TCONS_00051376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051376
Unique NameTCONS_00051376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051376 ID=TCONS_00051376|Name=TCONS_00051376|organism=Clytia hemisphaerica|type=transcript|length=639bp
aaaccATTGAATCAAAGATCTTCTACTCAAGTTTGATTCTCATTGCTGTT
GGGTCAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAgaatcaaaaaac
atttttaacgcATTATACTGAATTTCACACACccaaaatccaacattgtt
tCTCAAAGTGTCATTACGATAAATCATGCTACTCTTTGGAGGTTGTACAG
ACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGATCAAA
CCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGTTGTG
ACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaatgaat
tttatgggTGAAGGCAAAAAAGTGATCCGATGTTATTTTGATGAAGATGG
TGGCTGGCTAGTGTTTCAACGAAGAGTTGATGCTTCAGTGAATTTCAACA
TTGGATGGGATTTCTACAAAAATGGTTTTGGTGACCCAAGAGGGAGCTTC
TGGCTTGGTAACGATCTGATTCACGAAGTGACCAGTCAAGCACAACATCA
AATCAGAATCGTTCTGACCAATTTTACTGGAGGTGTTAGTATTTCAAAAT
ATGATCACTTCGAAGTCGCAAATGAGGCAATGAAATATC
Run BLAST on NCBI

transcript from alignment at scaffold_201:150403..151349+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051376 ID=TCONS_00051376|Name=TCONS_00051376|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at scaffold_201:150403..151349+ (Clytia hemisphaerica)
aaaccATTGAATCAAAGATCTTCTACTCAAGTTTGATTCTCATTGCTGTT
GGGTCAGTTTCAACCAAAAATCTCATCCTCGTTGGCAAgaatcaaaaaac
atttttaacgcATTATACTGAATTTCACACACccaaaatccaacattgtt
tCTCAAAGTGTCATTACGATAAATCATGCTACTCTTTGGAGGTTGTACAG
ACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCGATCAAA
CCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAAGTTGTG
ACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaaatgaat
tttatgggTGAAGGCAAAAAAGTGATCCGATGTTATTTTGATGAAGATGG
TGGCTGGCTAGTGTTTCAACGAAGAGTTGATGCTTCAGTGAATTTCAACA
TTGGATGGGATTTCTACAAAAATGGTTTTGGTGACCCAAGAGGTTGGTTT
TGTACTTTTCTCATgcctttctttttttcaaagtcCGCCCAAAATTGGCT
Gtataacagacggacggacggacggacagacagacggacagacggacaga
cggacagacggacagaTCGGACAGATCGGACAGATCGGACAGATCGGACA
GATCGggcagacagacagacagacagacagacagacagacagacagacag
acagacagacagacagacagacagacagacagacagacagacagacagac
agaaatACCAACTATGCTAATAAATAAACTGTTTGTTTCTATTCTGTTAG
GGAGCTTCTGGCTTGGTAACGATCTGATTCACGAAGTGACCAGTCAAGCA
CAACATCAAATCAGAATCGTTCTGACCAATTTTACTGGAGGTGTTAGTAT
TTCAAAATATGATCACTTCGAAGTCGCAAATGAGGCAATGAAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032556XLOC_032556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051376-exon-scaffold_201-1491911889:150403..150894TCONS_00051376-exon-scaffold_201-1491911889:150403..150894Clytia hemisphaericaexon
TCONS_00051376-exon-scaffold_201-1510915933:150403..150894TCONS_00051376-exon-scaffold_201-1510915933:150403..150894Clytia hemisphaericaexon
TCONS_00051376-exon-scaffold_201-1575043694:150403..150894TCONS_00051376-exon-scaffold_201-1575043694:150403..150894Clytia hemisphaericaexon
TCONS_00051376-exon-scaffold_201-1491911889:151203..151349TCONS_00051376-exon-scaffold_201-1491911889:151203..151349Clytia hemisphaericaexon
TCONS_00051376-exon-scaffold_201-1510915933:151203..151349TCONS_00051376-exon-scaffold_201-1510915933:151203..151349Clytia hemisphaericaexon
TCONS_00051376-exon-scaffold_201-1575043694:151203..151349TCONS_00051376-exon-scaffold_201-1575043694:151203..151349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:150403..151349 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.104794	0	0	0	0	0.139053	0	0	0	0.404051	0.81728	0	9.43516e-06	0.0912049	4.89351e-06	0.378543	0	0.547929	0.350189	0.326497	0	0.487115	0	0	0.120738	0	0
Blast
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BLAST of TCONS_00051376 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.586e-26
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 3 
Query:  291 RSCDDLFDIGIRNAGAYEM--NFMGEGKKVIRCYFDEDGG-WLVFQRRVDASVNFNIGWDFYKNGFGDPRGSFWLGNDLIHEVTSQAQHQIRIVLTNFTGGVSISKYDHFEVANEAMKY 638
            R C D++  G   +G Y +  N M E KKV  C  D +GG W V Q R D S++F  GW  YK GFG+P G +WLGN+ I  +TSQ Q+ +RI L ++ G  + S+YD F + NE   Y
Sbjct:  284 RDCADVYQAGFNKSGIYTIYINNMPEPKKVF-CNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNY 401
The following BLAST results are available for this feature:
BLAST of TCONS_00051376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP18.586e-2643.70Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2[more]
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