TCONS_00051839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051839
Unique NameTCONS_00051839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051839 ID=TCONS_00051839|Name=TCONS_00051839|organism=Clytia hemisphaerica|type=transcript|length=1769bp
TTAAAGAGGTTTCTTAATGATAAATGTTCCTCTATTTAGGCGAGTAATAT
AGATTTGAAACACCGCAAAGTAAAGAAGGAActagtttttcagaattttc
tcaTATATATTTCTTTTCAGCTAATCGATATCCCAACTTTTCACATAAtt
gtaatattttgtttttcttccttttttcagtCTAGAATTATTGGCAGATg
gcttttctttctttcctgCTCCTTAATTTACTAGAGGGAAAATCGAGAAA
GTGTTTTTCTTGTATCATTTTAACATTTACAAAGTTCATGTTTCTGTCTT
GGTTTTAGGATACAGCGACCATCGTATTTTCAACTCGAAGAAGCTACTCC
AGTTTTCACTTGAGAAGGATAAACACCTGCAAACAAACCTTTTTTGATGT
GTTTTCATATGGCCACCTGATGCAATCGAATTTCATCCTACCAACTATCG
AATCTATCTAtagtaataaatataataacAGTCAATCGTCTTCGTTGAAC
ACCAAAAGTAAATTCTTTCAATCAAACATGGCGTCAGGAAGTAACGGTGG
CAGTTCGAATGAGTTATCAAACGTACCGCAAGTGATTGAACTCAATGTTG
GTGGACACTACTACACAACAACCCTCTCCACACTTTTATTTGAATCTGGC
TCTCTTTTGACAAGTATGTTTACTGGCAACATCCGAGTATCTAAAGACAG
TCGTGGTAGATATTTTATTGATCGCGACGGTGCTTTGTTTCGGTACGTAT
TGGATTATCTTCGCAACGACGGACTGACGTTACCTAAAAAGTTCGAAGAG
GCGGATCGGTTGTTAGTAGAAGCTGAGTATTTCAGATTGAAAGGACTCTG
TAAATTGTTGAAAAAGCCTACACGTAAAGACCCGAGAGGACCTACATCTC
GTACGAGTGGTTTTATCACGCTTTGCGTTCGTGGTACGTATGCTTTCGGC
CGTGACGGGATCGCTGATATTAAGTTTCGCAAACTTCAACGTATCTNTTG
CGTTCGTGGTACGTATGCTTTCGGCCGTGACGGGATCGCTGATATTAAGT
TCCGCAAACTTCAACGTATCTTAGTTTGTGGAAATGTCGGATTAAGTCGT
GAAGTGTTTTCAGACACACTAAACGAAACACGTGATCCCGATCGGAAAAC
AGATTGTTATTCAAGTCGTTTCTATCTTAAGCATCCTCACTTGGAAATGG
CCTTCGATAGACTCCAtgaatcaaattttaaaatggtCACGTCAGCTGCA
GGAGGGGCTGGTTATGACCCAGAATCCGAAGAAACCAAATGGAACCATTT
CACTAATTATGTTTTCTTCAGAGAATAATTGAACACGAAATACTTTTAAG
ACCCACAAAGGCTCTCAATAACCGAATCGCTATTTGAGTAGTACTTTTTG
TAAGATGAAGTCTATTGTGTTGGATTTTACCAGCAGTTGAATTCTACATC
TTAGGCAAACTATGCCTGTTACAGTGACTTTTGTTTAAGAGAAGACATtg
ttccttttttgaaaaagtagaTAGCGTACATTGAAACCCTTCTCCTTAAC
TTAATGATATACAAAAAGGAAATGTTTTTATCAGTTTCgaccaaaatttg
ttttattgtttagaaatattttgggcTTAATACTTGTAATGGTTGTTTCA
TTACTAacttatttttagaaattatgCTTAATTTTTATGTTGCAATAAGT
TTCAATGTTCAAGATACGTCTTCTTCTATTTTTATAGTTCTTTATCTTAC
TAACAAAGAACGGAGCCCT
Run BLAST on NCBI

protein sequence of TCONS_00051839-protein

>TCONS_00051839-protein ID=TCONS_00051839-protein|Name=TCONS_00051839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MQSNFILPTIESIYSNKYNNSQSSSLNTKSKFFQSNMASGSNGGSSNELS
NVPQVIELNVGGHYYTTTLSTLLFESGSLLTSMFTGNIRVSKDSRGRYFI
DRDGALFRYVLDYLRNDGLTLPKKFEEADRLLVEAEYFRLKGLCKLLKKP
