TCONS_00051224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051224
Unique NameTCONS_00051224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051224 ID=TCONS_00051224|Name=TCONS_00051224|organism=Clytia hemisphaerica|type=transcript|length=1686bp
AGACCGTATTTTAGTTTTAACGCCTCGCTTGGTGTAGAGAGCCTGGTCCG
ATTTGAAAGTATAAATCTTGCAAAATAACACTTCTCGAAATCATTCCAGG
CCGTCCAGACGGACTTCACTGACTGtgatttttgaaagtcaaataTTGAA
CTTTTACATTTCTTGGAGATttaactttgtttattttggttaTAAAGCAC
AAGCAAAGATGCCAAACATTAAGATTTTCAGTGGTAGCTCTCACATGGAC
TTGGCCAGGCTGGTTGCAGAGAGGTTGAACATGGAAATGGGTCGTGTCAA
ACTGAGGAAATTCTCCAACAAGGAAACTAGCGTGGAAGTTGGTGAGTCAG
TTCGAGGTGAGGATGTTTATATCATTCAAAGTGGATGTGGAGATATCAAC
GATAACTTGATGGAATTGCTCATCATGATCAATGCATGCAAAATTGCATC
TGCTGCTAGAGTTACAGCTGTCATTCCTTGCTTCCCTTATGCACGTCAAG
ATAAGAAAGACAAGAGCAGAGCACCAATTTCGGCCAAACTTGTTGCAAAC
ATGCTCTCTGTTGCTGGAGCTGACCATATCATCACTATGGACCTACATGC
TTCTCAAATTCAGGGATTCTTTGACATTCCTGTTGACAATTTGTTTGCTG
AGCCAGCGGTACTGAAGTACATAAGAGAAAATCTTCCTGATTGGGAACAG
TGTGTTATTGTCTCACCAGATGCTGGGGGTGCCAAACGTGTCACGTCTAT
TGCTGATCAACTGAATGTGGAATTTGCACTTATTCACAAAGAgAGGAAAA
AAGCCAATGAAGTGGATAGCATGGTTCTCGTTGGAAACGTGACTGATAAA
GTAGCGGTCCTAGTTGATGATATGGCAGATACCTGTGGAACTATGAAGTT
GGCTGCAAAAAAGTTGAACGAAGCTGGTGCAAAAGAAGTATACTGTATAT
TCACGCATGGTATCTTATCGGGTCCTGCTGTATCTCGTTTGATGGAATCT
GAAATCAAATCCGTCATCGTTACCAATACGATACCCCAAGAAGACAAGAT
GGCACAATGCCCAAAAATCAAGcTAATTGATATTTCACCCATCCTTGCTG
AGGCAATCCGAAGGACGCATAATGGCGAGTCAGTTTCATATTTGTTCAGT
CATGTTCCTCTATGAGTAACAAAAGAGTCATATGAAACTATGTATTGCAT
GCACCCTTGACTTTCAAGTATGGACATCCACTCTAGTTTTCGTACAGCTA
GAAGCTCTCACTCGAGCGTAATATTAGAAGAGCTTGACAAAGATGCTCTG
TCATAAAATGACTGATTGACATTAAATTGACACATTACTAACACTGACAT
TAACTGAGTTCAACTTTGTGTAATATAAGGTGGAGCCTGTCTTCGCCGCA
TAATAATTTATAAATagcttttgttttttaaaagttgTTCCCCTCGCATT
GTACAAAATAGTGttgttaatgatttttttttcttaatgaTAGTTCAGCA
ACGTGCATCGTACTAGAAGTATGTTCATGCCGTTCTAGGTTCTTAGAGAA
TTTGTAGTTTTTTTCAGATTAAAATTTTCACCCGAATTTGTGTTCAATCG
AGTGttgagagaaaaagagagacaaatttattatttaaattcgttttata
aTGAGATTTTATTAacgttttaaaattgaaaataca
Run BLAST on NCBI

transcript from alignment at scaffold_20:42675..47726-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051224 ID=TCONS_00051224|Name=TCONS_00051224|organism=Clytia hemisphaerica|type=transcript|length=5052bp|location=Sequence derived from alignment at scaffold_20:42675..47726- (Clytia hemisphaerica)
AGACCGTATTTTAGTTTTAACGCCTCGCTTGGTGTAGAGAGCCTGGTCCG
ATTTGAAAGTATAAATCTTGCAAAATAACACTTCTCGAAATCATTCCAGG
