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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051843 ID=TCONS_00051843|Name=TCONS_00051843|organism=Clytia hemisphaerica|type=transcript|length=1965bp GTGACCAATATACATCGAAAATTTATTGGCTGCTCACTAATTATTTTACC TTATCCTAATTTTGGATATGCGAGACAACTAAAGGTCGACCTCACTCAAC CAGTCAAGAGAAATAGTACTTTAAGCAAGTGGTTGGAATAACGAAGAACA GACgaagaaattcatcaaaatgaaGATCTTACTTTTAGCCGTTTTTACGG TCCTTTGCATTCATCAAGTAAATGCAAacgaaaaattgcgaaaaaggaaa gaaattttcgagAAATTCAAAGGTAAAGCATTAGGTTCGAATGAAAAAGC TGTCATTTTTAACCAAACATTCATGAAGATCAACAAAAGGGGTGGCAAAA TGACTCTTGTTCGCAAAGCCAAAAGTCTTCAAGTTCAAGTGAAGTCGATC GTTGAGAAATACGCAAACGAGACAGTGAGAAGCAACGTTATCCTTAAAGA TTTGGATTGTACTGTAAAAAAAGATGCAGAAGAAGAATCTAAGTACGGCA TCAATGCTACTGTTTTGTCCCTTGAATGTAATTTCCCAAACAGTGCAAAC GCTGCATTGGAGTTCTACTTGTTCAAAGCTAGTGGTACAATCGATGGTGA GGACGATAACCAATACGAAATTAAAGAAGGTGGTGTCAAAATGAATATCC AAATCTCAAACTGGCCGAATGAAGCTGAGATTCTTGATGTGACATTTGGA ATGAAATGTGGAATTGATGCATTTAAAGGAAGAGTCCCCGATAAATTGAA AAACAGGATCACTAGACGTAGACCAGGTGCACCCGCTCGCAGAGCAGCTC AAGCTTTTAGTGTTTGCCCTGAAGCGCGTGGAACCTTTGCCGCTAATtac aaagatggaggcaaTGACAAAGACATGCCTGAAGACTACCCTAAAGCAAA TGATGAACTCAAGGATTCGGAAGCTGAAATCACACTTCGTTTTTCTGGGC GGGATGTCGTGTACGATCCTACAATGGAGGTCGGTGATGATGTCATGGAG GAAAATGCTAACAGTGCAATGTCATTCGTTCCTAACATGTTACTCATGGT CGCTGTTTTTATCGTTGGgcaaatgaaattattttaaaaaagtttttttt gttgcttATTTCTAAGGGTTTACTAATCCCGTATACCTGATTTTCACAAG AGAAGATTCATCTTTTGAAGCACGGTTTTCGAAGtagtttttctcttttt gatcATAGATAGGCGGGTCATAAATAATTCGAGGACCTACCTTGGAAATA CAgaatatcaaaatataaaaatataagatTTAAAAATGTCATTAGTTGGC ATAACTCGTTGGCCAGCCTCCAAAATCGCTCATACACTGAGTGTACATTG TAAATATTATATACAGTAAAATATTTAGGATCCGTAAATTGTAAATAAAT TGTTTTCCTCAAATTATTTTAAGCCATTCCCATTATTTTCCTCATATTGG ATGATTGGATGGCTGTACACTTATTCGCACTACACTAAATTTCATTAGGA AATAATCTTTTCTTTATTTATCAAATTCACTGCACTGGCACTAGGCTTCG GAGAGGAATAATAGCTTTCCAAGAGGATATTTCCAGAGCCTCTTTTCTAT CGTTTTAGAAAAGTTCTTATGTGTGTACTTTTTTGCAATTTGCTATTGAT ATTGTATAACagtgataaaaaattttcaacttttatttagtctacacaat agacatcTCCAGGCTAGGCCTTTCTCttagagtaggagttttacactcga aacgaaggaagatgtGACGTACGAggtcaaaattgaaatcacTTTGCTGA TTTCAGAAAGGTTTTTTCACAAGTACTCACTTAAACATTTGTAAAatcct ttcttttctttatattttaatTGCAAAGATGGTTATCACACACCAAAAGT CAAGCCAAAAGTCATGtctctttttataaaaaaacagccaTGTGCCCTTC GTCTCGATCTCTCAA Run BLAST