TCONS_00051228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051228
Unique NameTCONS_00051228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length926

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051228 ID=TCONS_00051228|Name=TCONS_00051228|organism=Clytia hemisphaerica|type=transcript|length=926bp
aaaaaaaataaaacggGGAAGAAAAATAGCAATGGATAGTGACAGTatca
agaagaaaaatgaacttaaaaagaagTATTATGAATTATTTCATGGGAAA
GTTGATAAGGAGATAATTGATGTTGTACTTGCAACCTGTGAATATAATGa
gGAGAAAACCTACCACAGTCTCATCGAGATGGCTGGAGATTCATTGGACA
TTCTACCACCATCTAAACCACCGGAACCGGTCATCCAACAACCCAACATT
CACCTTACTGGTCATCTAGAGACTGACGGTGCACGTCCCATTAATAAAGC
ACCTTCTAATCTTTTCGAACAACTATCTGGTCCTGCACCACCGACCAGTT
CCCAAAACCTCTTTCAGTCACCGAGTTTCCCAGACACCAGTAATCCGTTC
CGATCATCTCCAGCTGCCACCGGATCACTTTTCAATAACCCGATTCCAAC
ACTTAACCAAGTGCAATATCCAATCGGAAACCCTATTCCGACACTTCCAC
AGACCAGAAATCAAATACCTACCCTACCTTTCGGAGGTGGGAGCCCGCAA
CAGCCTAGGATTAGTACCTCTCCCTACTCAACACCACCCGGCCTGTTTCC
CAATCCACGAGCACTCCTTCCTACACCACCACCATCTACTAGCGATCCAA
TTATGATGATTTCACCATCATGTCAACCTTTTCAACTCATTAGCCATCCA
GCAAACGAAACGATGAAACCAACTCCTGCTAATCGACCAGTACCTGCACC
AAGGAAGAACATCCCTCAAAGCAAGACAGCAAAGTATCACGAGGTTGGTA
CTCTATGGTTGGTTTTAATGAGAGGATTACCCGGTTCTGGTAAATCACAT
CGATCAAGGGAGATAGCTGGAGGACGTGGTGTAGTTTTATCTACGGATGA
CTACTTCATGAATAATGGGAGGTAAA
Run BLAST on NCBI

protein sequence of TCONS_00051228-protein

>TCONS_00051228-protein ID=TCONS_00051228-protein|Name=TCONS_00051228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
KKIKRGRKIAMDSDSIKKKNELKKKYYELFHGKVDKEIIDVVLATCEYNE
EKTYHSLIEMAGDSLDILPPSKPPEPVIQQPNIHLTGHLETDGARPINKA
PSNLFEQLSGPAPPTSSQNLFQSPSFPDTSNPFRSSPAATGSLFNNPIPT
LNQVQYPIGNPIPTLPQTRNQIPTLPFGGGSPQQPRISTSPYSTPPGLFP
NPRALLPTPPPSTSDPIMMISPSCQPFQLISHPANETMKPTPANRPVPAP
RKNIPQSKTAKYHEVGTLWLVLMRGLPGSGKSHRSREIAGGRGVVLSTDD
YFMNNGR
Run BLAST on NCBI

transcript from alignment at scaffold_20:63880..66234-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051228 ID=TCONS_00051228|Name=TCONS_00051228|organism=Clytia hemisphaerica|type=transcript|length=2355bp|location=Sequence derived from alignment at scaffold_20:63880..66234- (Clytia hemisphaerica)
AAAAAAAATAAAACGGGGAAGAAAAATAGCAATGGATAGTGACAGTATCA
AGAAGAAAAATGAACTTAAAAAGAAGTATTATGAATTATTTCATGGGAAA
GTTGATAAGGAGATAATTGATGTTGTACTTGCAACCTGTGAATATAATGG
TAAGCGAAGGTTAAAGGAACCTTGGTTACATTATACCTGAATCTAGTTGA
TTATACGTATTGCTAGACCTACTATTTTTATAGTGTTACTGGATTTCATT
TCTCTCCCGAAACGAGTTCACCGCTAGCTTTGTATGTTTTAATGTTCGTT
TGAGCTATCAATAAGTTTGAAACTCTCGAATAGCACAAAATATTGAAGAC
AAGCAAAAACGATCTTTTTCTTCCTGTTCTTGAAATTTCTACTCTAAGTA
GATTACATCTAATCAGCCCTCTGTTTATTTTTTTTAGAGGAGAAAACCTA
CCACAGTCTCATCGAGATGGCTGGAGATTCATTGGACATTCTACCACCAT
CTAAACCACCGGAACCGGTCATCCAACAACCCAACATTCACCTTACTGGT