CCGTCCAGACGGACTTCACTGACTGTGATTTTTGAAAGTCAAATATTGAA
CTTTTACATTTCTTGGAGATTTAACTTTGTTTATTTTGGTTATAAAGCAC
AAGCAAAGATGCCAAACATTAAGATTTTCAGTGGTAGCTCTCACATGGAC
TTGGCCAGGCTGGTTGCAGAGAGGTTGAACATGGAAATGGGTCGTGTCAA
ACTGAGGAAATTCTCCAACAAGGAAACTAGGTATAAATGTGATTTCTGCA
GGTACTTTCGGTAGTTTTTGTTTAGGATACTTTGGATTTTGTCAGGGCAA
AGGGGTAGATTTTACTTAGTTTTCTAGCTTACTTTTTTTTTATCTAGCGT
GGAAGTTGGTGAGTCAGTTCGAGGTGAGGATGTTTATATCATTCAAAGTG
GATGTGGAGATATCAACGATAACTTGATGGAATTGCTCATCATGATCAAT
GCATGCAAAATTGCATCTGCTGCTAGAGTTACAGCTGTCATTCCTTGCTT
CCCTTATGCACGTCAAGATAAGAAAGACAAGGTATACTTTTAGAGATTAT
GAGTTGTGATTTCTGCCTTGTTTGAACTGCCGATTTAATAATAAAATGCA
GTGGGGAAGTCCTGTTGTGATACCGTGAGATCAGGTAACTTGCATCAGTG
GAGGCAAACATGCATAGCCCTCAAATGAATGACCTGTCTGGTCATTAAAT
ACAACTACGCAGCTCCGCTCGCAGCTCTACTCTACCATTTTCGTTTTGAT
TTAAATTTGTATTTTAATGACCAGCCAAGTCTTTCATTTGAGGGCTATGC
ATGTTAGCCTCCACTGATGCAATTTACCCGATCTCACGGTACTAAAACAC
TGAATACCTTGTTAAGGGAACTTATTTTGGCTGTAACTAATTTTGGCAAA
TTCGATGAATTTAGGTGGCCATCGCAAAAATAGTTCTGTTCGTGTCACAA
CAGGTGTTAAAAATGTGGGCGGACGGGCAGTCGAAAAAATTCCCGTTTTT
TTTTAATCGCTTCTGTAAGTCAAGAAAAAAGCTATACGTCAAAAGAATTT
GCTTTTTCCAGATTTTTTCCCGCATCTCCGCACCAGAAAATCAGGGGAAA
CTATGATGCGGGCGGGTGACGTGAATAGAACAATTTTTCAATGGTCGCCC
TAGACAAAATTCGCCAAAATTAGTTCCTGTCAAAATTAAATATTTGGTAA
TTTACCTAAATAACTTCTTGAGTTCACAAAGAAAGCTTCAAATAAGACAA
AATAGAACAAATTTACGCTGTCATCCGCCAAAATTAGTTCCCCCACCAAA
ATTTAAAAAATTCATCAATCGCCAGCAATCGCCAAAAAATTCTCACCAAA
ATTAAAAATTTTAAGGATTTTTGCCGCTCGTCAAAATTAGTTCCCGCCAA
AATAGTTCCCTTAAGGTATATATTGCAAAAACTTTGGTGAACACAATGAT
ATCATCAAGTACATAAATTTTTTCTCTGAATAAATATGAATTTTCTTCAA
CTTTTGAGCAAAATCTTCAAGTTTTTTTAAGATCAGGTTTTCAACGATTT
CAGATATTAACTTTTGAAAAATTCATTGACTCCTACCTAGGGGTTCTATT
TTTTGCGGGAACTAATTTTCTCTGTGCGAGGGTACTAAATTGGCACATTT
TGCAGAACTAATTTTCGTGGTTGACACACTCTTTTTGCTGAAATTCTTTC
ATGTTCCTAGAAGTTTTGGAGGATTTTCAGTAAAATTGCATTTGGCAACA
CGAATTTTTGTGGTAGACGTCAAATTTTATTTGGGTCAATTTTTGCTACA
AATCTGAATTTCTATCTATCTATCTATCTATCTATTATGGTTGAGTTACA
AGAGGCTCTGGGAGCCCATTCTCGCAACTATAGATGCTTTGAGTAAGCAT
CCTGTCAGCAACTTGAACTGACTACCCAATTCCCCTCACATGGCATGGGT
TAACCCAGACAAAGGTTTGTTCACTTGCCAAGTGAACTGGTGTGAGTGGG
AATCAAACCTTGGTCGCCCATGCAGTAAGTTACAATTTCATTGTTTAGAG
AAAAACAGAAAAATCGAGAATGCAAAAACTGTGATATAAGTATTTTCAAG
TTGCAAATCTTTTCTTTTCTGTTACAGAGCAGAGCACCAATTTCGGCCAA
ACTTGTTGCAAACATGCTCTCTGTTGCTGGAGCTGACCATATCATCACTA
TGGACCTACATGCTTCTCAAATTCAGGTGTGGTATTTAATAAAATTTATT
GTTGTGTTTATCTATGTAATCATTGTCAAGGCATCTCAGTCCTTTTTCCA
