|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055916 ID=TCONS_00055916|Name=TCONS_00055916|organism=Clytia hemisphaerica|type=transcript|length=739bp
cttttgcaataaaaaaagatatattgGCAATATCTTTCACCAAAAACATC
GAATTTATATTACTGAGAAGAAAAGCCGCCGATGAAGCTTCAAAAGATAT
ATCCGAAGAGCAGGTTTGATATAAAAAGTGTTATCGTTTGATAAAAATCT
TCATTTGGCAAATCACTTTGTTGTTTAAGTGTTATTTTTTACTCTAACAG
TATAATTATCCAATCTTCAGATCGGCATATCTCTGACCATTGAGTTATGG
ACAATATCACTACTTTCATTCTTATTGGTTGTCTCATTTGTTTATCTTAT
TCGCATGACACAGAAAATTATGAAGAAGAGAAGCCACTGACAACTGATGA
TTTATTTCGAATGATGCATCAATGTAAGAGCAGCAGACGAAAGGGTATGT
GTCAACTACAAGTTCTATGGGCAGCTCTCAAGAATTTCCAACCCAAAGAA
GATAGAAAAGTAAAGGACGAGAGAATATCTGGAACAGATTTTGTGGATGT
TTCCGATATGCCGTTTCATTATAGCGNAGAGAATATCTGGAACAGATTTT
GTGGATGTTTCCGATATGCCGTTTTATTATAGCTCCATGTTGCATGCAAA
GCGAAACCTTGACAAGCGTGTTTCTTCAAGATGTGAATATTGTTTAAAAA
CAACAAGTTATTTATATTGGGGTAAATGTGTAAATGAGTGTGAGGGAACA
TTGTAACCAAAGAATATATCTAAAACAAGTCTCAAAATT Run BLAST on NCBI protein sequence of TCONS_00055916-protein >TCONS_00055916-protein ID=TCONS_00055916-protein|Name=TCONS_00055916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MDNITTFILIGCLICLSYSHDTENYEEEKPLTTDDLFRMMHQCKSSRRKG
MCQLQVLWAALKNFQPKEDRKVKDERISGTDFVDVSDMPFHYSXENIWNR
FCGCFRYAVLL Run BLAST on NCBI transcript from alignment at scaffold_266:45348..46585+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055916 ID=TCONS_00055916|Name=TCONS_00055916|organism=Clytia hemisphaerica|type=transcript|length=1238bp|location=Sequence derived from alignment at scaffold_266:45348..46585+ (Clytia hemisphaerica)
cttttgcaataaaaaaagatatattgGCAATATCTTTCACCAAAAACATC
GAATTTATATTACTGAGAAGAAAAGCCGCCGATGAAGCTTCAAAAGATAT
ATCCGAAGAGCAGGTTTGATATAAAAAGTGTTATCGTTTGATAAAAATCT
TCATTTGGCAAATCACTTTGTTGTTTAAGTGTTATTTTTTACTCTAACAG
TATAATTATCCAATCTTCAGATCGGCATATCTCTGACCATTGAGTTATGG
ACAATATCACTACTTTCATTCTTATTGGTTGTCTCATTTGTTTATCTTAT
TCGCATGACACAGAAAATTATGAAGAAGAGAAGCCACTGACAACTGTAAG
TACTAAACTGAGGCGCTGGATAATGCACGTTTtctttatataagaacaat
tcatgaacatcctgtgcccaagttcaggagttgccataaagccattatgg
taataaccgggagggcacattacTATAGATTATACATTGTATATGAACAA
TTTATGAACATAATGCTTCGATGATCAAAATATTAAGataaagttaagag
catttgaAAGCTTTATTGACCCTGAAACACCTAATTCCATAGGAAATTGC
ATAAAAATtgtgaaataaaaaacattaaGAACATTGATTGATAAGACTAG
TTTTTTTTACCAGTGGAATTCGCCATTGAAACAGGGGTGTGTTTTCACAT
CGGATCCTAAGTTCTTTTGATACAAGCGCACTAATGTTCGAAACTTGGGT
GTTTTAACAAAGTTTCAACTTAAGTTGTCCGTTTTCTGACcgaaaaaaat