CATCTAGAGACTGACGGTGCACGTCCCATTAATAAAGCACCTTCTAATCT
TTTCGAACAACTATCTGGTCCTGCACCACCGACCAGTTCCCAAAACCTCT
TTCAGTCACCGAGTTTCCCAGACACCAGTAATCCGTTCCGATCATCTCCA
GCTGCCACCGGATCACTTTTCAATAACCCGATTCCAACACTTAACCAAGT
GCAATATCCAATCGGAAACCCTATTCCGACACTTCCACAGACCAGAAATC
AAATACCTACCCTACCTTTCGGAGGTGGGAGCCCGCAACAGCCTAGGATT
AGTACCTCTCCCTACTCAACACCACCCGGCCTGTTTCCCAATCCACGAGC
ACTCCTTCCTACACCACCACCATCTACTAGCGATCCAATTATGATGATTT
CACCATCATGTCAACCTTTTCAACTCATTAGCCATCCAGCAAACGAAACG
ATGAAACCAACTCCTGCTAATCGACCAGTACCTGCACCAAGGAAGAACAT
CCCTCAAAGTAAGACGAGATATTCTCAGTATCAACCCATTGTGTTGTTTT
TGTGCTCCCAGATTTGGTTATACAAACTGCAGTTGATGGACAGTGTTTAT
GTTTTAATACATGATCCAAATTCTTTTTAATTGATCCAGCTTTGACCTCT
TCCCATATTTTGGAGTTGTTCGAAGATTTTTTGAGCACTAGCTTAGGTGA
TATTTTCTTTATTAATACCTTCTCTAGAGTAAAAATCCGGTAAGGTTTAT
CAGCTTAATTCGTTGAGTACCACCGGTATCGTATGAGTACGCTCGATTTT
TTTCGGTCCTGTACCGGTAGGTCTATACCTCGCGCGACCCATGTCATGTT
TTTTACCCCGTCCGAATAAGAAAGTCGAGACGAGATTTACATTTTTATTA
GTTTCGCGCATCTGAAATCAAAACATCATTTGAAAATTCCACGTGGTACT
AGGGATCCAACCCTTAAGATCTGCGGCATCTTTCGTGGGGTCGCGATTTA
GGCCTGGCAAAAGTTTTTTATGGCAAAAAAACGGACGCTGTAGGCAAGAC
ACCTAACCCCCTAAAATGAGTAAAACATTGACGATGATAGGTAAATATAT
GATATGTTAAATCCAGAATTCCTTTTCACGTATTTTTAACCCCGTCCGAA
TAAGAAACTAAGTCGTGATTGACATTGTTTATAGTTTGGGTGTTTATAGT
TAGGTCAGTGGCTATACCCAGAATTCCTTTTCACCTTTTCCAGGCAAGAC
AGCAAAGTATCACGAGGTTGGTACTCTATGGTTGGTTTTAATGAGAGGAT
TACCCGGTTCTGGTAAATCACATCGATCAAGGTTTGTTGACTATTTCTAA
GTTATTTTGTGTTCAGTTGAGATTATCCTGGTACAGCTTACTGATTGAGA
CCTATATTTTTAGAACGAGATACCTTATCGGGGAAAGAAATGTCGGGGGA
AAGTGACAAAAATTTTAAGGAGGTGACGAAATTAAAACCCTCGTACTCTA
CCGTGCCGAATTAATGCCCCCCCCCAGTTATTTAATTTTAGAAAAATGTT
CGGGGTCCCCCCCCCCCATTGATTTTTGAGAGCAAGAAGACTGGCAGTGT
CCGGTGAAATAGTCCACGTACTTGTCTAAGAATTTCCTTCTATTCTGCTC
GATCGACTCTAAACTATTTAATCCCCAAAGTAGCCCTTAGCCCTTAGCCC
TTAGCAACTACAGACATGTATTATTTTCTGTTTTTAGGGAGATAGCTGGA
GGACGTGGTGTAGTTTTATCTACGGATGACTACTTCATGAATAATGGGAG
GTAAA

Coding sequence (CDS) from alignment at scaffold_20:63880..66234-

>TCONS_00051228 ID=TCONS_00051228|Name=TCONS_00051228|organism=Clytia hemisphaerica|type=CDS|length=3696bp|location=Sequence derived from alignment at scaffold_20:63880..66234- (Clytia hemisphaerica)
GGAGATAGCTGGAGGACGTGGTGTAGTTTTATCTACGGATGACTACTTCA
TGAATAATGGGAGGTAAGCAAGACAGCAAAGTATCACGAGGTTGGTACTC
TATGGTTGGTTTTAATGAGAGGATTACCCGGTTCTGGTAAATCACATCGA
TCAAGAGGAGAAAACCTACCACAGTCTCATCGAGATGGCTGGAGATTCAT
TGGACATTCTACCACCATCTAAACCACCGGAACCGGTCATCCAACAACCC
AACATTCACCTTACTGGTCATCTAGAGACTGACGGTGCACGTCCCATTAA
TAAAGCACCTTCTAATCTTTTCGAACAACTATCTGGTCCTGCACCACCGA
CCAGTTCCCAAAACCTCTTTCAGTCACCGAGTTTCCCAGACACCAGTAAT
CCGTTCCGATCATCTCCAGCTGCCACCGGATCACTTTTCAATAACCCGAT
TCCAACACTTAACCAAGTGCAATATCCAATCGGAAACCCTATTCCGACAC
TTCCACAGACCAGAAATCAAATACCTACCCTACCTTTCGGAGGTGGGAGC
