TCONS_00051295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051295
Unique NameTCONS_00051295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051295 ID=TCONS_00051295|Name=TCONS_00051295|organism=Clytia hemisphaerica|type=transcript|length=1521bp
agaGAGTGTATTTCAGTTCACGTTGGACAAGCTGGTGTCCAAATCGGAAA
CGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGATGGTG
AAATGTCTTCAGACACAACCACCAATGACTCGCTTTCCACTTTCTTCAGC
GAGACGGGGACTGGCAAACGTGTCCCCAGAGCTGTCTTTGTTGACTTAGA
ACCTGCAGTCATTGatGAAGTGCGTTCCGGTACATACCGTTCACTTTTTC
ATCCGGAACAATTGATCACCGGAAAAGAAGATGCCGCAAACAATTACGCT
AGAGGACATTATACTGTCGGCAAAGAATACATTGACCAAACCTTAGACCG
AGTCCGAAAACTGTCCGAGAATTGCACCGGTCTTCAAGGATTCTTGATCT
TCCACTCTTTCGGTGGAGGTACCGGATCTGGATTCTCATCCTTGTTGATG
GAACGTCTCTCCGTCGACTATGGAAAGAAGTCGAAATTAGAATTCGCTAT
CTATCCAGCACCGCAAGTCTCCACAGCTGTCGTTGAACCATACAATTCCA
TCTTGACCACCCACACAACTTTGGAGCACACTGATTGTGCTTTCATGGTT
GATAATGAAGCCATTTATGATATCTGTCGTAAAAACTTAGATATTGAACG
ACCTTCCTACACGAACTTGAACAGATTGATCAGTCAAATCGTCTCCTCAA
TCACAGCTTCCCTTCGATTTGATGGATCCTTGAATGTTGACTTGACCGAG
TTCCAAACTAACTTGGTCCCATATCCCAGAATTCATTTCCCAATGGCTAC
CTACGCTCCAGTTATCTCCGCTGAGAAAGCTTTTCACGAACAGATCACCG
TAGCTGAAATCACCAACGCTTGCTTTGAACCACAGAACCAAATGGTGAAA
TGCGATCCACGACATGGCAAATACATGTCATGTTGTCTACTCTACCGTGG
TGATGTTGTCCCTAAAGACGTCAATGCTGCTATCGCCAACATCAAAACTA
AACGAACCATCCAATTCGTTGATTGGTGTCCAACTGGATTCAAGATTGGA
ATCAATTACCAACCACCATGTGTTGTCCCAGGAGGTGACCTCGCTAAAGT
CCAACGTGCAGTTTGTATGTTGTCTAACACTACTGCTATTGGAGAAGCCT
GGGCTCGATTGGATCATAAATTCGATTTAATGTATGCCAAACGTGCTTTT
GTACATTGGTATGTGGGAGAAGGTATGGAAGAAGGAGAGTTCTCAGAAGC
TCGTGAAGACATGGCCGCTTTGGAGAAAGATTACGAAGAAGTTGGAATGG
ATAGTGGTGACGCTGATGAAGCCGAAGATGATGAATATTAAATGCGAAGG
AGCCAAAGACCAAATATGGAATTGCATGCTTGAAAATGCTCTCCGTCACA
TTGACTATTTAATAAGAATTTGCTACCATCGTGCCGTctgaagttttttt
catttatcattttTGCCATTATTTAATGAACGAGGAGAATAATATTTCAT
TCATTCAAACTATAAATAACG
Run BLAST on NCBI

transcript from alignment at scaffold_200:128050..138479+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051295 ID=TCONS_00051295|Name=TCONS_00051295|organism=Clytia hemisphaerica|type=transcript|length=10430bp|location=Sequence derived from alignment at scaffold_200:128050..138479+ (Clytia hemisphaerica)
agaGAGTGTATTTCAGTTCACGTTGGACAAGCTGGTGTCCAAATCGGAAA
CGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGATGGTG
AAATGTCTTCAGACACAACCACCAATGACTCGCTTTCCACTTTCTTCAGC
GAGACGGGGACTGGCAAACGTGTCCCCAGAGCTGTCTTTGTTGACTTAGA
