TCONS_00051111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051111
Unique NameTCONS_00051111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051111 ID=TCONS_00051111|Name=TCONS_00051111|organism=Clytia hemisphaerica|type=transcript|length=1080bp
ATTTTAGGTCTTTTCTCGAAGAGTTTACGATGTGAACTTGTTAGTATTGG
TCCAGTTATACGAGGTTGTTGAAAAACAATCAAGAATACATTTCAATCCC
CAGGCATGGACACTTTTACCATTGACACATTCAGATGGCTACCCAGCACA
TGGTTACTTCCAAGTACCTCTTTTCCAAGGTGTTCCTACCAAGGTAATAC
TGAAGGATATTCGAAACCAGCCGTTAATACCCACTATATCCAACCTccga
aaaaagaagattttaaagATTGTCGATGGAGCTTCTGTGTTCATTCGAGT
CGGTGATCCGAGAAGaatcgaaaatgaaaattcattgAAAAGGaTGCCTC
TGGATTCATCGTTCTTACCGAAAGGTAATAAATtcaccaaccaaatcaaa
tcaaaaccgATTACATCTATATTACCGAAAGACAAAAATGACTTTCAACA
CTATGTTGCTTATTGTGGAAAATTATTTGACAATTTCATAGAAGATTTTA
TGAAAGACAGACAATCTGACAGATGAAAAAAACAGAAATCAAGGTTTGGA
TAATTGTGGTGTTATTTTTTAGAGAAATAGGTGTGGACCATCTTAGCCAA
AACAGCCTAATTACATAAAGGTCATCAAATTTATTACGCGGACTAAACAA
TCACGTATtaattataatataaaaattttttattatacttttaacgctgt
aaattattttatttttataaatatatattttactttttcatgtTTAAAGT
TTTAAGAATAACTACTTTTTAATTACTATTCTATTCTAAAATATTTGGAc
aaaatgtataattttggaCCGCAACGTTAGCTATTTACGACATTATATAT
GCAAACGgtgcaaaaaaaaacacacataaGAGACTCTGGTTAAAGtctgt
ataaacgactggaagaatctggtgttccagccttatagataccccggcta
gctacgcagaaactcgCAAGCTCtcaaaactctcaaaacaaaatcaactc
aaaatgaaaaacttttcacacacaaatccacacagatttttttttcaaga
ttttttttcagcttaaaaaaattataattg
Run BLAST on NCBI

transcript from alignment at scaffold_197:30215..34990+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051111 ID=TCONS_00051111|Name=TCONS_00051111|organism=Clytia hemisphaerica|type=transcript|length=4776bp|location=Sequence derived from alignment at scaffold_197:30215..34990+ (Clytia hemisphaerica)
ATTTTAGGTCTTTTCTCGAAGAGTTTACGATGTGAACTTGTTAGTATTGG
TCCAGTTATACGAGGTTGTTGAAAAACAATCAAGAATACATTTCAATCCC
CAGGTAATTATTGACTATCGAAAAAtctacattaaaggaagaaattttgg
cgggaagaaaatttggcggatttggttaaaatccgccaaattaagttccc
accaaatttaagttgctctatttattcccccaaatgtgtgctatttcatG
CTTTAAAACATACAGgtcttttcatttttaatggTGTTTTTTGGACGATG
CCCTTCGTCCACCAAATTAAAATCCCGCCAATTTAATCTTTCAAGttaac
cgcaaaattaaattccctgtgaaaaaactttttcggccatccgccaaatt
aaattcccgccttTAAATTCGccatttcttcctttaatgtaacTTATATG
CGTAACCttggtactctcgggtacctaatagctttGAATAAAGCGGTGAG
TGAtcggaaaaattctcaaaacttaataagcgtgggggggggtggaataa
aaatgtcctaggtggaaaattttttaaaaaggaggctaatacagcagatt
taggacaaaagagggaactttcaaaaacattttcccaaaaaatgatAAGC
AGGGGGGGCGCTTAATAAAAATttcctgggtggaaaatcttcgaaaaatt
aattagcgaggGTTTCTAGAAATATTTCTGCAATTTGGCTTGTAAATGAT
TTTCTTAGAACATAttcatgaattttaaaattgggAATGGGTAAATAGAA
TTAAGAAGCGATTGcccggtggatttcttaactacccGGTGAATATTCTT
CATTTCCCCACATTTACAAGAGGGGCAAGTTTTAAACTTTCCACAGGCAT
TTCCGGAGTGCTCAGAGGCcactttcccgatcgggaaactggTGAACTTC
CCGATTTGGAAAGTCTAGCCATTTCGGAAAGTTttccaccttcccgttcg
ggaaatatttcccgttaaggcaatagttgccttttCTATGTAGTGGTCGC
GACTGACATTgtaatttgtaattttgaagggaaatggCTGCTAAAATGTT
TGGCGATGTTTACCTCATTCTCTTCATCATTACAGGCATGGACACTTTTA
CCATTGACACATTCAGATGGCTACCCAGCACATGGTTACTTCCAAGTACC
TCTTTTCCAAGGTGTTCCTACCAAGGTAAAGTAACATTCCATTTTCTGTG
TGTTGGATGAAATGGGCTctcccagaaaaaaaattgaatatgggggatgg