CCGCAACAGCCTAGGATTAGTACCTCTCCCTACTCAACACCACCCGGCCT
GTTTCCCAATCCACGAGCACTCCTTCCTACACCACCACCATCTACTAGCG
ATCCAATTATGATGATTTCACCATCATGTCAACCTTTTCAACTCATTAGC
CATCCAGCAAACGAAACGATGAAACCAACTCCTGCTAATCGACCAGTACC
TGCACCAAGGAAGAACATCCCTCAAAAAAAAAATAAAACGGGGAAGAAAA
ATAGCAATGGATAGTGACAGTATCAAGAAGAAAAATGAACTTAAAAAGAA
GTATTATGAATTATTTCATGGGAAAGTTGATAAGGAGATAATTGATGTTG
TACTTGCAACCTGTGAATATAATGGGAGATAGCTGGAGGACGTGGTGTAG
TTTTATCTACGGATGACTACTTCATGAATAATGGGAGGTAAGCAAGACAG
CAAAGTATCACGAGGTTGGTACTCTATGGTTGGTTTTAATGAGAGGATTA
CCCGGTTCTGGTAAATCACATCGATCAAGAGGAGAAAACCTACCACAGTC
TCATCGAGATGGCTGGAGATTCATTGGACATTCTACCACCATCTAAACCA
CCGGAACCGGTCATCCAACAACCCAACATTCACCTTACTGGTCATCTAGA
GACTGACGGTGCACGTCCCATTAATAAAGCACCTTCTAATCTTTTCGAAC
AACTATCTGGTCCTGCACCACCGACCAGTTCCCAAAACCTCTTTCAGTCA
CCGAGTTTCCCAGACACCAGTAATCCGTTCCGATCATCTCCAGCTGCCAC
CGGATCACTTTTCAATAACCCGATTCCAACACTTAACCAAGTGCAATATC
CAATCGGAAACCCTATTCCGACACTTCCACAGACCAGAAATCAAATACCT
ACCCTACCTTTCGGAGGTGGGAGCCCGCAACAGCCTAGGATTAGTACCTC
TCCCTACTCAACACCACCCGGCCTGTTTCCCAATCCACGAGCACTCCTTC
CTACACCACCACCATCTACTAGCGATCCAATTATGATGATTTCACCATCA
TGTCAACCTTTTCAACTCATTAGCCATCCAGCAAACGAAACGATGAAACC
AACTCCTGCTAATCGACCAGTACCTGCACCAAGGAAGAACATCCCTCAAA
AAAAAAATAAAACGGGGAAGAAAAATAGCAATGGATAGTGACAGTATCAA
GAAGAAAAATGAACTTAAAAAGAAGTATTATGAATTATTTCATGGGAAAG
TTGATAAGGAGATAATTGATGTTGTACTTGCAACCTGTGAATATAATGGG
AGATAGCTGGAGGACGTGGTGTAGTTTTATCTACGGATGACTACTTCATG
AATAATGGGAGGTAAGCAAGACAGCAAAGTATCACGAGGTTGGTACTCTA
TGGTTGGTTTTAATGAGAGGATTACCCGGTTCTGGTAAATCACATCGATC
AAGAGGAGAAAACCTACCACAGTCTCATCGAGATGGCTGGAGATTCATTG
GACATTCTACCACCATCTAAACCACCGGAACCGGTCATCCAACAACCCAA
CATTCACCTTACTGGTCATCTAGAGACTGACGGTGCACGTCCCATTAATA
AAGCACCTTCTAATCTTTTCGAACAACTATCTGGTCCTGCACCACCGACC
AGTTCCCAAAACCTCTTTCAGTCACCGAGTTTCCCAGACACCAGTAATCC
GTTCCGATCATCTCCAGCTGCCACCGGATCACTTTTCAATAACCCGATTC
CAACACTTAACCAAGTGCAATATCCAATCGGAAACCCTATTCCGACACTT
CCACAGACCAGAAATCAAATACCTACCCTACCTTTCGGAGGTGGGAGCCC
GCAACAGCCTAGGATTAGTACCTCTCCCTACTCAACACCACCCGGCCTGT
TTCCCAATCCACGAGCACTCCTTCCTACACCACCACCATCTACTAGCGAT
CCAATTATGATGATTTCACCATCATGTCAACCTTTTCAACTCATTAGCCA
TCCAGCAAACGAAACGATGAAACCAACTCCTGCTAATCGACCAGTACCTG
CACCAAGGAAGAACATCCCTCAAAAAAAAAATAAAACGGGGAAGAAAAAT
AGCAATGGATAGTGACAGTATCAAGAAGAAAAATGAACTTAAAAAGAAGT
ATTATGAATTATTTCATGGGAAAGTTGATAAGGAGATAATTGATGTTGTA
CTTGCAACCTGTGAATATAATGGGAGATAGCTGGAGGACGTGGTGTAGTT
TTATCTACGGATGACTACTTCATGAATAATGGGAGGTAAGCAAGACAGCA
AAGTATCACGAGGTTGGTACTCTATGGTTGGTTTTAATGAGAGGATTACC
CGGTTCTGGTAAATCACATCGATCAAGAGGAGAAAACCTACCACAGTCTC
ATCGAGATGGCTGGAGATTCATTGGACATTCTACCACCATCTAAACCACC
GGAACCGGTCATCCAACAACCCAACATTCACCTTACTGGTCATCTAGAGA
CTGACGGTGCACGTCCCATTAATAAAGCACCTTCTAATCTTTTCGAACAA
CTATCTGGTCCTGCACCACCGACCAGTTCCCAAAACCTCTTTCAGTCACC
GAGTTTCCCAGACACCAGTAATCCGTTCCGATCATCTCCAGCTGCCACCG