ACCTGCAGTCATTGGTAAGTGATattcaaaaagatttgaaatgaTTATGC
TTAAATCATTTTAGAACAAGATCCTATGTGTAATAcggtcaactctctct
aattcgaatctctattattcgaatatttctgtaatttgaacaaAAACAAG
ATGCTTTCATTTTTCACCACACTCTCctctaaaattacaaaataagattt
agttattttccttcaaaaatacacaaTGGACAGTTTTCATTCTACCTGTC
ATGGTCTCCTGTTCACATTGCACTATTCCGTTATCTCCTTCATAATTTTC
CATGTTCAAAAACGATATGCTCAATTACGAATGATCCCAAACcaataaaa
acttttcattaTTTCTCACTAAAAGTCTTACACACATTTATAACAACTCT
AATTTAAATTTCACATATTCGATACTTTTTTTAGGCTCGTCATGCTAACA
CGAATTATTTATTTAATGATAGATCTCAATCTCATATCATCTTTGGAGAT
TCCGCGACCACATGCTAAATTATGTTTGAGTTGTCCACAAGCTCCTATGC
TCTCAAGGTTCCAAATATTAAAACGATATATTTAATTATGAATAATCATG
ATTtgcatataaaaatatttttcgtactCCATTACCACATTTTCTCGCTA
AAAATATGCAACATGACCCAAATTCATCTATCATATTTATGGATTGATGA
ACATATATGGATTGACAAGTTTGacacattttccttcaaaaatacacgaT
GGCCTTTTTCATAATATTATTAGCCTTCTCacatgaatttatttttttat
cacaCCTTCCTTCAAATATACAAAATaagtataaaaaaattctacacatt
ttccttcaagaatacacaATCGATAGTTTTCTTTTAATTGTCTGCATTAT
TACGTGATTTCCTccataacttttcaaaaatctaagaTAGTGGGTTTCAG
CCGAACTAATATCTTACTAACCCATAACCACTTTTATCCATGACAACTAC
TTTAGCTTTTCTCGATGTGCACGACCCGCAAACCTCATAAATTTCGGTTA
CATGCAGGATAACCCCTTCATGATACCGGTTTTTATGATGGTTTTTTTTA
ATGTGAGGTTACCTCTGTTTGATCTGTTTAATTGGATTCAGCATGACTTA
TTCACCTCAAACTTACTGATTTATAATCGAGTGTCTGGTTTTTTTCCTCA
AACATTATACACTACTAGAAGAACCAGTTCTCCATTTTTAGGTGAACCTT
ACACATGAACCTTTTTCAAGtcttaatgaaaattttcatcttttaatatg
ttttattatatagatGAAGTGCGTTCCGGTACATACCGTTCACTTTTTCA
TCCGGAACAATTGATCACCGGAAAAGAAGATGCCGCAAACAATTACGCTA
GAGGACATTATACCGTCGGTGAGAATTAAATCTTTTTATCCTTTAAGAAT
GATGTCAAGTTTTCTATCTCTTTCAGCTAAAATCAACAAATAACGAATTT
CAAACTCTCTATACTCATCCAGGGTAAAAGAACACAAAAAATCCATCTAT
TGATTCTACCTAAAAGAGTGAATCTAGAATTAGTCAAAAAGAGCGAGTGC
CatcctttttttctaaaatctgaGTCGTTGAATACTCAAATAAATGAGCA
GGTCGAGTTTGCTAAGTCCATTGAGGAATTCTCTGATATATTCACATCTT
AGGGAAGGAGTATATTGATCAAACATTGGATCGAATCCGCAAATTATGCG
ATCTTTGCACCGGTCTTCAGGGGTTCTTGATTTTTCATTCGTACGGAGGA
GGAACTGGGTCCGGCTTCACATCCCTTCTCATGGAACGTTTATCAGTGGA
ATATGGAAAGAAAGCTAAGCTAGAATTTTCTATCTACCCTTCTCCAAAAG
TTTCCACCGCTGTCGTTGAACCTTACAATGCTATTCTTACAACCCACACT
ACCTTGGAGCACTCAGATGTCGCTTTCATGGTTGATAATGAAGCTATCTA
CGATATTTGCAAACGTAATTTAAGTGTTGATCGTCCATCATATTTCAATC
TGAACCGTTTGATTGGTCAAGTGGTTTCCTCTGTTACAGCTTCCTTGAGA
TTCGAAGGAGCTTTAAACGTCGATCTGAATGAGTTCCAAACAAACTTGGT
CCCATACCCCAGAATCCATTTCCCAATTACGTCATTTGGTCCTATCATGT
CAGCTGAAAAAGCGTCTCACGAAAATCATAATGTCCAAGAAATCACCAAT
GCTTGTTTTGAACCACAGAATCAAATGGTGAAATGCGATCCTCGACATGG
