TCONS_00055677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055677
Unique NameTCONS_00055677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055677 ID=TCONS_00055677|Name=TCONS_00055677|organism=Clytia hemisphaerica|type=transcript|length=574bp
CTCACCACATCCTTAACATGATTTGATTCTTTTGTGTACCTTCTGACTTT
TTGTGGCAAATTTTTCACTGCAATCTTTGAATACAAAAACCTTTTCTCGT
TTGTGAGTTTTTAAAAGAGTAGCCAAGTTATATTTTTGTGTAAATGATCT
ACCACATTCTTTACACTAAAACTTTGTGGCATTACTATGTTTTTGTAAGA
AATGCTTTTCAAGGAACTCTTTTGTAGTATAACATACGCCACATTTAtta
catttaaaatatttgcttGGTGAATCATTGGTTCGGCTCATCACATTTGC
TGCTCTACTTCCGGTAAATtgtttaccacattcttgatcTTTTCCTGTAT
GAGATCTCAAGTGAATGTTTAAGCACGATTTGTAAGTAAaggatttacca
cattcttcacattgAAAAGGTCTTTCTCCTGTGTGAGTTCTTAAATGGAC
ATTCAAGTTATATTTTTGCGTAAAGTGTTTGCCACAAACAGCATAATTTA
GATTATTAATTAGACGATGTTTTTGAACGAAATGTTGATCAAGGAACTCC
TTTGATGTATAACAAGCACCACAG
Run BLAST on NCBI

transcript from alignment at scaffold_256:40746..41319+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055677 ID=TCONS_00055677|Name=TCONS_00055677|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at scaffold_256:40746..41319+ (Clytia hemisphaerica)
CTCACCACATCCTTAACATGATTTGATTCTTTTGTGTACCTTCTGACTTT
TTGTGGCAAATTTTTCACTGCAATCTTTGAATACAAAAACCTTTTCTCGT
TTGTGAGTTTTTAAAAGAGTAGCCAAGTTATATTTTTGTGTAAATGATCT
ACCACATTCTTTACACTAAAACTTTGTGGCATTACTATGTTTTTGTAAGA
AATGCTTTTCAAGGAACTCTTTTGTAGTATAACATACGCCACATTTAtta
catttaaaatatttgcttGGTGAATCATTGGTTCGGCTCATCACATTTGC
TGCTCTACTTCCGGTAAATtgtttaccacattcttgatcTTTTCCTGTAT
GAGATCTCAAGTGAATGTTTAAGCACGATTTGTAAGTAAaggatttacca
cattcttcacattgAAAAGGTCTTTCTCCTGTGTGAGTTCTTAAATGGAC
ATTCAAGTTATATTTTTGCGTAAAGTGTTTGCCACAAACAGCATAATTTA
GATTATTAATTAGACGATGTTTTTGAACGAAATGTTGATCAAGGAACTCC
TTTGATGTATAACAAGCACCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035034XLOC_035034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055677-exon-scaffold_256-1491911889:40746..41319TCONS_00055677-exon-scaffold_256-1491911889:40746..41319Clytia hemisphaericaexon
TCONS_00055677-exon-scaffold_256-1510915933:40746..41319TCONS_00055677-exon-scaffold_256-1510915933:40746..41319Clytia hemisphaericaexon
TCONS_00055677-exon-scaffold_256-1575043694:40746..41319TCONS_00055677-exon-scaffold_256-1575043694:40746..41319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:40746..41319 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.45746	3.37279	0.678825	0.65574	0.177422	0	0	0.338325	0	0	0	0.236667	0	0.0671336	0.247183	0	0.513068	0.502417	0	0	0.563772	0.412552	2.88564	2.22795	0.471126	1.02146	0	0.318512	0.597707	1.02856
Blast
[Close]
BLAST of TCONS_00055677 vs. Swiss-Prot (Human)
Match: ZN561 (Zinc finger protein 561 OS=Homo sapiens GN=ZNF561 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.442e-30
Identity = 74/188 (39.36%), Postives = 106/188 (56.38%), Query Frame = -2 
Query:   25 CGACYTSKEFLDQHFVQKHRLINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKD----QECGKQFTGSRAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATKF*CKECGRSFTQKYNLATLLKTHKREKVFVFKDCSEKFATKSQ-KVHKRI 573
            CG  + +   L+ H +Q H  I       CGK FT+   L  H+RTHTG +P++C+ECG++F   S L+IH+RSH+GK     +ECGK FT S +    +R + +  K ++C +CG  + T     KH L+ HS    F CK CG++F     L   L+TH  EK FV K+C + FA  S+   H+RI
Sbjct:  286 CGRSFRNSSCLNDH-IQIHTGIKPHKCTYCGKAFTRSTQLTEHVRTHTGIKPYECKECGQAFAQYSGLSIHIRSHSGKKPYQCKECGKAFTTSTSLIQHTRIH-TGEKPYECVECGKTFITSSRRSKH-LKTHSGEKPFVCKICGKAFLYSSRLNVHLRTHTGEKPFVCKECGKAFAVSSRLSRHERI 470

HSP 2 Score: 96.2857 bits (238), Expect = 3.629e-23
Identity = 62/175 (35.43%), Postives = 92/175 (52.57%), Query Frame = -2 
Query:   67 CGACYTSKEFLDQHFVQKHRLINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKDQ----ECGKQFTGS--RAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATKF*CKECGRSFTQKYNLATLLKTHKREKVFVFKDCS 573
            CG  +T    L +H V+ H  I       CG+ F Q   L++H+R+H+G++P+QC+ECGK+FT  + L  H R HTG+      ECGK F  S  R+ ++ + + + P   F C  CG  +     L  H L+ H+    F CKECG++F     L+   + H  EK +  KD S
Sbjct:  314 CGKAFTRSTQLTEH-VRTHTGIKPYECKECGQAFAQYSGLSIHIRSHSGKKPYQCKECGKAFTTSTSLIQHTRIHTGEKPYECVECGKTFITSSRRSKHLKTHSGEKP---FVCKICGKAFLYSSRLNVH-LRTHTGEKPFVCKECGKAFAVSSRLSRHERIHTGEKPYECKDMS 483

HSP 3 Score: 84.3445 bits (207), Expect = 6.106e-19
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = -2 
Query:   40 FTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTG----KDQECGKQFTGSRAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATKF*CKECGRSFTQKYNLATLLKTHKREKVFVFKDCSEKFATKSQK 474
            FT    L   ++TH GE+ F+C+ECG+SF   SCLN H++ HTG    K   CGK FT S       RT+     Y +C +CG  +     L  H ++ HS    + CKECG++FT   +L    + H  EK +   +C + F T S++
Sbjct:  262 FTNFSQLYAPVKTHKGEKSFECKECGRSFRNSSCLNDHIQIHTGIKPHKCTYCGKAFTRSTQLTEHVRTHTGIKPY-ECKECGQAFAQYSGLSIH-IRSHSGKKPYQCKECGKAFTTSTSLIQHTRIHTGEKPYECVECGKTFITSSRR 408
The following BLAST results are available for this feature:
BLAST of TCONS_00055677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5614.442e-3039.36Zinc finger protein 561 OS=Homo sapiens GN=ZNF561 ... [more]
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