TRKDPRGPTSRTSGFITLCVRGTYAFGRDGIADIKFRKLQRIXCVRGTYA
FGRDGIADIKFRKLQRILVCGNVGLSREVFSDTLNETRDPDRKTDCYSSR
FYLKHPHLEMAFDRLHESNFKMVTSAAGGAGYDPESEETKWNHFTNYVFF
RE
Run BLAST on NCBI

transcript from alignment at scaffold_205:45340..47848-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051839 ID=TCONS_00051839|Name=TCONS_00051839|organism=Clytia hemisphaerica|type=transcript|length=2509bp|location=Sequence derived from alignment at scaffold_205:45340..47848- (Clytia hemisphaerica)
TTAAAGAGGTTTCTTAATGATAAATGTTCCTCTATTTAGGCGAGTAATAT
AGATTTGAAACACCGCAAAGTAAAGAAGGAACTAGTTTTTCAGAATTTTC
TCATATATATTTCTTTTCAGCTAATCGATATCCCAACTTTTCACATAATT
GTAATATTTTGTTTTTCTTCCTTTTTTCAGTCTAGAATTATTGGCAGATG
GCTTTTCTTTCTTTCCTGCTCCTTAATTTACTAGAGGGAAAATCGAGAAA
GTGTTTTTCTTGTATCATTTTAACATTTACAAAGTTCATGTTTCTGTCTT
GGTTTTAGGATACAGCGACCATCGTATTTTCAACTCGAAGAAGCTACTCC
AGTTTTCACTTGAGAAGGATAAACACCTGCAAACAAACCTTTGTAAGTTA
ACAAATTTCTTTTGTTTGTGTATTTTAATTTTTAACCCTAAAAAAAAGAA
CAGCCCTTATCAACCAGAACAGAGGAAGATTTATTTTTATTTTTGTCACA
CTGCTGTTTTAAAAAATCTTTGGGTGAAAGAGAGAGGTTTTTAATTTGGA
AATATTAAGGAGCGAATATTAAAGTCACCTGGAGTAATGGGTGGAAAACA
GTGTGATATTTTTCACCTTTTTTGTAATATTTTTTTTCCGGAAAAAAAAA
TTACGAGAACGAGGAAAGATTCTGTGGTGGATATTTTCATGAAAGTATTA
CACAAAAAGTTTAGTAATTCAAATATTTTTTTTCATCACTACATTTCAAG
TAAATCTTGGTATCGTTGTTAGAGATTTCATCAAATATTTGACTACCAAT
TATTTTGCTCTTTTTTTATTTTTTTTTCCTTTTCTTTTTCATGAGAGAGA
TAATAATTCGAATTAGATGTGAAGAACAAAAAAATTTAACAGGGATTGAA
GCAAAAAAGGGGAGAATTTGTAAACAGGGATATGATATGAGGGGCTAGCT
GACCATTGTTTGAAAAATATTTTCTCGGTTATAGCAGACCAAACTGAAAA
GAAAAGAAAAGGGAAATATTGTGAGAATTCTTAGCCTGAAGAGTAAGTAC
ACTGTGGGTGAGTAAGGGGAAAAAACGAAAACAGAGGGAAAGTAAAAAAT
TTCCTTTTGTACATTTTTATATTTTGTTAAAGTTTGATGTGTTTTCATAT
GGCCACCTGATGCAATCGAATTTCATCCTACCAACTATCGAATCTATCTA
TAGTAATAAATATAATAACAGTCAATCGTCTTCGTTGAACACCAAAAGTA
AATTCTTTCAATCAAACATGGCGTCAGGAAGTAACGGTGGCAGTTCGAAT
GAGTTATCAAACGTACCGCAAGTGATTGAACTCAATGTTGGTGGACACTA
CTACACAACAACCCTCTCCACACTTTTATTTGAATCTGGCTCTCTTTTGA
CAAGTATGTTTACTGGCAACATCCGAGTATCTAAAGACAGTCGTGGTAGA
TATTTTATTGATCGCGACGGTGCTTTGTTTCGGTACGTATTGGATTATCT
TCGCAACGACGGACTGACGTTACCTAAAAAGTTCGAAGAGGCGGATCGGT
TGTTAGTAGAAGCTGAGTATTTCAGATTGAAAGGACTCTGTAAATTGTTG
AAAAAGCCTACACGTAAAGACCCGAGAGGACCTACATCTCGTACGAGTGG
TTTTATCACGCTTTGCGTTCGTGGTACGTATGCTTTCGGCCGTGACGGGA
TCGCTGATATTAAGTTTCGCAAACTTCAACGTATCTNTTGCGTTCGTGGT
ACGTATGCTTTCGGCCGTGACGGGATCGCTGATATTAAGTTCCGCAAACT
TCAACGTATCTTAGTTTGTGGAAATGTCGGATTAAGTCGTGAAGTGTTTT
