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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051771 ID=TCONS_00051771|Name=TCONS_00051771|organism=Clytia hemisphaerica|type=transcript|length=2266bp
GAAAATTTACACTacctatttttgaattttactcATGTGtgtttatttgt
tttattttacacGCTATGAGTATATGATTATTGTTATGAAATACACTTGG
GGTGGATCTTCTGGGTGTTGTCGGGCAAATTTAGGCGGGGATTTCAGCTT
GCGGGTCGGTTTCCGGCCTGTATCAGCCCGAGAAAGTTTTAACGTTAACT
GCCTTAACTTTCTTGGTGACGTCTGAATTATGTTTTGGTTGTTTCATACC
TTATTATAAATTGGATGGGGGGCCACCACAGCTTGGGTAAACTGTCACGG
TGAAAACCGgggttattttttttataagaaactaacctaagaataccggc
CTCGTGCATTATTCATAGGGTCTGTATGCCTTCTACGGTTTGGATTGTGT
TGTCAAAGTCTGAACATTGCATTAATAGGGATAGGGTCACATTATTTCTT
TTAATAAACAAATTAAttataagcactttttgtatatcattttcatcttt
ttcatttatttttcttttagttgaaagtaaaagagaaaaatataaaaaga
taaaataaattgGAACAACAATGGTGAAACCAAAGCTAAAGAAGACATCT
GCAAAGAAACCAAAGGATAACAAACTGTCAGTACGTGATTCCATCAAGCT
GGCCGTATTGCACCAAGAGCAAGGTGTCAGTTGCTACGAACTGACAAAAC
GCTTTGGCAAAAAGATTCTAGAGCGCACCATCTATCGCCACGCGAAGAAG
CCACTTGACCAGCTGTCCAACAATGTCGATCGCCGTACTAAAAACCCTGG
TAGGCCAAAGAAGGTAGATGCAAGGAGGGAAAGAATCATTCTGCGGTCAC
TGAAGAAACTTTGTACTGAAAGTGTGGCTTTTACGGCTGGTAAAGTATTG
GAGGAATCAAACTTGGCGGAAGAGGGTATAAACAAGCGGGACGTTCAACG
CTGTCTCCGAAAGAACAACTATCGATATTTGCAATCGAGGAAAAAAGGAC
TGCTGATAGGAAACGACAAAACGGTACGAGTCGCTTGGGCAAGGAAGCAT
GTGAAAAACCCTTGAGCTATTGGCGACACAAAGTTAAATTTTATCTGGAT
GGAATCGGTTTCGCCCACAAATCAAACCCCGCTGGAGAAGCACGCGCGGT
CTCATCGATGGTCTGGCGCCAACCTGACGAGGGGTTAGTGTTTACAACCA
AGGGACGGAAAGAAGGAAGCGGAGGTAAGGTGGTGAGTTTTTTCGTAGGG
AACGCTTACAATAAGGGAGTTGTGATGTGTCACCATCACGACTGGAAAAT
AAACGgcaaaaactttgcaaaattcATCAAGACAGAATTTCCGAAAGCAT
AGTAAAAGTGCGGAGCAAAGAAAGGGGACCgcatgtttttgatggatgGC
TGTCCCAAGCAGAACGTTGCACCCTGCAAGCAGGCATGGCAAAGGTTTAA
ATACGAGGTTCAAAAGATTCGGTTCGATCCCCCGATTTAGACGTCATTGA
GAATTTTTTCCATCTGGTCAGAGTAAAATTACGAGACGACGCCAAAGCTC
TCAACATCAGCCGAGAGAAGTATGACGCTTTCATTACCAGGGTAACCAAT
ACCATCCAGAATATGCCAGTGGAGACAatcaacaatttgaaaaaaagtaa
tACTAAGAATTTTTGTCACGTGTATTACTTTTTTAAGATCAGCGTGACGC
ATTTGTGACGCACTTTGAATTTTGATATAACTGGTCTATAACAATCTCGC
TTAGAGTTTTTCCCAGATAGGACTAAGTTTCCGGTTTTtacgaaaaataa
aatcaacgcAACATTTTCCCACAGGGTGTTTTTCAATCGTCCGTGCCCCG
GGTAATCATAATATCAACGCAATATTTCCCACGGGTGTTTTTCAATCGTC
CATACCCCGGGTAATCAGTACACTGAAACAGTGGGGACATTCAGGAATTC
TGCGCAATTCCTCCGGAGGTATTGAGTGTGTAAATTCAATGAAACGTTAA
ACCACTTGGAAAGTGAGAAAGTTCTCATTGAATCACAGCATGGCTTTAGA