ATAATGAAAAGCCTAATCCGATAACATTTTTATTGAGATATTAATAAACT
TCAGTGCAACTTGCAAAGAGCAAAATAAAAGTATTCTTCTACTCATTGCT
TTTATTTGAATCTTTACGTTTACATTTTCAGGGATTCTTTGACATTCCTG
TTGACAATTTGTTTGCTGAGCCAGCGGTACTGAAGTACATAAGAGAAAAT
CTTCCTGATTGGGAACAGTGTGTTATTGTCTCACCAGATGCTGGGGGTGC
CAAACGTGTCACGTCTATTGCTGATCAACTGAATGTGGAATTTGCACTTA
TTCACAAAGAGGTAAAATATATTCAAAGAATGTCATCATCCACCTGTATC
CAAAGTGCTTGGCCAATTTGTAGAATGAAAGGGCAGCATCTGCTAGAGGG
AAATTTTTTGTTTTTATCATCATTTTCATAATTAACAAAGGGCAGTGTCC
AACGACCATATACTAAAATTGTCATAAAAATGGTCTTCGTGCTGCTTCGT
GCTTCAATTAATTTTTTTGTAAACCTAAAAACTTTAGACTCTTATCAGAG
GAGTGGTTAAAAATTCAAATTACAATGCCTTGGAACTCTATCTTTTCTAT
TTCTGTACAATGTTTCTACTTTATTCACTTCACTCTTTTCTTTATAGGTG
GTTTTTGGCTCTTAAAATTCTCTCTTTGTCATTCTAAAATACTATAACTT
TTCGAAATAGTTGAATGAAAAGAAAGGGGGAAATATGGAATTTGTTTCGT
TTGTAAAAGGCTCTTATGGTAGGTAAAACCTTACACAGAAAGTTAGATAT
ATGATAAGCTAATGTGTTAAAGTATTATAAGATTCCAAAATACGTGTAAT
ACTTAAGTGCTTAGCCTATCATATATGTAACTTGACTTTCTATTTTTTGT
TGTATTGAAAATGTGATTTTCTTTTCTCTATAAAGAGGAAAAAAGCCAAT
GAAGTGGATAGCATGGTTCTCGTTGGAAACGTGACTGATAAAGTAGCGGT
CCTAGTTGATGATATGGCAGATACCTGTGGAACTATGAAGTTGGCTGCAA
AAAAGTATTTCATTTATACTATGTTTGATTATATAGTAACCTTGCTCAGC
TCGAATTGCCTATCTTTTGTGGTTATTCTGATTGCCTTTTGAAACAGTTT
GAAATAAAATAAAAATTGAGGTACAATTTCATAAGTATAATCCAGTTTTG
GACTTATCAAAATACACTGGAATAAAAAGATGCACTTTTTGGTTTTTGAT
AGAGTTAAGATTTCGATGTATTGGCTTTATCAGCTGAAAATTTTTTAAAT
CCGGTTAAAAGTCGTATGTCATTTCACAATTTTCGTCTAACGTTCGTTTA
AGATTTCAGGTTTTAGTGTTGATAACCTTGCACTATTTCACAACTTTCAG
GTTGAACGAAGCTGGTGCAAAAGAAGTATACTGTATATTCACGCATGGTA
TCTTATCGGGTCCTGCTGTATCTCGTTTGATGGAATCTGAAATCAAATCC
GTCATCGTTACCAATACGATACCCCAAGAAGACAAGATGGCACAATGCCC
AAAAATCAAGGTATAGTATTGACTGATTTAATAACCCGAAGGGATAGATC
AGTGGTAGGATTTTCTACTCGTCAAGTTATCGTCACAAAATTTTTAAAAG
TTTACTGGGGAAGTAGCATACCTAGCTCTTAGAGCCTGATTAATATCTCT
ATCAGATGGTCTCTTTTTGTCAAGACGAATGAGTTCCATAAAAGCACTAG
TATGTTATCGAATCGGGATTAGATTTGTTTTCGATAAACAAATAAAACAC
TATTTTTATGTACTCTAATTTTAGCCTTTACTAAGCGTTTCTGACTAAAA
TCAAAGTATCTGCTTCATACATTGTTCCTTGGCTACAAATGAGAATCATC
AGCTGTCCAAATTTGTAATCCAGATAAAAGATAATCTACTGACATCATTG
TGGTCAAAGTTAACAAAAAGGATAATTGAATGAAACCGAGCAACTGACGT
ATTGAGTTAATAACTTTCAACTTGTTTTGTTCTTTTAGCTAATTGATATT
TCACCCATCCTTGCTGAGGCAATCCGAAGGACGCATAATGGCGAGTCAGT
TTCATATTTGTTCAGTCATGTTCCTCTATGAGTAACAAAAGAGTCATATG
AAACTATGTATTGCATGCACCCTTGACTTTCAAGTATGGACATCCACTCT
AGTTTTCGTACAGCTAGAAGCTCTCACTCGAGCGTAATATTAGAAGAGCT
TGACAAAGATGCTCTGTCATAAAATGACTGATTGACATTAAATTGACACA
TTACTAACACTGACATTAACTGAGTTCAACTTTGTGTAATATAAGGTGGA