CAGACACACTAAACGAAACACGTGATCCCGATCGGAAAACAGATTGTTAT
TCAAGTCGTTTCTATCTTAAGCATCCTCACTTGGAAATGGCCTTCGATAG
ACTCCATGAATCAAATTTTAAAATGGTCACGTCAGCTGCAGGAGGGGCTG
GTTATGACCCAGAATCCGAAGAAACCAAATGGAACCATTTCACTAATTAT
GTTTTCTTCAGAGAATAATTGAACACGAAATACTTTTAAGACCCACAAAG
GCTCTCAATAACCGAATCGCTATTTGAGTAGTACTTTTTGTAAGATGAAG
TCTATTGTGTTGGATTTTACCAGCAGTTGAATTCTACATCTTAGGCAAAC
TATGCCTGTTACAGTGACTTTTGTTTAAGAGAAGACATTGTTCCTTTTTT
GAAAAAGTAGATAGCGTACATTGAAACCCTTCTCCTTAACTTAATGATAT
ACAAAAAGGAAATGTTTTTATCAGTTTCGACCAAAATTTGTTTTATTGTT
TAGAAATATTTTGGGCTTAATACTTGTAATGGTTGTTTCATTACTAACTT
ATTTTTAGAAATTATGCTTAATTTTTATGTTGCAATAAGTTTCAATGTTC
AAGATACGTCTTCTTCTATTTTTATAGTTCTTTATCTTACTAACAAAGAA
CGGAGCCCT

Coding sequence (CDS) from alignment at scaffold_205:45340..47848-

>TCONS_00051839 ID=TCONS_00051839|Name=TCONS_00051839|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_205:45340..47848- (Clytia hemisphaerica)
ATGCAATCGAATTTCATCCTACCAACTATCGAATCTATCTATAGTAATAA
ATATAATAACAGTCAATCGTCTTCGTTGAACACCAAAAGTAAATTCTTTC
AATCAAACATGGCGTCAGGAAGTAACGGTGGCAGTTCGAATGAGTTATCA
AACGTACCGCAAGTGATTGAACTCAATGTTGGTGGACACTACTACACAAC
AACCCTCTCCACACTTTTATTTGAATCTGGCTCTCTTTTGACAAGTATGT
TTACTGGCAACATCCGAGTATCTAAAGACAGTCGTGGTAGATATTTTATT
GATCGCGACGGTGCTTTGTTTCGGTACGTATTGGATTATCTTCGCAACGA
CGGACTGACGTTACCTAAAAAGTTCGAAGAGGCGGATCGGTTGTTAGTAG
AAGCTGAGTATTTCAGATTGAAAGGACTCTGTAAATTGTTGAAAAAGCCT
ACACGTAAAGACCCGAGAGGACCTACATCTCGTACGAGTGGTTTTATCAC
GCTTTGCGTTCGTGGTACGTATGCTTTCGGCCGTGACGGGATCGCTGATA
TTAAGTTTCGCAAACTTCAACGTATCTNTTGCGTTCGTGGTACGTATGCT
TTCGGCCGTGACGGGATCGCTGATATTAAGTTCCGCAAACTTCAACGTAT
CTTAGTTTGTGGAAATGTCGGATTAAGTCGTGAAGTGTTTTCAGACACAC
TAAACGAAACACGTGATCCCGATCGGAAAACAGATTGTTATTCAAGTCGT
TTCTATCTTAAGCATCCTCACTTGGAAATGGCCTTCGATAGACTCCATGA
ATCAAATTTTAAAATGGTCACGTCAGCTGCAGGAGGGGCTGGTTATGACC
CAGAATCCGAAGAAACCAAATGGAACCATTTCACTAATTATGTTTTCTTC
AGAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032813XLOC_032813Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051839-proteinTCONS_00051839-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051839-exon-scaffold_205-1575043694:47457..47848TCONS_00051839-exon-scaffold_205-1575043694:47457..47848Clytia hemisphaericaexon
TCONS_00051839-exon-scaffold_205-1575043694:45340..46716TCONS_00051839-exon-scaffold_205-1575043694:45340..46716Clytia hemisphaericaexon
TCONS_00051839-exon-scaffold_205-1510915933:47457..47848TCONS_00051839-exon-scaffold_205-1510915933:47457..47848Clytia hemisphaericaexon