GATCACTTTTCAATAACCCGATTCCAACACTTAACCAAGTGCAATATCCA
ATCGGAAACCCTATTCCGACACTTCCACAGACCAGAAATCAAATACCTAC
CCTACCTTTCGGAGGTGGGAGCCCGCAACAGCCTAGGATTAGTACCTCTC
CCTACTCAACACCACCCGGCCTGTTTCCCAATCCACGAGCACTCCTTCCT
ACACCACCACCATCTACTAGCGATCCAATTATGATGATTTCACCATCATG
TCAACCTTTTCAACTCATTAGCCATCCAGCAAACGAAACGATGAAACCAA
CTCCTGCTAATCGACCAGTACCTGCACCAAGGAAGAACATCCCTCAAAAA
AAAAATAAAACGGGGAAGAAAAATAGCAATGGATAGTGACAGTATCAAGA
AGAAAAATGAACTTAAAAAGAAGTATTATGAATTATTTCATGGGAAAGTT
GATAAGGAGATAATTGATGTTGTACTTGCAACCTGTGAATATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032472XLOC_032472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051228-exon-scaffold_20-1575043694:66086..66234TCONS_00051228-exon-scaffold_20-1575043694:66086..66234Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1575043694:65177..65797TCONS_00051228-exon-scaffold_20-1575043694:65177..65797Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1575043694:64354..64441TCONS_00051228-exon-scaffold_20-1575043694:64354..64441Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1575043694:63880..63947TCONS_00051228-exon-scaffold_20-1575043694:63880..63947Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1510915933:66086..66234TCONS_00051228-exon-scaffold_20-1510915933:66086..66234Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1510915933:65177..65797TCONS_00051228-exon-scaffold_20-1510915933:65177..65797Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1510915933:64354..64441TCONS_00051228-exon-scaffold_20-1510915933:64354..64441Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1510915933:63880..63947TCONS_00051228-exon-scaffold_20-1510915933:63880..63947Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1491911889:66086..66234TCONS_00051228-exon-scaffold_20-1491911889:66086..66234Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1491911889:65177..65797TCONS_00051228-exon-scaffold_20-1491911889:65177..65797Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1491911889:64354..64441TCONS_00051228-exon-scaffold_20-1491911889:64354..64441Clytia hemisphaericaexon
TCONS_00051228-exon-scaffold_20-1491911889:63880..63947TCONS_00051228-exon-scaffold_20-1491911889:63880..63947Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051228-proteinTCONS_00051228-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:63880..66234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81002	3.86013	1.06447	0.822171	7.07313	3.48985	5.61381	8.93025	1.37983	4.92208	3.80993	2.76799	5.10076	4.52377	4.33902	5.98684	2.86817	6.05353	3.48126	1.82144	4.40136	2.31664	2.83669	4.43386	84.7349	31.7194	4.54582	2.72036	2.36155	1.8496
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top