GAAATACATGGCTTGTTGTCTTCTATACCGTGGCGAAATCGTCCCCAAAG
ATGTCAACACCGCAATTGCTCAAATCAAGACCAAACGAACCATCCAGTTT
GTGAATTGGTGCCCAACTGGATTTAAAGTTGGGATCAATAACAATGCCCC
TGTCGTTGTTCCTGGAGGTGATTTAGCTCAAGTCAAGAGGGCTGTTTGTT
CCTTAGCTAATACGACTGCTATTGCTGAAGCCTGGTCAAGTCTCGATCAT
AAGTTCGATTTGATGTATGCTAAACGTGCTTTTGTACATTGGTATGTCGG
TGAAGGTAAGAGAATAATGAGAATAACCCTGTCTCAAGAGTTAGAATTCT
CAGTATAGTACTGTATTGAGGAAGGAAACCATAGTCTTAATGGCAGACCT
CTTCAAAGCTACAGGTAGGGTATAACAGGCCCGAccgaagcggggagact
ggggagactggggagacttcagcctccccagtTTTGAGCAAATAGAAttc
ttttctcaaattcctagcaaattttatctcattttgagccttcagcctcc
ccactttaacggttgttccgccggacTTGTAAGGATACAAGATTTCAGCA
TTCTAACGAGGCGCCAATACCAACCAAAGCTTTGATCAATACATATTCAC
AGCGGGTCATGTATTACTTTTAATTgggcttttaattttttggttaACCT
TCTCACTCTCAGAGCAGTTGAAGGCAGTGAATGATTTTACTTGTTGCTTG
AATCGAATGAGATTGgctcagatgagatggagttgttgtaaaaactccat
cttgtCCCTATTAGGTAGGTTGGTTTATTCACACTATTATCTGTACTGAT
TTCCTTATCTAGGTATGGAAGAAGGAGAGTTCTCCGAAGCTCGTGAAGAT
TTAGCCGCCTTGGAAAAAGATTACGAAGAAGTTGGAATGGATAAtgttga
tgaagaagaagatgatgaacttttttaaatgacgAGATTGCTCTATTGGA
ATGATATTCTCGAAGAGAACTAGAAACTTCGTACTACTTGGTATACACTT
TTTGTTAAAGATCCagtaaatttttattcaaattttgctgTTCTAATTTT
TTGAAAGCCTCAAATTGCATTATAATGTTCTCATCTTGTCTTATTTTTAG
GACAAAAGTGGggcatttttttatcaaaattgtgtTTAAGGTGTTACGCT
TTATAGCCGATTTTTGtcttttgacacttttttgCTACAAATTCAGCaat
tccaggctcagcattATTGAGGATTTCGAGCAtcgttgttttgaaaaatt
tattcttataaaaagcgagTTTAGCTTACGAGGATGGCTCAATGCTTTGA
ACTTTCACATCTCAGTTAAATTGGTAAAATATTatgtttttgctgttttt
gctaTTGTATATAGATGAAATACTGTAAGTGAACACATCGTTTCCTTTCg
taatttattctttttttaaatgtttttgtaaaatttgaaatgaaaagaat
TGATGTCATGTCATTTCTAACCAAGCTGTTTTACGAGCCTTCGTTTTTAG
AAAAACTCTTGCTTTTTACCTATTTGTCCTTTTTATGTGTTAGGTCAAAA
CATTTTCGACTAGGTTATGCATAAATCATGGCTCGTTCTATTCACCAATT
GATTTGATGTCTCCGGAACGTAGTGATTTGAAATGAGGAAAAGATTTGGA
CAAAACAAACAGCTTGAGTTTATTGAtgtaaatgaataaaaatatttcac
agcGGTCCCtttttgttataagaaaaaGCTACAGGCTAGGTTACTGGCTA
AGAACATTATGTTAGATTATAGACCATTCTATATACCCCTTTCATATTCT
TAGAATTATATTGCTAATCGACTTTCTCATTTCAGAAAAAAGTATAGAAA
ATATTGTCCTTCATTTGGTTTCACGTGGATCCTTGGTTCGATGAAGTNtt
ttattcaaattttgctgTTCTAATTTTTTGAAAGCCTCAAATTACATTAT
AATGTTCTcatcttgttcttatttttaggacAAAAGTGGggcattttttt
atcaaaattgtgtTACGGTGTTACGCTTTATAGCCGATTTTTGtcttttg
acactttttgcTACAAATTCAGCaattccaggctcagcattATTGAGGAT
TTCGAGCAtcgttgttttgaaaaatttattcttataaaaagcgagTTTAG
CTTACGAGGATGGCTCAATGCTTTTAACTTTCACATCTCAGTTAAATTGG
TAAAATATTatgtttttgctgtttttgctaTTGTATATAGATGAACTACT