TCONS_00051839-exon-scaffold_205-1510915933:45340..46716TCONS_00051839-exon-scaffold_205-1510915933:45340..46716Clytia hemisphaericaexon
TCONS_00051839-exon-scaffold_205-1491911889:47457..47848TCONS_00051839-exon-scaffold_205-1491911889:47457..47848Clytia hemisphaericaexon
TCONS_00051839-exon-scaffold_205-1491911889:45340..46716TCONS_00051839-exon-scaffold_205-1491911889:45340..46716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:45340..47848 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.825756	0.259392	0.108225	0	1.55965	0.961526	1.55012	2.58955	4.30601	3.02274	0.786407	3.24728	1.12267	0	0.719493	0.933161	0.803658	1.65631	0.733142	1.38324	1.34083	1.25085	1.17396	1.1145	0.643197	0.717846	1.39053	1.32714	0.195899	0.219277
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051260 protein homooligomerization
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00051839 vs. Swiss-Prot (Human)
Match: KCTD8 (BTB/POZ domain-containing protein KCTD8 OS=Homo sapiens GN=KCTD8 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 7.214e-54
Identity = 119/279 (42.65%), Postives = 156/279 (55.91%), Query Frame = 3 
Query:  576 PQVIELNVGGHYYTTTLSTLLFESGSLLTSMFT-----GNIR----VSKDSRGRYFIDRDGALFRYVLDYLRNDGLTLPKKFEEADRLLVEAEYFRLKGLCK-LLKKPTRKDPRGPTSRTSGFITLCVRGTYAFGRDGIADIKFRKLQRIXCV------------------RGTYAFGRDGIADIKFRKLQRILVCGNVGLSREVFSDTLNETRDPDRKTDCYSSRFYLKHPHLEMAFDRLHESNFKMVT-SAAGGAGYDPESEETK-WNHFTNYVFFR 1322
            P+V+ELNVGG  Y T  STLL    S L SMF+     G  R    + +DSR R+FIDRDG LFRYVLDYLR+  L LP+ F E +RLL EAEYF+L  L K L  K T+++        S       +G+        A                               RG+Y   RD  AD KFR++ RI+VCG + L++EVF DTLNE+RDPDR+ + Y+SRFYLK  +LE AFDRL E+ F MV  +++G A +  +  + K W+ +T Y+FFR
Sbjct:   43 PEVVELNVGGQVYVTKHSTLLSVPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLALPEHFPEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQGSSDALLLRGAAAAVPSGPGAHGGGGGGGAQDKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGRIALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRLSEAGFHMVACNSSGTAAFVNQYRDDKIWSSYTEYIFFR 321
The following BLAST results are available for this feature:
BLAST of TCONS_00051839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCTD87.214e-5442.65BTB/POZ domain-containing protein KCTD8 OS=Homo sa... [more]
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