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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051221 ID=TCONS_00051221|Name=TCONS_00051221|organism=Clytia hemisphaerica|type=transcript|length=1635bp
TTTAAATTGATAGTGAAATTCATTCGTAAACAGTACTATCCCAATAGAGC
CTAATGGGATCTTCCAGAAAATATTCgtacttgctctgtttgggttAATT
TAGATTGTTTAGGGGGTCAACAGATGCTTGATCGAGGGGTTAGAAGTCAC
AAAAAATGTTCAGAGGGTGAATTTCTGAAAGAAGTTATATCCTCcatcca
aaattcaaacttttttctgaaGAGCCCAATCTAGAGAATTCCAAGATATT
CTTTCAGACAACGAGGAAGATTTCCAGCCAAATATTCGTCATCAAAATGA
TTCAAACACGCTAATCGAGCCCATTGTTTCAAATTTGTCTCGCTGTTTCT
GAATAATcctgtttttaagattttaaggaAATAATCTGGTCTACAACGAG
TCTCGTCAACAATAACaactgaaaattcttccaaacTCCGATTGAAGCAA
AACATATGTAATAAAAAACCAGTTTCAAAATTGTAAACTAATTGACCAGA
GCTGATATCAAATAATCGAACACCattcgaagaaattttcaaatattttt
cagtctCAATGCAAAGATAACATTTCTCAAAACATCGGAGTAAATCGAAA
CTAGCAGAATGTTTCATTTCAGGGGGTAATTGAAAACTGTTCAAAATGAC
CATTCTGGTGTGGGTAAAATTGCAAATACTAACTTCCAAGTCCGTCCAAA
CGATTACAAATATTGATCCATTTATGTgttcaataaaacaaaaatcttGA
TCGAGACCACCACATTTTGCTTGCTTCTGAATTCGgtattcaaatatttt
atttccagATAAATCAAATCCACTTAAGATACCTCTATCATTCCTATTGC
TTTTCTCGATAAGGTATAATCTCTCAGATCGTAAATCATACAGGGGGTAC
ACCGAAGCGACCACGAGTCGCCCATACAAAAGATAACCAATGTTATCAGG
TATTGTTAAACGTTTAAAGTGTAACAAGttcttttcatcaaatttgaata
agtcAATAACATAATCTCTACTACCCCTTGCTTGTACTAATGTTTCTAAG
TAACGTTCAGTATTGATTACGCGAATATGGAATTCAATAATGTGACCTCG
AGGATACGAGCGTTCAATACAACCAGACTGTTGTTCTGCGTCTATAGGTA
TGGTCACTGATCTCCCTAAATACTTCTCAAGACATCCACTTTCGATATGG
ACAAATTGTTTCTCTTTGTCAAATTCCATAGATATACAAAACCAGCGAGT
CGTAAACGGATCAAGCATACTTCTCTTGTAATGCTTTTTATTCATGATCT
CCAGGTTAACCAGATTATATTTCAATGCTTGAATATCATTGTCAAAATGG
TACACTAATATTTGATAGGGTGAGCCACCGGAGCCACCTAAATCAATCGT
AAAATATTTCCCACTGCGATCAAAACCGTTTGTAGAATAACTTCTTATTC
TAATACAGTTTTTTTCGTTTTGAGACCAAGTTTCTTCTATTTCACGGCAG
ATTTCTGTCTCCCTTGGGAGGAAGTTTTGTCGGGATTTGTTCCTTGCCAT
GATAATGATGATGTCTTCAATCATACGTCACTGTACAAGCACAAATCTAG
TTCTTCTTactttgattattttgatatttaacCAT Run BLAST on NCBI transcript from alignment at scaffold_20:25958..27651- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051221 ID=TCONS_00051221|Name=TCONS_00051221|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at scaffold_20:25958..27651- (Clytia hemisphaerica)
TTTAAATTGATAGTGAAATTCATTCGTAAACAGTACTATCCCAATAGAGC
CTAATGGGATCTTCCAGAAAATATTCGTACTTGCTCTGTTTGGGTTAATT
TAGATTGTTTAGGGGGTCAACAGATGCTTGATCGAGGGGTTAGAAGTCAC
AAAAAATGTTCAGAGGGTGAATTTCTGAAAGAAGTTATATCCTCCATCCA
AAATTCAAACTTTTTTCTGAAGAGCCCAATCTAGAGAATTCCAAGATATT
CTTTCAGACAACGAGGAAGATTTCCAGCCAAATATTCGTCATCAAAATGA