aaatttacccccggacattgtgaattaCGACCTCCCTCCCTACGGACACT
CACCCCTTCCGGACAAACATCAAATGACctcccggacattcaaaattacc
cctaaacagagcaagtttacccccaaaacaaggcaaatttcgcagatttt
tcactacccccagacgaaatatccaatatatcctccaccccaatGTACAA
AGAATTTATCGAAGTGCCCATTGTTGGAATCGTTTAACCCGGCCTTAAAT
ATCAGTTTAGCGCATTACACTGGACAGgtattcaaaacaaagaaagcctC
CGGAGTCAACTTGAAAGTAAACTGGCTATGATGTAATCCGAGTCCAGCTA
GCACACGACGTcgtttcaaagtttttctaatattcacaacgttcatataa
cgttagatgaacgttgaaacaacgttgtgtgggAGGGTCCATCTAAGAGT
CTCTCGAAGAGTTACAAATAAGACACTCGTctggacaaaaatattgacta
aaagaaaagataaatagCCTCTAGTTAAGATAACTGACTTTCTACCCTGC
CCAAATCTTATTGTTGAAGTAAGTAAAAAGTcagcagttaaaatctttgc
ttgaaataataaattaaaaaagtcaGTGCACTGACGTCAAAATGGGAAAT
GCATGAGACTTTAGGCAGTCAACTTTCTGCCCATATTAATTCACAGGGTG
AGAAGTGGGCCTAAAAAGTGGACATACGCAGAggacttttttcgggacac
cctgtagtggAGACAGAAAAGTTTTCTTGGTAGATTTCAAATCAGATGGT
GGTTATATAAtcgttgaaaaatattttactttagacgaaaacaaaaagat
gtgttttcggaatgcgggtgaaggaaaaaagctctcatgcggccgaccga
gaaaattttttttgctatttttgataacttaagatcattgaaatagaact
ttaaagataacttttatgtacaaacagtatgaagtaagccctgaatacta
aTGTATCAACTACTAACGAAAGTCTGCGGCCGGGTCAGAATTTTTTTTtt
acccggccggtttccggaaaactacacttttttattttcgccttaggTTC
CGATTTCCCTTTTCTCGTGTTcatttaattatttcttttttcgaaCCACA
GGTAATACTGAAGGATATTCGAAACCAGCCGTTAATACCCACTATATCCA
ACCTccgaaaaaagaagattttaaagATTGTCGATGGAGCTTCTGTGTTC
ATTCGAGTCGGTGATCCGAGAAGaatcgaaaatgaaaattcattgAAAAG
GGTAAGAGTCACGAATAGTTTGGGGAGGGAGGTATAATGAAAATATAGGG
AACGTATCAGATACACCAAACtatatactctcgggtacctaatagccggg
gggcgCTAATTCCCACCTAGGACATTCTTAATCCAACCTCCCCCCTCCCC
TGCTCATTCCAAACCCTTcggttattaggtacccgagagtaagaacataa
ggcttcgatggccaaaatgttaagaatgtTTTAGGGCTTCGCGAACAAAT
TCTCAGGTTCCAGTCAAAGGGAACCCTTGTAAAAtagtttctgtaattcg
aatcttttttgtaattcgaacaaactAGACTTCCCGTTTGACTTCGAATT
AATGAGAATTAACTGTAGAAAgtttaaaaactattttttcagaTGCCTCT
GGATTCATCGTTCTTACCGAAAGGTAATAAATtcaccaaccaaatcaaat
caaaaccgATTACATCTATATTACCGAAAGACAAAAATGACTTTCAACAC
TATGTTGCTTATTGTGGAAAATTATTTGACAATGTAAGTTTAAATAGTTA
ATGAGAAGGActacctattcatgatatgcgccattgtaatttcttctgac
attacgtcacgggcacaacagctgattggttgtaagtgacgtaaaatctg
TCAAtgcgtcacttgcaaccaatcagctgtttggtTCGTGGAAGACAATG
tgatggtgcatatcatgtatATCTGTTTTAACCGAAAACTACGGGTTCTT
ATAATCTAATGGATTTTCGGTGCAATACCGTAGAAAGGTCATATAAatta
tctgaaaatattttctaaatctgaatgatttcaatgattttgcaGCCTTC
TGCACTGGATGACTTTAACCCCAGCGCATTTTTTTTGAGGTCTGATGGAT
TCAATTGAAATTTCTCCAGACTTACGTGAAAGGGCTTTTGAACCCAACTC
GGCTTCATACTACTTTTATCCGCTGCGTCTTTAAAATTTTagctacctta
agagaagaaattttggcgaaagtTTTGATGCAAGTTGGCGATTTTTGGCG
AAATTTCTAAgtttggcgagaatttattttggcgaataacCTATAAATTT
AAACTTCTTTTCACCAAAACTTCTTCCCTTGGGGCCGTcaacatagtacg
tacgcactaagggggatcttctcaaaagcgtatgcttgcgtacagggggg
gggggagaagtcaaaggaaaatgtacgtacgcagagaaaaatttttcata
gcccttttcgcttgtttttttgtcgacttttacgcttgttatacgcatca
aggaaaagaaaaagtttcttgataaacattgagtttcatgtatgaaataa
aggtccgaaccaaaacgatttgaattcgagattttcttcaaccgaaGGGG
GGTGAATGAATTTTATATGTATTACTTACCAGAGAGGgatatagccattt
gcgtacgcttgcgtacatgGGGGGGAGGGGtgctcgattttcgacatttt
agtgcgtacgtactatgcgGACGGCCCCCTTAAGGTATTAcaatatgcaa
aaaaaatttgtatgtattttttaattacaGTTCATAGAAGATTTTATGAA
AGACAGACAATCTGACAGATGAAAAAAACAGAAATCAAGGTTTGGATAAT
TGTGGTGTTATTTTTTAGAGAAATAGGTGTGGACCATCTTAGCCAAAACA