GTAAGTGAACACATCGTTTCCTTTCgtaatttattctttttttaaatgtt
tttgtaaaatttgaaatgaaaagaatTGATGTCATGTCATTTCTAACCAA
GCTGTTTTACGAGCCTTCGTTTTTAGAAAAACTCTTGCTTTTTACCTATT
TGTCCTTTTTATGTGTTAGGTCAAAACATTTTCGACTAGGTTATGCATAA
ATCATGGCTCGTTCTATTCACCAATTGATTTGATGTCTCCGGAACGTAGT
GATTTGAAATGAGGAAAAGATTTGGACAAAACAAACAGCTTGAGTTTATT
GAtgtaaatgaataaaaatatttcacagcGGTCCCtttttgttataagaa
aaaGCTACAGGCTAGGTTACTGGCTAAGAACATTATGTTAGATTATAGAC
CATTCTATATACCCCTTTCATATTCTTAGAATTATATTGCTAATCGACTT
TCTCATTTCAGAAAAAAGTATAGAAAATATTGTCCTTCATTTGGTTTCAC
GTGGATCCTTGGTTCGATGAAGTCTTATTGGTTGGTTCCAGTGTCCAGTA
GTCTTCTTTAGGAGCTGTAAGTTAACAccttaattataagaatatcttac
tTTTTGACAGAGGCTTACAAATAAAAGATGCGTTTTATTATTATATGcat
atttgaatttttcatgGGGTTTTCTTATTGTCTCATCACAAACGACATAA
TCTTATAATTAGATCTTTGTTATCACTCGTAATACTCATTATGTTGGAGA
GCTATAGATAAAATGTCTCCTATTTGTTGATAAATAAGCCGCCAACAATA
GGAAAACAACCAATTAGAAACGAGTattgtctaccattttgaattcaCAA
ACGTGGCTTTTATATGTAATGAAGTAATGAAGTGAGTTTTAaagtttgac
atttttgaatttcgttTCAATACGTTAAACGCTCACTGGAGGAAAAACTT
TTATCGTTACTATAGTTTTTTACTAGTTTGCAAAAATGGTGAGTTTTCGC
ATTTTTTGGCTCGTTTGCTAAAAATGACCATTTAGTCACTTGAAGATTGT
TGATGCATTGTTGAGAACAATAGATATTCGATTTCGAACAATAGCCAACT
ATAACGAAATATATTTTGTAGAATTTGACGGCGTGGACGTTCTAAAAGCA
GCCTAACTgactaaatatttcttttttctcagaGAGAGTGTATTTCAGTT
CACGTTGGACAAGCCGGTGTCCAAATCGGAAATGCTTGTTGGGAATTATA
TTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGATAAAA
CCATTGGAGGGGGAGATGATTCATTCAACACTTTCTTCAGTGAGACTGGT
TCTGGTAAACACGTCCCCAGAGCTGTTTTCATCGATCTTGAACCCTCAGT
TGTTGGTAAGAGCCAAAGTTATTTAATAAACTAATTCTTATTTTTCTGCT
CACTGTATTTTGTTTGGTATAGACACAGCGATATTACAAAGATGTCTCTC
GTAAAGCTTTAAACCCCTTGTCAattaattcttgatatgcgtaagtcatt
tttctagcggaaacacccgaaaaaatccgggatttgacccctctctgtta
ctaaaaatagaaacacagaggtcaaaatccggcttttttgggtgcttccg
ttaaaaatatgacgtcatcttgacttacgcatatcaagaataagaGAATT
TAAACCTTAGACGGCATTCCAAACATTTACAATTTGGGACGGGCTTAAGA
CTGAAAACATCCGTTTAGATCAGCTTTTTCTGACGATGATGGTATAATAA
CATTGTTGGTACTGCCTCAGTAATACTATTAGAAAGTAATTCATGCCAAA
CTGTACCACGATGCTAATGAAATTTCTCTTCACGTGAAACGCCCTGTTTG
CCATTCAAAATGAACATTAATTTTCCCTCTTTGTTATCTACTAATTAATT
TGCTTGCATGGAAAATAATGCGGTTACCATAGCAACTTGATTGCTAGGAG
GTATACAAAACAACGTATTTCTATAGATTCATATGTTTTGATTCCACGCC
TTATCGAGAATAATATTTGCGCTTTTAGAAGCGTTAGGTCACACGGTTTC
TAAgagattttcaacaaaaaactttttacacttttttcataaGGTATCAA
AATCTAGCTGCCTACttttagtagagggcattttgtaaaatcgctcgact
gttttgttagaagcacttgttatacatctttggaaagctaaggggtaggg
gaatcgaaatttctatgtttccaattttttttcggacactttggtgtgat
tttcggacaaatatgacggtctcaggcaaaaatcatagggttaaaaatta
