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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051874 ID=TCONS_00051874|Name=TCONS_00051874|organism=Clytia hemisphaerica|type=transcript|length=1108bp
ATGGAAAAGATTCTCAAAACCCATATTATGACATATCTTGATCAAGAGAA
ATTACTATCTAGCAAACAACATGGCTTCATCAACCGCCGGTTAACTGTAA
CACAATTACTAAACTACCTAGATGCTTGCACCGAAGACATTGGAAACGGT
AAAGCCGTAGACGCAATATACTTTGACTTTGCAAAAGCATTCGACTCAGT
TCCTCATCAACGTCTCCTAATCAAACTGGAAGCATATGGGATAAAAAACA
AGTTGCTTGAATGGAACAAAGACTTCCTGAAGGATCGATCCCAGATTGTC
AAAGTAAACGGAGTTGAATCGGTGCAAAAAGCAGTGCTCAGTGGAATACC
TCAAGGTAGTGTCCTAGGGCCTACCCTTTTTGTTCTCTATATCAACGACA
GGGACGGATCCAGGAATTTTCATGGGATAGGCTTAATTTCAGTTCATGAT
TaccgatttccccgatttccccgatttttcttCATTACCCCGatattttc
cccgattttcttatttaaacaatttttatcTTGAATATATGAACGTTTAA
ACGACTATTTGGAAATGATAATGACtaagattttttttacaaaaaatgac
tAGTTTGAAATATGAAAGATACATGTTTTAGCATAGAAATTAAATGAATT
CAAGAGTCTAAAATATTTCCAGACCCCATTCTTCGTCTATCTTTGTCAAT
GGCACGTAAAACTTTTCCAAATAGTTGATTTCAGGAATCGTTTAAAACCC
ccttgaacttttttttttgtcaaaagagtAGCACAATAAAGACTTTTTGA
AAAGCCCATATATCATTATAAGAAAACTTATGGTTGTCAAAGATCATAAG
CAGATAAAGGTTTTCTAAGGGCttataaaatttttcgacaGCCAAAAGCA
AAAGATAACATGGCACGTTTTGTAGAATATTAtaagaaatttgattttgc
tTTCTGTTTCTTGTAATTTGTCTTCCATaagtgtcttctttttctttact
ttcttataaaaaacgagaCACCTGTACCTTATAGGAGCAAATTATATAAT
TGAATGAGAAGTTCTTTTGTTTGTTCGAACaagaatttccaaaatttact
cAAAAGCG Run BLAST on NCBI protein sequence of TCONS_00051874-protein >TCONS_00051874-protein ID=TCONS_00051874-protein|Name=TCONS_00051874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MEKILKTHIMTYLDQEKLLSSKQHGFINRRLTVTQLLNYLDACTEDIGNG
KAVDAIYFDFAKAFDSVPHQRLLIKLEAYGIKNKLLEWNKDFLKDRSQIV
KVNGVESVQKAVLSGIPQGSVLGPTLFVLYINDRDGSRNFHGIGLISVHD
YRFPRFPRFFFITPIFSPIFLFKQFLS Run BLAST on NCBI transcript from alignment at scaffold_205:4580..5687 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051874 ID=TCONS_00051874|Name=TCONS_00051874|organism=Clytia hemisphaerica|type=transcript|length=1108bp|location=Sequence derived from alignment at scaffold_205:4580..5687 (Clytia hemisphaerica)
CGCTTTTgagtaaattttggaaattcttGTTCGAACAAACAAAAGAACTT
CTCATTCAATTATATAATTTGCTCCTATAAGGTACAGGTGtctcgttttt
tataagaaagtaaagaaaaagaagacacttATGGAAGACAAATTACAAGA
AACAGAAagcaaaatcaaatttcttaTAATATTCTACAAAACGTGCCATG
TTATCTTTTGCTTTTGGCtgtcgaaaaattttataaGCCCTTAGAAAACC
TTTATCTGCTTATGATCTTTGACAACCATAAGTTTTCTTATAATGATATA
TGGGCTTTTCAAAAAGTCTTTATTGTGCTactcttttgacaaaaaaaaaa
gttcaaggGGGTTTTAAACGATTCCTGAAATCAACTATTTGGAAAAGTTT
TACGTGCCATTGACAAAGATAGACGAAGAATGGGGTCTGGAAATATTTTA
GACTCTTGAATTCATTTAATTTCTATGCTAAAACATGTATCTTTCATATT
TCAAACTagtcattttttgtaaaaaaaatcttaGTCATTATCATTTCCAA
ATAGTCGTTTAAACGTTCATATATTCAAgataaaaattgtttaaataaga
aaatcggggaaaatatCGGGGTAATGaagaaaaatcggggaaatcgggga
aatcggtAATCATGAACTGAAATTAAGCCTATCCCATGAAAATTCCTGGA
TCCGTCCCTGTCGTTGATATAGAGAACAAAAAGGGTAGGCCCTAGGACAC
TACCTTGAGGTATTCCACTGAGCACTGCTTTTTGCACCGATTCAACTCCG
TTTACTTTGACAATCTGGGATCGATCCTTCAGGAAGTCTTTGTTCCATTC
AAGCAACTTGTTTTTTATCCCATATGCTTCCAGTTTGATTAGGAGACGTT
GATGAGGAACTGAGTCGAATGCTTTTGCAAAGTCAAAGTATATTGCGTCT
ACGGCTTTACCGTTTCCAATGTCTTCGGTGCAAGCATCTAGGTAGTTTAG
TAATTGTGTTACAGTTAACCGGCGGTTGATGAAGCCATGTTGTTTGCTAG
ATAGTAATTTCTCTTGATCAAGATATGTCATAATATGGGTTTTGAGAATC
TTTTCCAT Coding sequence (CDS) from alignment at scaffold_205:4580..5687 >TCONS_00051874 ID=TCONS_00051874|Name=TCONS_00051874|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_205:4580..5687 (Clytia hemisphaerica)
TCAAgataaaaattgtttaaataagaaaatcggggaaaatatCGGGGTAA
TGaagaaaaatcggggaaatcggggaaatcggtAATCATGAACTGAAATT
AAGCCTATCCCATGAAAATTCCTGGATCCGTCCCTGTCGTTGATATAGAG
AACAAAAAGGGTAGGCCCTAGGACACTACCTTGAGGTATTCCACTGAGCA
CTGCTTTTTGCACCGATTCAACTCCGTTTACTTTGACAATCTGGGATCGA
TCCTTCAGGAAGTCTTTGTTCCATTCAAGCAACTTGTTTTTTATCCCATA
TGCTTCCAGTTTGATTAGGAGACGTTGATGAGGAACTGAGTCGAATGCTT
TTGCAAAGTCAAAGTATATTGCGTCTACGGCTTTACCGTTTCCAATGTCT
TCGGTGCAAGCATCTAGGTAGTTTAGTAATTGTGTTACAGTTAACCGGCG
GTTGATGAAGCCATGTTGTTTGCTAGATAGTAATTTCTCTTGATCAAGAT
ATGTCATAATATGGGTTTTGAGAATCTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051874-exon-scaffold_205-1491911889:4580..5687 | TCONS_00051874-exon-scaffold_205-1491911889:4580..5687 | Clytia hemisphaerica | exon |
| TCONS_00051874-exon-scaffold_205-1510915933:4580..5687 | TCONS_00051874-exon-scaffold_205-1510915933:4580..5687 | Clytia hemisphaerica | exon |
| TCONS_00051874-exon-scaffold_205-1575043694:4580..5687 | TCONS_00051874-exon-scaffold_205-1575043694:4580..5687 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:4580..5687 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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