TCONS_00051298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051298
Unique NameTCONS_00051298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051298 ID=TCONS_00051298|Name=TCONS_00051298|organism=Clytia hemisphaerica|type=transcript|length=903bp
CAACATCTAGTGTTAATCTCCACTAGCTGTGGCGTGTTAGCAGGGAGGTG
CAACTGTCCCCAAGGCTGCGATTTTGTTGCATCCCGCCACGCTTCTGTAC
aatctttttttgctgaaaagctTTTAAAACTATGGCAACTTTGTATAGTG
TAATTACTTCTGCGAGGTTTGATAAGAGTCTACTGTATGGCTGATATTTT
TGAGATGGAAAAATTTCAGGTGATTATGAACTTCTTCTCATTTCAGAAGT
GCATATGAATAATCATAATACAAACTCatcgtaaaaaaaaacattaacag
ATAATGGCTGCAAATCCGATATCGGCAGACAATCCTCAAGCTCAACAAGC
CAAGAAGGAAATTCTTCTCATATTTGATTTTGATAACACAATCATTGACA
AAAATACAGACTCAGAAATCATTAAAGCACAAAATTTATATGGAAAATGT
TTGTCAGGGGAGAGGTATTTAAAAAACGACCTTGGTTGGGCGGAAACAAT
GTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAAAGGACA
TTGATAAAATTATCGAAGATATACCATTGACTCctggttttgaaaaagtt
tttgaatttttacgtCAGAATCAAGAGAAATGTGAATGCATAATGTTATC
ACATTCGAACAGTTATTTCATAGATTTATTGGTGAAGAAATATTCAATCG
gtgattgttttgattctaTACACACTTACGAAGCAGAATGGATGAAGGAT
GGACCTCTTCTGGTCAAACCTTATCACCCATTCCTTGTCAATTGTCAAAT
TTGCCCTCCAGATTTCTGTAAAGGTGTTTTCGTCGAGACGTATCGTGAAC
AAACAGAATGGTCACGTgatatgaaatggaaaaacattttctatGTTGGT
GAC
Run BLAST on NCBI

transcript from alignment at scaffold_200:173580..175826+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051298 ID=TCONS_00051298|Name=TCONS_00051298|organism=Clytia hemisphaerica|type=transcript|length=2247bp|location=Sequence derived from alignment at scaffold_200:173580..175826+ (Clytia hemisphaerica)
CAACATCTAGTGTTAATCTCCACTAGCTGTGGCGTGTTAGCAGGGAGGTG
CAACTGTCCCCAAGGCTGCGATTTTGTTGCATCCCGCCACGCTTCTGTAC
aatctttttttgctgaaaagctTTTAAAACTATGGCAACTTTGTATAGTG
TAATTACTTCTGCGAGGTTTGATAAGAGTCTACTGTATGGCTGATATTTT
TGAGATGGAAAAATTTCAGGTGATTATGAACTTCTTCTCATTTCAGAAGT
GCATATGAATAATCATAATACAAACTCatcgtaaaaaaaaacattaacag
ATAATGGCTGCAAATCCGATATCGGCAGACAATCCTCAAGCTCAACAAGC
CAAGAAGGAAATTCTTCTCATATTTGATTTTGATAACACAATCATTGACA
AAAATACAGACTCAGAAATCATTAAAGCACAAAATTTATATGGAAAATGT
TTGTCAGGGGAGAGGTATTTAAAAAACGACCTTGGTTGGGCGGAAACAAT
GTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAAAGGACA
TTGATAAAATTATCGAAGATATACCATTGACTCctggttttgaaaaagtt
tttgaatttttacgtCAGAATCAAGAGAAATGTGAATGCATAATGTTATC
ACATTCGAACAGGTGTGTCACCTTGTTGTAAATTCACTTTGCAGGATTAT
TCCGTCTATTAATTTTGAACTTAAAACTTTAGTTTGCAATAAAGCGAAAG
TTAATGAAACCTCTTAAATGCCAATTTTAATGGTTTGGTTCCAGGATAGA
AAACATATTCAAAAATGAGGAACTGTAAATCATGATTTAAGCCAAATATG
TTGAGACACTgctacccagctgacacacaacgttgtttcgacgttcatct
aacgttatatggacgttgtgaacgttaaataaacgttgaaacaacgttgt
gtgtcagttCAGTAGCCAATTCATTACGAACAAGTCGCCATTTGCAATGT
TGCGGTGCCTTTTGGCGGCCAAAGAGTCTTAATGACAATAGGGTAAAGTC
TCGTGCATTCATTGGGAGATTGGAGCTTTTGTCGATTTTGATTTCTCTTG
GCTAAATAACATATAAGAAAAGATAAAATCTTTGCTCAAACATTGTGTTC
CCACTTTTCCATTTCAGTTATTTCATAGATTTATTGGTGAAGAAATATTC
AATCGgtgattgttttgattctaTACACACTTACGAAGCAGAATGGATGA
AGGATGGACCTCTTCTGGTCAAACCTTATCACCCATTCCTTGTCAATTGT
CAAATTTGCCCTCCAGATTTCTGTAAAGGTACAAAAATGTTACAGTTGAC
GCTATCTAATTTGACGTTCTACTGGTACTATTCGTTAAGCTCCATTAttc
aataatattgaaagtcacgaTCAACAAGAAACGCTCATAAACGACAACTT
AACATTTGATATGCTCCTTTATTCGATTAAAATCCGATTCccattgaaaa
tcgaattagagagggtcaACTGTATTCCTAATAATGTTAACACTTTATTT
TTGTAAGACCTTttaataaattacgtcacgagcaacgcttacctcgtttt
caaaatattactttGCTAATCGACTCCTAGGGGTAATTCATTAAACGTTT
ACCCATCTATAATATTAAAATTTACAGACTTGAGGACTATTATGACCTTG
TTAAGTGTTCCAAAACGAGGTAGTCGTTGCACCCaattaatttatgaaaa
ggcctgtTGTGAACTCTTTTTTCTTGTTGAGATATGCGCTGAGCTCCTTA
