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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051225 ID=TCONS_00051225|Name=TCONS_00051225|organism=Clytia hemisphaerica|type=transcript|length=4513bpRun BLAST on NCBI protein sequence of TCONS_00051225-protein >TCONS_00051225-protein ID=TCONS_00051225-protein|Name=TCONS_00051225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1015bp LPEAHTWNRSRAQKSMQRRLSPVVIDNTNVEAWHMKPYVADAIKFGYEVDRun BLAST on NCBI transcript from alignment at scaffold_20:50422..63487- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051225 ID=TCONS_00051225|Name=TCONS_00051225|organism=Clytia hemisphaerica|type=transcript|length=13066bp|location=Sequence derived from alignment at scaffold_20:50422..63487- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_20:50422..63487- >TCONS_00051225 ID=TCONS_00051225|Name=TCONS_00051225|organism=Clytia hemisphaerica|type=CDS|length=51816bp|location=Sequence derived from alignment at scaffold_20:50422..63487- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051225 vs. Swiss-Prot (Human)
Match: N4BP2 (NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 7.272e-26 Identity = 105/419 (25.06%), Postives = 183/419 (43.68%), Query Frame = 3
Query: 1848 DALKVAIDKSLAMDMKNKFGTADDFTDGDLQYDDLILELNEDAAQQIYQILTKNLKAKKRKLESIDKDEEFAKRLQEEEDKQQKPATATASPAKQQPKKMRRVDIDTRYAKGQTAQLFTPKSAWNKQDQSSLTPIEGIGGGQLTLEEVNG-----------------REELYRMFPGVNEEALDQLLEANNYNVDAAANMVTSSTGAVRNRDLQADINDPAWKKVTSPPKKTRPAQDTPDSPAAQIIPVNNNQQGGYFQNIADSENISYQDLRAEAELYAGMRREALQKAAEGYQAKNAGAAQYYADKAKEHERKMKEAHHRAAELMLQRRNKKYMRDQKVIDLHGLHVGEAINALKNFLENAQMISRHR----EVEVITGRGNHSIGGVSKIRNAVINYLRRGNFRYRMMNAGGSVVI 3041
D L++A+ LA + FG G L +D ++ ++ + A+ I++ +++ ++R+ E K +Q D T +P ++ ++ + + T A +++ WN Q + + I ++ L+E + ++L+++FP +N+ L + + +NY+++ + + + A + VTS + + + P + Q D E Y D RAEA L+ R E KA E Y+ A +YA + HE+KMKEA+H AA + ++ N + Q V+DLHGLHV EA+ L LE + + VITGRGNHS GGV++I+ AVI YL +FR+ + G V+
Sbjct: 1374 DCLELALPPELAFQLNELFGPVG-IDSGSLTVEDCVVHIDLNLAKVIHEKWKESVMERQRQEEV-----SCGKFMQ---DPSLVGHTGLDNPEQKSSQRTGKKLLKTLTA----SEMLPLLDHWNTQTKK--VSLREIMSEEIALQEKHNLKRETLMFEKDCATKLKEKQLFKIFPAINQNFLVDIFKDHNYSLEHTVQFLNCVLEGDPVKTVVAQEFVHQNENVTSHTGQKSKEKKPKKLKETEETPSELSFQ--------DFEYPDYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIFEKVNASLL-PQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVM 1768 HSP 2 Score: 101.679 bits (252), Expect = 2.595e-21 Identity = 44/90 (48.89%), Postives = 67/90 (74.44%), Query Frame = 3
Query: 3 LPEAHTWNRSRAQKSMQRRLSPVVIDNTNVEAWHMKPYVADAIKFGYEVDIHEMDTAWCFNCSELARKNKHNVNKQTIERLLEKYEKNIT 272
L EAH WN++RA+++ ++++SP++IDNTN++AW MKPYVA + K Y+V E DT W F ELAR+N H V+K+ I R+LE Y++ ++
Sbjct: 489 LGEAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRNIHGVSKEKITRMLEHYQRFVS 578 The following BLAST results are available for this feature:
BLAST of TCONS_00051225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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