GCCTGTCTTCGCCGCATAATAATTTATAAATAGCTTTTGTTTTTTAAAAG
TTGTTCCCCTCGCATTGTACAAAATAGTGTTGTTAATGATTTTTTTTTCT
TAATGATAGTTCAGCAACGTGCATCGTACTAGAAGTATGTTCATGCCGTT
CTAGGTTCTTAGAGAATTTGTAGTTTTTTTCAGATTAAAATTTTCACCCG
AATTTGTGTTCAATCGAGTGTTGAGAGAAAAAGAGAGACAAATTTATTAT
TTAAATTCGTTTTATAATGAGATTTTATTAACGTTTTAAAATTGAAAATA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032470XLOC_032470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051224-exon-scaffold_20-1575043694:47397..47726TCONS_00051224-exon-scaffold_20-1575043694:47397..47726Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1575043694:47096..47279TCONS_00051224-exon-scaffold_20-1575043694:47096..47279Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1575043694:45401..45499TCONS_00051224-exon-scaffold_20-1575043694:45401..45499Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1575043694:45016..45195TCONS_00051224-exon-scaffold_20-1575043694:45016..45195Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1575043694:44273..44391TCONS_00051224-exon-scaffold_20-1575043694:44273..44391Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1575043694:43767..43926TCONS_00051224-exon-scaffold_20-1575043694:43767..43926Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1575043694:42675..43288TCONS_00051224-exon-scaffold_20-1575043694:42675..43288Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:47397..47726TCONS_00051224-exon-scaffold_20-1510915933:47397..47726Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:47096..47279TCONS_00051224-exon-scaffold_20-1510915933:47096..47279Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:45401..45499TCONS_00051224-exon-scaffold_20-1510915933:45401..45499Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:45016..45195TCONS_00051224-exon-scaffold_20-1510915933:45016..45195Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:44273..44391TCONS_00051224-exon-scaffold_20-1510915933:44273..44391Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:43767..43926TCONS_00051224-exon-scaffold_20-1510915933:43767..43926Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1510915933:42675..43288TCONS_00051224-exon-scaffold_20-1510915933:42675..43288Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:47397..47726TCONS_00051224-exon-scaffold_20-1491911889:47397..47726Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:47096..47279TCONS_00051224-exon-scaffold_20-1491911889