ctacttttgtaAAAACATGTCACTTAAATTCTTTTCATTGATAGGATGAT
TTATTTCGAATGATGCATCAATGTAAGAGCAGCAGACGAAAGGGTATGTG
TCAACTACAAGTTCTATGGGCAGCTCTCAAGAATTTCCAACCCAAAGAAG
ATAGAAAAGTAAAGGACGAGAGAATATCTGGAACAGATTTTGTGGATGTT
TCCGATATGCCGTTTCATTATAGCGNAGAGAATATCTGGAACAGATTTTG
TGGATGTTTCCGATATGCCGTTTTATTATAGCTCCATGTTGCATGCAAAG
CGAAACCTTGACAAGCGTGTTTCTTCAAGATGTGAATATTGTTTAAAAAC
AACAAGTTATTTATATTGGGGTAAATGTGTAAATGAGTGTGAGGGAACAT
TGTAACCAAAGAATATATCTAAAACAAGTCTCAAAATT Coding sequence (CDS) from alignment at scaffold_266:45348..46585+ >TCONS_00055916 ID=TCONS_00055916|Name=TCONS_00055916|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_266:45348..46585+ (Clytia hemisphaerica)
ATGGACAATATCACTACTTTCATTCTTATTGGTTGTCTCATTTGTTTATC
TTATTCGCATGACACAGAAAATTATGAAGAAGAGAAGCCACTGACAACTG
ATGATTTATTTCGAATGATGCATCAATGTAAGAGCAGCAGACGAAAGGGT
ATGTGTCAACTACAAGTTCTATGGGCAGCTCTCAAGAATTTCCAACCCAA
AGAAGATAGAAAAGTAAAGGACGAGAGAATATCTGGAACAGATTTTGTGG
ATGTTTCCGATATGCCGTTTCATTATAGCGNAGAGAATATCTGGAACAGA
TTTTGTGGATGTTTCCGATATGCCGTTTTATTATAGATGGACAATATCAC
TACTTTCATTCTTATTGGTTGTCTCATTTGTTTATCTTATTCGCATGACA
CAGAAAATTATGAAGAAGAGAAGCCACTGACAACTGATGATTTATTTCGA
ATGATGCATCAATGTAAGAGCAGCAGACGAAAGGGTATGTGTCAACTACA
AGTTCTATGGGCAGCTCTCAAGAATTTCCAACCCAAAGAAGATAGAAAAG
TAAAGGACGAGAGAATATCTGGAACAGATTTTGTGGATGTTTCCGATATG
CCGTTTCATTATAGCGNAGAGAATATCTGGAACAGATTTTGTGGATGTTT
CCGATATGCCGTTTTATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055916-exon-scaffold_266-1491911889:45348..45692 | TCONS_00055916-exon-scaffold_266-1491911889:45348..45692 | Clytia hemisphaerica | exon |
| TCONS_00055916-exon-scaffold_266-1510915933:45348..45692 | TCONS_00055916-exon-scaffold_266-1510915933:45348..45692 | Clytia hemisphaerica | exon |
| TCONS_00055916-exon-scaffold_266-1575043694:45348..45692 | TCONS_00055916-exon-scaffold_266-1575043694:45348..45692 | Clytia hemisphaerica | exon |
| TCONS_00055916-exon-scaffold_266-1491911889:46192..46585 | TCONS_00055916-exon-scaffold_266-1491911889:46192..46585 | Clytia hemisphaerica | exon |
| TCONS_00055916-exon-scaffold_266-1510915933:46192..46585 | TCONS_00055916-exon-scaffold_266-1510915933:46192..46585 | Clytia hemisphaerica | exon |
| TCONS_00055916-exon-scaffold_266-1575043694:46192..46585 | TCONS_00055916-exon-scaffold_266-1575043694:46192..46585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:45348..46585 + |
Blast
The following BLAST results are available for this feature:
|