TTCAAACACGCTAATCGAGCCCATTGTTTCAAATTTGTCTCGCTGTTTCT
GAATAATCCTGTTTTTAAGATTTTAAGGAAATAATCTGGTCTACAACGAG
TCTCGTCAACAATAACAACTGAAAATTCTTCCAAACTCCGATTGAAGCAA
AACATATGTAATAAAAAACCAGTTTCAAAATTGTAAACTAATTGACCAGA
GCTGATATCAAATAATCGAACACCATTCGAAGAAATTTTCAAATATTTTT
CAGTCTCAATGCAAAGATAACATTTCTCAAAACATCGGAGTAAATCGAAA
CTAGCAGAATGTTTCATTTCAGGGGGTAATTGAAAACTGTTCAAAATGAC
CATTCTGGTGTGGGTAAAATTGCAAATACTAACTTCCAAGTCCGTCCAAA
CGATTACAAATATTGATCCATTTATGTGTTCAATAAAACAAAAATCTTGA
TCGAGACCACCACATTTTGCTTGCTTCTGAATTCGGTATTCAAATATTTT
ATTTCCAGATAAATCAAATCCACTTAAGATACCTCTATCATTCCTATTGC
TTTTCTCGATAAGGTATAATCTCTCAGATCGTAAATCATACAGGGGGTAC
ACCGAAGCGACCACGAGTCGCCCATACAAAAGATAACCAATGTTATCAGG
TATTGTTAAACGTTTAAAGTGTAACAAGTTCTTTTCATCAAATTTGAATA
AGTCAATAACATAATCTCTACTACCCCTTGCTTGTACTAATGTTTCNCAA
ATTTGAATAAGTCGATAACATAATCTCTACTACCCCTTGCTTGTACTAAT
GTTTCTAAGTAACGTTCAGTATTGATTACGCGAATATGGAATTCAATAAT
GTGACCTCGAGGATACGAGCGTTCAATACAACCAGACTGTTGTTCTGCGT
CTATAGGTATGGTCACTGATCTCCCTAAATACTTCTCAAGACATCCACTT
TCGATATGGACAAATTGTTTCTCTTTGTCAAATTCCATAGATATACAAAA
CCAGCGAGTCGTAAACGGATCAAGCATACTTCTCTTGTAATGCTTTTTAT
TCATGATCTCCAGGTTAACCAGATTATATTTCAATGCTTGAATATCATTG
TCAAAATGGTACACTAATATTTGATAGGGTGAGCCACCGGAGCCACCTAA
ATCAATCGTAAAATATTTCCCACTGCGATCAAAACCGTTTGTAGAATAAC
TTCTTATTCTAATACAGTTTTTTTCGTTTTGAGACCAAGTTTCTTCTATT
TCACGGCAGATTTCTGTCTCCCTTGGGAGGAAGTTTTGTCGGGATTTGTT
CCTTGCCATGATAATGATGATGTCTTCAATCATACGTCACTGTACAAGCA
CAAATCTAGTTCTTCTTACTTTGATTATTTTGATATTTAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051221-exon-scaffold_20-1575043694:26642..27651 | TCONS_00051221-exon-scaffold_20-1575043694:26642..27651 | Clytia hemisphaerica | exon |
| TCONS_00051221-exon-scaffold_20-1575043694:25958..26582 | TCONS_00051221-exon-scaffold_20-1575043694:25958..26582 | Clytia hemisphaerica | exon |
| TCONS_00051221-exon-scaffold_20-1510915933:26642..27651 | TCONS_00051221-exon-scaffold_20-1510915933:26642..27651 | Clytia hemisphaerica | exon |
| TCONS_00051221-exon-scaffold_20-1510915933:25958..26582 | TCONS_00051221-exon-scaffold_20-1510915933:25958..26582 | Clytia hemisphaerica | exon |
| TCONS_00051221-exon-scaffold_20-1491911889:26642..27651 | TCONS_00051221-exon-scaffold_20-1491911889:26642..27651 | Clytia hemisphaerica | exon |
| TCONS_00051221-exon-scaffold_20-1491911889:25958..26582 | TCONS_00051221-exon-scaffold_20-1491911889:25958..26582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:25958..27651 - |
Blast
The following BLAST results are available for this feature:
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