:47096..47279Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:45401..45499TCONS_00051224-exon-scaffold_20-1491911889:45401..45499Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:45016..45195TCONS_00051224-exon-scaffold_20-1491911889:45016..45195Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:44273..44391TCONS_00051224-exon-scaffold_20-1491911889:44273..44391Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:43767..43926TCONS_00051224-exon-scaffold_20-1491911889:43767..43926Clytia hemisphaericaexon
TCONS_00051224-exon-scaffold_20-1491911889:42675..43288TCONS_00051224-exon-scaffold_20-1491911889:42675..43288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:42675..47726 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.1663	38.2783	13.0778	12.0998	382.173	322.39	263.165	270.469	277.112	237.115	245.743	326.458	151.502	181.424	143.03	193.598	140.597	123.227	77.001	72.9449	130.268	120.853	160.643	155.681	96.6396	119.233	344.965	287.139	316.254	277.906
Blast
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BLAST of TCONS_00051224 vs. Swiss-Prot (Human)
Match: PRPS2 (Ribose-phosphate pyrophosphokinase 2 OS=Homo sapiens GN=PRPS2 PE=1 SV=2)

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 257/318 (80.82%), Postives = 291/318 (91.51%), Query Frame = 2 
Query:  209 MPNIKIFSGSSHMDLARLVAERLNMEMGRVKLRKFSNKETSVEVGESVRGEDVYIIQSGCGDINDNLMELLIMINACKIASAARVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKYIRENLPDWEQCVIVSPDAGGAKRVTSIADQLNVEFALIHKERKKANEVDSMVLVGNVTDKVAVLVDDMADTCGTMKLAAKKLNEAGAKEVYCIFTHGILSGPAVSRLMESEIKSVIVTNTIPQEDKMAQCPKIKLIDISPILAEAIRRTHNGESVSYLFSHVPL 1162
            MPNI +FSGSSH DL++ VA+RL +E+G+V  +KFSN+ETSVE+GESVRGEDVYIIQSGCG+INDNLMELLIMINACKIAS++RVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNL+AEPAVL++IREN+ +W+ C+IVSPDAGGAKRVTSIAD+LNVEFALIHKERKKANEVD MVLVG+V D+VA+LVDDMADTCGT+  AA KL  AGA +VY I THGI SGPA+SR+  +  ++V+VTNTIPQEDKM  C KI++IDIS ILAEAIRRTHNGESVSYLFSHVPL
Sbjct:    1 MPNIVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATKVYAILTHGIFSGPAISRINNAAFEAVVVTNTIPQEDKMKHCTKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
The following BLAST results are available for this feature:
BLAST of TCONS_00051224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRPS20.000e+080.82Ribose-phosphate pyrophosphokinase 2 OS=Homo sapie... [more]
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