GCCTAATTACATAAAGGTCATCAAATTTATTACGCGGACTAAACAATCAC
GTATtaattataatataaaaattttttattatacttttaacgctgtaaat
tattttatttttataaatatatattttactttttcatgtTTAAAGTTTTA
AGAATAACTACTTTTTAATTACTATTCTATTCTAAAATATTTGGAcaaaa
tgtataattttggaCCGCAACGTTAGCTATTTACGACATTATATATGCAA
ACGgtgcaaaaaaaaacacacataaGAGACTCTGGTTAAAGtctgtataa
acgactggaagaatctggtgttccagccttatagataccccggctagcta
cgcagaaactcgCAAGCTCtcaaaactctcaaaacaaaatcaactcaaaa
tgaaaaacttttcacacacaaatccacacagatttttttttcaagatttt
ttttcagcttaaaaaaattataattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032402XLOC_032402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051111-exon-scaffold_197-1491911889:30215..30317TCONS_00051111-exon-scaffold_197-1491911889:30215..30317Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1510915933:30215..30317TCONS_00051111-exon-scaffold_197-1510915933:30215..30317Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1575043694:30215..30317TCONS_00051111-exon-scaffold_197-1575043694:30215..30317Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1491911889:31350..31439TCONS_00051111-exon-scaffold_197-1491911889:31350..31439Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1510915933:31350..31439TCONS_00051111-exon-scaffold_197-1510915933:31350..31439Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1575043694:31350..31439TCONS_00051111-exon-scaffold_197-1575043694:31350..31439Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1491911889:32666..32815TCONS_00051111-exon-scaffold_197-1491911889:32666..32815Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1510915933:32666..32815TCONS_00051111-exon-scaffold_197-1510915933:32666..32815Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1575043694:32666..32815TCONS_00051111-exon-scaffold_197-1575043694:32666..32815Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1491911889:33207..33347TCONS_00051111-exon-scaffold_197-1491911889:33207..33347Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1510915933:33207..33347TCONS_00051111-exon-scaffold_197-1510915933:33207..33347Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1575043694:33207..33347TCONS_00051111-exon-scaffold_197-1575043694:33207..33347Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1491911889:34395..34990TCONS_00051111-exon-scaffold_197-1491911889:34395..34990Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1510915933:34395..34990TCONS_00051111-exon-scaffold_197-1510915933:34395..34990Clytia hemisphaericaexon
TCONS_00051111-exon-scaffold_197-1575043694:34395..34990TCONS_00051111-exon-scaffold_197-1575043694:34395..34990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:30215..34990 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04699	1.33719	0.257216	0.48869	9.28924	9.70619	12.2755	15.907	4.82341	7.08298	5.08718	5.49014	1.58421	2.55577	0.792803	1.04349	0.874488	1.32684	1.11355	0.312005	1.45262	1.3212	1.26485	1.4265	10.5204	18.2342	0.82424	1.49424	0.827457	0.667008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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