AAGCACAGATCCTGTGAGACACAACTTCTGCAAACTGTACATAAACTTGC
TAAAAGTATGAATGATAAAGAACAAGTTGATAGTGTATTGCTTGACTTTA
GTAAGGCTTTTGATAAGGTGGTTCATAGAAAACTCATGATAAAGCTAAGA
CACTACGGTGTCTGTGGAAACATTCATGACTGGATATCAGACTTCCTTTC
TAATCGCACCCAAACC Run BLAST on NCBI protein sequence of TCONS_00051771-protein >TCONS_00051771-protein ID=TCONS_00051771-protein|Name=TCONS_00051771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MVKPKLKKTSAKKPKDNKLSVRDSIKLAVLHQEQGVSCYELTKRFGKKIL
ERTIYRHAKKPLDQLSNNVDRRTKNPGRPKKVDARRERIILRSLKKLCTE
SVAFTAGKVLEESNLAEEGINKRDVQRCLRKNNYRYLQSRKKGLLIGNDK
TVRVAWARKHVKNP Run BLAST on NCBI transcript from alignment at scaffold_204:94606..96871 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051771 ID=TCONS_00051771|Name=TCONS_00051771|organism=Clytia hemisphaerica|type=transcript|length=2266bp|location=Sequence derived from alignment at scaffold_204:94606..96871 (Clytia hemisphaerica)
GGTTTGGGTGCGATTAGAAAGGAAGTCTGATATCCAGTCATGAATGTTTC
CACAGACACCGTAGTGTCTTAGCTTTATCATGAGTTTTCTATGAACCACC
TTATCAAAAGCCTTACTAAAGTCAAGCAATACACTATCAACTTGTTCTTT
ATCATTCATACTTTTAGCAAGTTTATGTACAGTTTGCAGAAGTTGTGTCT
CACAGGATCTGTGCTTTCTAAAGCCATGCTGTGATTCAATGAGAACTTTC
TCACTTTCCAAGTGGTTTAACGTTTCATTGAATTTACACACTCAATACCT
CCGGAGGAATTGCGCAGAATTCCTGAATGTCCCCACTGTTTCAGTGTACT
GATTACCCGGGGTATGGACGATTGAAAAACACCCGTGGGAAATATTGCGT
TGATATTATGATTACCCGGGGCACGGACGATTGAAAAACACCCTGTGGGA
AAATGTTgcgttgattttatttttcgtaAAAACCGGAAACTTAGTCCTAT
CTGGGAAAAACTCTAAGCGAGATTGTTATAGACCAGTTATATCAAAATTC
AAAGTGCGTCACAAATGCGTCACGCTGATCTTAAAAAAGTAATACACGTG
ACAAAAATTCTTAGTattactttttttcaaattgttgatTGTCTCCACTG
GCATATTCTGGATGGTATTGGTTACCCTGGTAATGAAAGCGTCATACTTC
TCTCGGCTGATGTTGAGAGCTTTGGCGTCGTCTCGTAATTTTACTCTGAC
CAGATGGAAAAAATTCTCAATGACGTCTAAATCGGGGGATCGAACCGAAT
CTTTTGAACCTCGTATTTAAACCTTTGCCATGCCTGCTTGCAGGGTGCAA
CGTTCTGCTTGGGACAGCcatccatcaaaaacatgcGGTCCCCTTTCTTT
GCTCCGCACTTTTACTATGCTTTCGGAAATTCTGTCTTGATgaattttgc
aaagtttttgcCGTTTATTTTCCAGTCGTGATGGTGACACATCACAACTC
CCTTATTGTAAGCGTTCCCTACGAAAAAACTCACCACCTTACCTCCGCTT
CCTTCTTTCCGTCCCTTGGTTGTAAACACTAACCCCTCGTCAGGTTGGCG
CCAGACCATCGATGAGACCGCGCGTGCTTCTCCAGCGGGGTTTGATTTGT
GGGCGAAACCGATTCCATCCAGATAAAATTTAACTTTGTGTCGCCAATAG
CTCAAGGGTTTTTCACATGCTTCCTTGCCCAAGCGACTCGTACCGTTTTG
TCGTTTCCTATCAGCAGTCCTTTTTTCCTCGATTGCAAATATCGATAGTT
GTTCTTTCGGAGACAGCGTTGAACGTCCCGCTTGTTTATACCCTCTTCCG
CCAAGTTTGATTCCTCCAATACTTTACCAGCCGTAAAAGCCACACTTTCA