atgaaaattttagctcgagaaaattgaaacctgttgtatatttttggaaa
gctctcaaaaaaataggattagagatatattgcaagtataggtgatttca
gtacctaactcgagatattgagcttcaaaaagcgcaaaaactggacaaaa
tagctgtttctggctgaaaaacacggttttcaagggttaatatctcgagt
taggtacaaaAATCACCTaaacttgcaatatatctctaatcttatttttt
tgagagctttccaaaaatatacaacaggtctccgttttctcgagctaata
ttttcattaatttttaaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcccctaccccttag
ctttccaaaaatgtataacaagtgcttctaacaaaacagtcaagcgattc
caaaaaatcgaacaaaattccccctactatttcTTACAAATccctgaaag
tttttttctttcaaatcttttaCTTATTCATgaaattcatgacgtaatgt
ttttaacggaaataccccggtttaaGCAAGTAGTGACAAATTTAAACCAG
ACAAAAGTTACATGAAATTTGCTACttctggcaaaaaccggggtctttcc
gtagaaatcattacgtcattaatatcatgaatacgtaACAGAATAACATT
CTTTCTTGTACATAATAGCTTTTGGAAATCCTTGCTAAATCTTCTAATTA
AACTTCGTTACCGCCCTAGCAATTCAAAAAGGATGAGTCTTTATACCGTC
TAATTGCCgtctttttgaaaaacattcttTGACATATGTTATCAAAATTG
ATATATCTTTTACTTCATAATTGTAAAGCTGTATGGCTCTTGCAATATGC
ATTTGCTCGAAATTTGTTGCCAAATTTTTAGCAACCTCCTGTTTTGTTCT
CTAATCACCCAAAAACCTCATTAAGCAATTAATTATATTTCGACCTCATT
AACGAGCTATATCTTCTATTTTGTAGACGAAGTGCGTACCGGTACATATC
GTTCACTTTTTCATCCGGAACAATTAATCACCGGAAAAGAAGATGCCGCA
AACAATTACGCTAGAGGACATTATACTGTCGGTGAGgatttttttgatat
ttgaagttaaattattattgatgtttgtaaaagaattttgatattttacc
tCGTGGATTTTGCACTCTATTGCAGAGAAAATTCATGAAGACACTAATCT
GACGATATTGTCTTTATAATTACCGTCTAGCTTCAAATGGAAAATTCGCC
AACCTGTTAATGACCTTCTTTTTCTCTCTCTTAGGCAAAGAATACATTGA
CCAAACCTTAGACCGAGTCCGAAAACTGTCCGAGAATTGCACCGGTCTTC
AAGGATTCTTGATCTTCCACTCTTTCGGTGGAGGTACCGGATCTGGATTC
TCATCCTTGTTGATGGAACGTCTCTCCGTCGACTATGGAAAGAAGTCGAA
ATTAGAATTCGCTATCTATCCAGCACCGCAAGTCTCCACAGCTGTCGTTG
AACCATACAATTCCATCTTGACCACCCACACAACTTTGGAGCACACTGAT
TGTGCTTTCATGGTTGATAATGAAGCCATTTATGATATCTGTCGTAAAAA
CTTAGATATTGAACGACCTTCCTACACGAACTTGAACAGATTGATCAGTC
AAATCGTCTCCTCAATCACAGCTTCCCTTCGATTTGATGGATCCTTGAAT
GTTGACTTGACCGAGTTCCAAACTAACTTGGTCCCATATCCCAGAATTCA
TTTCCCAATGGCTACCTACGCTCCAGTTATCTCCGCTGAGAAAGCTTTTC
ACGAACAGATCACCGTAGCTGAAATCACCAACGCTTGCTTTGAACCACAG
AACCAAATGGTGAAATGCGATCCACGACATGGCAAATACATGTCATGTTG
TCTACTCTACCGTGGTGATGTTGTCCCTAAAGACGTCAATGCTGCTATCG
CCAACATCAAAACTAAACGAACCATCCAATTCGTTGATTGGTGTCCAACT
GGATTCAAGATTGGAATCAATTACCAACCACCATGTGTTGTCCCAGGAGG
TGACCTCGCTAAAGTCCAACGTGCAGTTTGTATGTTGTCTAACACTACTG
CTATTGGAGAAGCCTGGGCTCGATTGGATCATAAATTCGATTTAATGTAT
GCCAAACGTGCTTTTGTACATTGGTATGTGGGAGAAGGTAAGAAACCGAG
GTTTTTTATCATGGAATCCTGTTTATTTCATCTTTCAAGTTAGTCTTTTT
