TCONS_00051112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051112
Unique NameTCONS_00051112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051112 ID=TCONS_00051112|Name=TCONS_00051112|organism=Clytia hemisphaerica|type=transcript|length=176bp
CAATGCATTGACATACATGTTTTCTTTGATTATGTCATGTTgtctatttt
tcataatttagaTTCAAAAGTCAGCAGCAAAAGCTCATATTGATTTTGCG
AAAGAAGTTTTGCAAATTGCTGGAGAAAAATTCAGCCAAGAAACaattaa
caaacaaaaaaacaatgaagAAGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_197:56344..56611+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051112 ID=TCONS_00051112|Name=TCONS_00051112|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at scaffold_197:56344..56611+ (Clytia hemisphaerica)
CAATGCATTGACATACATGTTTTCTTTGATTATGTCATGTTgtctatttt
tcataatttagaTTCAAAAGTCAGCAGCAAAAGCTCATATTGATTTTGCG
AAAGAAGTTTTGCAAATTGTGagttattgtttttttaagatcaatttatc
aatttttttttgaaagttaagTTTTGTTTATTACAATGAAAATCTTTTCA
TACGTTTCAGGCTGGAGAAAAATTCAGCCAAGAAACaattaacaaacaaa
aaaacaatgaagAAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032403XLOC_032403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051112-exon-scaffold_197-1491911889:56344..56461TCONS_00051112-exon-scaffold_197-1491911889:56344..56461Clytia hemisphaericaexon
TCONS_00051112-exon-scaffold_197-1510915933:56344..56461TCONS_00051112-exon-scaffold_197-1510915933:56344..56461Clytia hemisphaericaexon
TCONS_00051112-exon-scaffold_197-1575043694:56344..56461TCONS_00051112-exon-scaffold_197-1575043694:56344..56461Clytia hemisphaericaexon
TCONS_00051112-exon-scaffold_197-1491911889:56554..56611TCONS_00051112-exon-scaffold_197-1491911889:56554..56611Clytia hemisphaericaexon
TCONS_00051112-exon-scaffold_197-1510915933:56554..56611TCONS_00051112-exon-scaffold_197-1510915933:56554..56611Clytia hemisphaericaexon
TCONS_00051112-exon-scaffold_197-1575043694:56554..56611TCONS_00051112-exon-scaffold_197-1575043694:56554..56611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:56344..56611 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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