AGTGAACATAAACCAGTGATgtcgaagggctagaagcgaatcgtTACTCT
TTCTCAGGCAAGGAAAAGTGAAACCTTGAGATATACGCCGTTATTAacga
cggattgaatttagcagtttctttgttttcgagtggtatatatttttttg
aaatctagtagcaaattttactttcaatctggtatttgtataaaaaccac
gcgggtcgctcaaggctcGATCCTACTTAAGTAGGATTTAGCGGCTTCAA
ATTCTACTAGCTTCTGCTAGTCCTTTAGGCCTTGGGCTTTCGACATAGAC
ATGTATACATTGTAcaagcaaaaaagtttttctcaatcCTCTCAGCTTTC
AACGTTGCATTTTCCAGGTGTTTTCGTCGAGACGTATCGTGAACAAACAG
AATGGTCACGTgatatgaaatggaaaaacattttctatGTTGGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032510XLOC_032510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051298-exon-scaffold_200-1491911889:173580..174241TCONS_00051298-exon-scaffold_200-1491911889:173580..174241Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1510915933:173580..174241TCONS_00051298-exon-scaffold_200-1510915933:173580..174241Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1575043694:173580..174241TCONS_00051298-exon-scaffold_200-1575043694:173580..174241Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1491911889:174747..174907TCONS_00051298-exon-scaffold_200-1491911889:174747..174907Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1510915933:174747..174907TCONS_00051298-exon-scaffold_200-1510915933:174747..174907Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1575043694:174747..174907TCONS_00051298-exon-scaffold_200-1575043694:174747..174907Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1491911889:175747..175826TCONS_00051298-exon-scaffold_200-1491911889:175747..175826Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1510915933:175747..175826TCONS_00051298-exon-scaffold_200-1510915933:175747..175826Clytia hemisphaericaexon
TCONS_00051298-exon-scaffold_200-1575043694:175747..175826TCONS_00051298-exon-scaffold_200-1575043694:175747..175826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:173580..175826 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.7231	3.92024	1.5869	0.864233	4.18546	2.95437	8.61914	8.81353	11.2923	4.67373	32.5433	8.54062	7.09527	8.56933	8.10832	18.9847	2.75532	4.68148	12.0216	6.46697	2.26042	2.47765	4.13497	5.29168	17.9596	16.7713	2.29704	1.83971	1.78955	2.49397
Blast
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BLAST of TCONS_00051298 vs. Swiss-Prot (Human)
Match: PHOP2 (Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo sapiens GN=PHOSPHO2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.818e-28
Identity = 62/183 (33.88%), Postives = 103/183 (56.28%), Query Frame = 1 
Query:  358 EILLIFDFDNTIIDKNTDSEIIK-AQNLYGKCLSGERYLKNDLGWAETMSLALADLHQNNISQKDIDKIIEDIPLTPGFEKVFEFLRQNQEKCECIMLSHSNSYFIDLLVKKYSIGDCFDSIHTYEAEWMKDGPLLVKPYHPFLVNCQICPPDFCKGVFVETYREQTEWSRDMKWKNIFYVGD 903
            +ILL+FDFDNTIID N+D+ I++ A N        + Y K    W E M      L    + + ++ + +  +P TPG  ++F F+R+N++K +CI++S SNS FID +++  S  D FD + T  A +  +G L V+ YH    +C  CP + CK V +  + ++ +  + + +  I Y+GD
Sbjct:    2 KILLVFDFDNTIIDDNSDTWIVQCAPNKKLPIELRDSYRKG--FWTEFMGRVFKYLGDKGVREHEMKRAVTSLPFTPGMVELFNFIRKNKDKFDCIIISDSNSVFIDWVLEAASFHDIFDKVFTNPAAFNSNGHLTVENYHTH--SCNRCPKNLCKKVVLIEFVDK-QLQQGVNYTQIVYIGD 179
The following BLAST results are available for this feature:
BLAST of TCONS_00051298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHOP29.818e-2833.88Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo s... [more]
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