GCAAAAGTGAGaaacattttgttttaaaaagttcttttaCCGCAAGGATC
CCGTGACGTTTGAAATTTGTATTAGACCATAGCCTACAAAGTCAACATTC
GTTGGTTTCATCTTAACCaattacaatcatggtcgaaatctattgagaat
taagcttatttcctcgttttttgaaatttggagttcgggcgagaaagttg
attttgggccatctctcaaatttcggatatttcaatttggctcgggttta
tagaccTCCAGACTATactatattatgagccttattggaccatttttgaa
catttttgaacatttggatcctcagatcctaaggtgctaagtcttaagtc
tcgtgttaaaactcagagttaaaactctacccttccaacctactttagag
cacttacaaatcgattgtggtttcaaaacttcccggtggatttccctttt
tttctcaaatataacgaccatgattgtagcattCAGTTTCGGATGttatt
aaccaatcaaattttatttctaATCGCTTAGGTATGGAAGAAGGAGAGTT
CTCAGAAGCTCGTGAAGACATGGCCGCTTTGGAGAAAGATTACGAAGAAG
TTGGAATGGATAGTGGTGACGCTGATGAAGCCGAAGATGATGAATATTAA
ATGCGAAGGAGCCAAAGACCAAATATGGAATTGCATGCTTGAAAATGCTC
TCCGTCACATTGACTATTTAATAAGAATTTGCTACCATCGTGCCGTctga
agtttttttcatttatcattttTGCCATTATTTAATGAACGAGGAGAATA
ATATTTCATTCATTCAAACTATAAATAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032509XLOC_032509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051295-exon-scaffold_200-1491911889:128050..128263TCONS_00051295-exon-scaffold_200-1491911889:128050..128263Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1510915933:128050..128263TCONS_00051295-exon-scaffold_200-1510915933:128050..128263Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1575043694:128050..128263TCONS_00051295-exon-scaffold_200-1575043694:128050..128263Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1491911889:129563..129655TCONS_00051295-exon-scaffold_200-1491911889:129563..129655Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1510915933:129563..129655TCONS_00051295-exon-scaffold_200-1510915933:129563..129655Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1575043694:129563..129655TCONS_00051295-exon-scaffold_200-1575043694:129563..129655Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1491911889:136469..136480TCONS_00051295-exon-scaffold_200-1491911889:136469..136480Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1510915933:136469..136480TCONS_00051295-exon-scaffold_200-1510915933:136469..136480Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1575043694:136469..136480TCONS_00051295-exon-scaffold_200-1575043694:136469..136480Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1491911889:136684..137586TCONS_00051295-exon-scaffold_200-1491911889:136684..137586Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1510915933:136684..137