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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051231 ID=TCONS_00051231|Name=TCONS_00051231|organism=Clytia hemisphaerica|type=transcript|length=3015bpRun BLAST on NCBI protein sequence of TCONS_00051231-protein >TCONS_00051231-protein ID=TCONS_00051231-protein|Name=TCONS_00051231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=743bp MNNNNIIPLTTHHDLELRIKCLLLNCQSTLADLLRYFVSQPWEDIQRRPGRun BLAST on NCBI transcript from alignment at scaffold_20:73461..80436- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051231 ID=TCONS_00051231|Name=TCONS_00051231|organism=Clytia hemisphaerica|type=transcript|length=6976bp|location=Sequence derived from alignment at scaffold_20:73461..80436- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_20:73461..80436- >TCONS_00051231 ID=TCONS_00051231|Name=TCONS_00051231|organism=Clytia hemisphaerica|type=CDS|length=22320bp|location=Sequence derived from alignment at scaffold_20:73461..80436- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051231 vs. Swiss-Prot (Human)
Match: N42L1 (NEDD4-binding protein 2-like 1 OS=Homo sapiens GN=N4BP2L1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.307e-33 Identity = 63/160 (39.38%), Postives = 97/160 (60.62%), Query Frame = 3
Query: 2001 SSAKLLFLLRGLPGSGKTTKAMHLTNNAEMGVILAADDYFTNEQGVYTFDKSKIKHAHESCKQRAKSNMEKGVTPICIDNTNTQKYEMKPYVLMAERHGYKVNLVEPTTEWRFDAEICHQKSSKNHSLRVEDVKKMKKRYQRNIKIEDIKNCENP--LNR 2474
S K L+LLRGLPGSGKTT A L ++ +I + DD+F E G Y F+ ++ AHE ++RA+ M G++PI IDNTN +EMKPY +MA + Y+V EP T W+F+ + +++ H + E + +MK+RY+ ++ + + E P +NR
Sbjct: 39 SFRKHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNI--HGVSREKIHRMKERYEHDVTFHSVLHAEKPSRMNR 196 The following BLAST results are available for this feature:
BLAST of TCONS_00051231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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