GTACAAAGTTTCTTCAGTGACCGCAGAATGATTCTTTCCCTCCTTGCATC
TACCTTCTTTGGCCTACCAGGGTTTTTAGTACGGCGATCGACATTGTTGG
ACAGCTGGTCAAGTGGCTTCTTCGCGTGGCGATAGATGGTGCGCTCTAGA
ATCTTTTTGCCAAAGCGTTTTGTCAGTTCGTAGCAACTGACACCTTGCTC
TTGGTGCAATACGGCCAGCTTGATGGAATCACGTACTGACAGTTTGTTAT
CCTTTGGTTTCTTTGCAGATGTCTTCTTTAGCTTTGGTTTCACCATTGTT
GTTCcaatttattttatctttttatatttttctcttttactttcaactaa
aagaaaaataaatgaaaaagatgaaaatgatatacaaaaagtgcttataa
TTAATTTGTTTATTAAAAGAAATAATGTGACCCTATCCCTATTAATGCAA
TGTTCAGACTTTGACAACACAATCCAAACCGTAGAAGGCATACAGACCCT
ATGAATAATGCACGAGgccggtattcttaggttagtttcttataaaaaaa
ataacccCGGTTTTCACCGTGACAGTTTACCCAAGCTGTGGTGGCCCCCC
ATCCAATTTATAATAAGGTATGAAACAACCAAAACATAATTCAGACGTCA
CCAAGAAAGTTAAGGCAGTTAACGTTAAAACTTTCTCGGGCTGATACAGG
CCGGAAACCGACCCGCAAGCTGAAATCCCCGCCTAAATTTGCCCGACAAC
ACCCAGAAGATCCACCCCAAGTGTATTTCATAACAATAATCATATACTCA
TAGCgtgtaaaataaaacaaataaacaCACATgagtaaaattcaaaaata
ggtAGTGTAAATTTTC Coding sequence (CDS) from alignment at scaffold_204:94606..96871 >TCONS_00051771 ID=TCONS_00051771|Name=TCONS_00051771|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_204:94606..96871 (Clytia hemisphaerica)
TCAAGGGTTTTTCACATGCTTCCTTGCCCAAGCGACTCGTACCGTTTTGT
CGTTTCCTATCAGCAGTCCTTTTTTCCTCGATTGCAAATATCGATAGTTG
TTCTTTCGGAGACAGCGTTGAACGTCCCGCTTGTTTATACCCTCTTCCGC
CAAGTTTGATTCCTCCAATACTTTACCAGCCGTAAAAGCCACACTTTCAG
TACAAAGTTTCTTCAGTGACCGCAGAATGATTCTTTCCCTCCTTGCATCT
ACCTTCTTTGGCCTACCAGGGTTTTTAGTACGGCGATCGACATTGTTGGA
CAGCTGGTCAAGTGGCTTCTTCGCGTGGCGATAGATGGTGCGCTCTAGAA
TCTTTTTGCCAAAGCGTTTTGTCAGTTCGTAGCAACTGACACCTTGCTCT
TGGTGCAATACGGCCAGCTTGATGGAATCACGTACTGACAGTTTGTTATC
CTTTGGTTTCTTTGCAGATGTCTTCTTTAGCTTTGGTTTCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051771-exon-scaffold_204-1491911889:94606..96871 | TCONS_00051771-exon-scaffold_204-1491911889:94606..96871 | Clytia hemisphaerica | exon |
| TCONS_00051771-exon-scaffold_204-1510915933:94606..96871 | TCONS_00051771-exon-scaffold_204-1510915933:94606..96871 | Clytia hemisphaerica | exon |
| TCONS_00051771-exon-scaffold_204-1575043694:94606..96871 | TCONS_00051771-exon-scaffold_204-1575043694:94606..96871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_204 | supercontig | scaffold_204:94606..96871 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002492 | Transposase_Tc1-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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