586TCONS_00051295-exon-scaffold_200-1510915933:136684..137586Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1575043694:136684..137586TCONS_00051295-exon-scaffold_200-1575043694:136684..137586Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1491911889:138181..138479TCONS_00051295-exon-scaffold_200-1491911889:138181..138479Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1510915933:138181..138479TCONS_00051295-exon-scaffold_200-1510915933:138181..138479Clytia hemisphaericaexon
TCONS_00051295-exon-scaffold_200-1575043694:138181..138479TCONS_00051295-exon-scaffold_200-1575043694:138181..138479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:128050..138479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.916621	1.15474	38.744	40.1685	35.0516	17.7134	29.8649	20.5497	77.5998	83.5188	72.6722	62.7352	111.01	110.421	122.337	193.712	20.4122	25.9419	9.35132	13.2606	14.3469	0.000813769	4.41214	0.862862	0	0.180602
Blast
[Close]
BLAST of TCONS_00051295 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 795.808 bits (2054), Expect = 0.000e+0
Identity = 396/439 (90.21%), Postives = 418/439 (95.22%), Query Frame = 1 
Query:    1 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGEMXXXXXX---XXXXXXXXXETGTGKRVPRAVFVDLEPAVIDEVRSGTYRSLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRVRKLSENCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHTDCAFMVDNEAIYDICRKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPVISAEKAFHEQITVAEITNACFEPQNQMVKCDPRHGKYMSCCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKIGINYQPPCVVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGMDSG 1308
            RECIS+HVGQAGVQIGNACWELYCLEHGIQPDG+M SD T    +DS +TFFSETG GK VPRAVFVDLEP VIDEVR+GTYR LFHPEQLITGKEDAANNYARGHYT+GKE ID  LDR+RKL++ CTGLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTLEH+DCAFMVDNEAIYDICR+NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAPVISAEKA+HEQ+TVAEITNACFEP NQMVKCDPRHGKYM+CCLLYRGDVVPKDVNAAIA IKTKRTIQFVDWCPTGFK+GINYQPP VVPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS 
Sbjct:    2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA 440
The following BLAST results are available for this feature:
BLAST of TCONS_00051295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+090.21Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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