGTT
GCTCATTGAAAATCATAAACTGTTATGCACCCACTGAAGATAGTACAGag
tcttcaaaaattgtgttCTATCGACAGCTAAATAAACAACTCAAATTggt
taaaaagaaacaaaaggttATCTGTATTGGTGACTTCAATGCTACAACAT
CGGCATGTTGGTCGAATACATCGTTACGAGAAGGCTCTGTCATTGATGAA
CTGACTGTCAATGATAACGGTTTGCGATTCCACGGCTTCTTCAACACCAA
CAAACTTTCTGTTCTCAATACGTGGTTTACACACAAAAAGTGCAGACGTA
TAACCTGGCACTCGAATGATGGAGTAACTAAAAAAGTGTATGATTTTATC
TTATGCTCAAGCTGGCTCCGGCAATTTGTCATGAACTGTCGTGTGTTTAA
TTCGTTTGATTTTGATAGTGACCATAGACTTGTAATTGCAAAACTATCCA
CACCCTCATCAAAGAAAGCTCGGTTCAAAAAGCATCAAAAGCGCACTCGT
AAACAGAAAATAAACTTTGCAGCGATTACTCAAGAGATGACCGACCGGTT
TTCTAATAATGTCACAGGAAAACTTGAAGCAGATGACGTAACTCAATCTC
AATCCAATAAGTTTCTCAATGACTCTATTATAAATGCATTGCGGGAAAGT
GCTGAGAATGTTTTCCCCACCGTCATTGTTGATAGCTCATCTCCTCCCTG
GAGATCTGACGAGAAACTAAAGCAATTATTTGTAACCAAATCAGAACTAG
TATCCTGCTCTTCAAGTCCAGAAGAACTGAAACGTATACGTAAAAAGATC
AGATATCGTGTTCGCTATCTTAAAGACCAGTACTTCAAACATGAAGCTGA
AACAATGAACACTTATATGATTAACAAGGAAATAGAGAAACTCTTTACTA
AAGCTAAAAGACAGGAATGTACACTCAGACATACACATAACTCGTGTCCA
ACAGATAAGCTCTATGACCATTTCAAGTCACACTTCAACCCAGAGGATCT
CTCCATTGAGTTCACACCTGATGAAATGATCGAAAATATTCCTTTATTTG
TTAAGGATCTACAAGACATTTCAGAATTTACTGATATCAATGACACTCCT
CCCTCCATCGATGAAATACACGCTCAtatacaaaaattgaaaaacaacaa
agcCAGTAATGATATTGAGCCAGAACTACTGAAACGATGCACTCACCCTA
TTATGCTTGAAGTGATCCACAGAATCACCAATAACCAATTGTGGTCTGGG
CATGATCTGCCTATCTCTTGGGGTCAATCTCTTCTCAGAACATTATGGAA
GGGCAAAGGATCAAAGAAGGATCCCTCAAA Coding sequence (CDS) from alignment at scaffold_197:3993..5822 >TCONS_00051124 ID=TCONS_00051124|Name=TCONS_00051124|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_197:3993..5822 (Clytia hemisphaerica)
atgTCTTATTAcaattggaacattggaacgaTTAATATACGGACTGGAAA
GGATGACGAAAAACTTGAACGTGTTGTTAATGAAATTAGTAAAGCCAACC
TTTCGATATGCGGCTTACAGGAGGTTTGTCGACTCAACAATGATTCAGCA
GTTATTAAATCAGACTCTGGTAGTAAATACGAAGTGTACTGGTCAGGATA
TGTTAGTAAACGAACTCATGGTGTCGGCATTGTCATCAAAATTGATCCAT
CTATAGAAATAATTGAGATTACCCCAATTAATGCTCGAATAATCACAGCA
GATGTTATAGTTCGTGGTTGCTCATTGAAAATCATAAACTGTTATGCACC
CACTGAAGATAGTACAGagtcttcaaaaattgtgttCTATCGACAGCTAA
ATAAACAACTCAAATTggttaaaaagaaacaaaaggttATCTGTATTGGT
GACTTCAATGCTACAACATCGGCATGTTGGTCGAATACATCGTTACGAGA
AGGCTCTGTCATTGATGAACTGACTGTCAATGATAACGGTTTGCGATTCC
ACGGCTTCTTCAACACCAACAAACTTTCTGTTCTCAATACGTGGTTTACA
CACAAAAAGTGCAGACGTATAACCTGGCACTCGAATGATGGAGTAACTAA
AAAAGTGTATGATTTTATCTTATGCTCAAGCTGGCTCCGGCAATTTGTCA
TGAACTGTCGTGTGTTTAATTCGTTTGATTTTGATAGTGACCATAGACTT
GTAATTGCAAAACTATCCACACCCTCATCAAAGAAAGCTCGGTTCAAAAA
GCATCAAAAGCGCACTCGTAAACAGAAAATAAACTTTGCAGCGATTACTC
AAGAGATGACCGACCGGTTTTCTAATAATGTCACAGGAAAACTTGAAGCA
GATGACGTAACTCAATCTCAATCCAATAAGTTTCTCAATGACTCTATTAT
AAATGCATTGCGGGAAAGTGCTGAGAATGTTTTCCCCACCGTCATTGTTG
ATAGCTCATCTCCTCCCTGGAGATCTGACGAGAAACTAAAGCAATTATTT
GTAACCAAATCAGAACTAGTATCCTGCTCTTCAAGTCCAGAAGAACTGAA
ACGTATACGTAAAAAGATCAGATATCGTGTTCGCTATCTTAAAGACCAGT
ACTTCAAACATGAAGCTGAAACAATGAACACTTATATGATTAACAAGGAA
ATAGAGAAACTCTTTACTAAAGCTAAAAGACAGGAATGTACACTCAGACA
TACACATAACTCGTGTCCAACAGATAAGCTCTATGACCATTTCAAGTCAC
ACTTCAACCCAGAGGATCTCTCCATTGAGTTCACACCTGATGAAATGATC
GAAAATATTCCTTTATTTGTTAAGGATCTACAAGACATTTCAGAATTTAC
TGATATCAATGACACTCCTCCCTCCATCGATGAAATACACGCTCAtatac
aaaaattgaaaaacaacaaagcCAGTAATGATATTGAGCCAGAACTACTG
AAACGATGCACTCACCCTATTATGCTTGAAGTGATCCACAGAATCACCAA
TAACCAATTGTGGTCTGGGCATGATCTGCCTATCTCTTGGGGTCAATCTC
TTCTCAGAACATTATGGAAGGGCAAAGGATCAAAGAAGGATCCCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051124-exon-scaffold_197-1491911889:3993..5822 | TCONS_00051124-exon-scaffold_197-1491911889:3993..5822 | Clytia hemisphaerica | exon |
| TCONS_00051124-exon-scaffold_197-1510915933:3993..5822 | TCONS_00051124-exon-scaffold_197-1510915933:3993..5822 | Clytia hemisphaerica | exon |
| TCONS_00051124-exon-scaffold_197-1575043694:3993..5822 | TCONS_00051124-exon-scaffold_197-1575043694:3993..5822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_197 | supercontig | scaffold_197:3993..5822 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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