on NCBI protein sequence of TCONS_00051843-protein >TCONS_00051843-protein ID=TCONS_00051843-protein|Name=TCONS_00051843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MKILLLAVFTVLCIHQVNANEKLRKRKEIFEKFKGKALGSNEKAVIFNQT FMKINKRGGKMTLVRKAKSLQVQVKSIVEKYANETVRSNVILKDLDCTVK KDAEEESKYGINATVLSLECNFPNSANAALEFYLFKASGTIDGEDDNQYE IKEGGVKMNIQISNWPNEAEILDVTFGMKCGIDAFKGRVPDKLKNRITRR RPGAPARRAAQAFSVCPEARGTFAANYKDGGNDKDMPEDYPKANDELKDS EAEITLRFSGRDVVYDPTMEVGDDVMEENANSAMSFVPNMLLMVAVFIVG QMKLF Run BLAST on NCBI transcript from alignment at scaffold_205:65976..69192- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051843 ID=TCONS_00051843|Name=TCONS_00051843|organism=Clytia hemisphaerica|type=transcript|length=3217bp|location=Sequence derived from alignment at scaffold_205:65976..69192- (Clytia hemisphaerica) GTGACCAATATACATCGAAAATTTATTGGCTGCTCACTAATTATTTTACC
TTATCCTAATTTTGGATATGCGAGACAACTAAAGGTCGACCTCACTCAAC
CAGTCAAGAGAAATAGTACTTTGCACGGAAAACTTTGAATTGATGTGATT
AAAAATGTATCGTATGATATTATACGTTTACAGGCAAAAACACCCCTTTT
CACTGATTACTCCTTTATTGATTGATTTATTTATGAAGAATAGTACTGCG
ATTTCCTCATTCATATCTCATCTGGCAGGTGGTTCTATTCTTTATTCTAT
CATTAATGAATGTTTCCTATCGAATTAAGTTTGAATTATTCATAGAGAAG
AACCTCTTCGGCTAATCTCAAACGTGAATGAACTCTCGCATTGATGTGGA
ACATTTCTATTCGTTAAATTTTAATAGTCCTATCAAAAGTAATATATATT
TTATCCCCTTTTTGCTATGATTGTGAAAGAACCAAAAAAATCATCAATTT
TGTTCTTTCTTTTTCGTCACAGAAGCAAGTGGTTGGAATAACGAAGAACA
GACGAAGAAATTCATCAAAATGAAGATCTTACTTTTAGCCGTTTTTACGG
TCCTTTGCATTCATCAAGTAAATGCAAACGAAAAATTGCGAAAAAGGAAA
GAAATTTTCGAGAAATTCAAAGGTAAAGCATTAGGTTCGAATGAAAAAGC
TGTCATTTTTAACCAAACATTCATGAAGATCAACAAAAGGGGTGGCAAAA
TGACTCTTGTTCGCAAAGCCAAAAGTCTTCAAGTTCAAGTGAAGTCGATC
GTTGAGAAATACGCAAACGAGACAGTGGTAAGTAAATTTGATTTTTCTCT
TAACACGTTCGGTGCCGACTACGATTATGATTCAAGCGAGGTACTTGAAA
AGGGCCCTGAAAAGGGCCCTGAAAAGGCCAAAACTTTTTATACGAGAGCT
TTTTTACTGTAAATTAATGGTTGTTATTTATTGCGTCAACTTGTGAATAA
TTCAAAGGTTTGAAGCAACGCTCAGAAAGCCCAAGAGCCCCTGAAGAGTC
AAACCTTCCATTCCACCTGGTCAATTTACGATTTCTAAAGTGGTGTATTT
TGCAATCAAAAGGCAGTGAGTTTAACTGGGATTTTTAATGCAGGGGTTAG
TCTTTTAGTTTACTTGTTCAATTCCTTTTTATCTAGAGAAGCAACGTTAT
CCTTAAAGATTTGGATTGTACTGTAAAAAAAGATGCAGAAGAAGAATCTA
AGTACGGCATCAATGCTACTGTTTTGTCCCTTGAATGTAATTTCCCAAAC
AGTGCAAACGCTGCATTGGAGTTCTACTTGTTCAAAGCTAGTGGTACAAT
CGATGGTGAGGACGATAACCAATACGAAATTAAAGAAGGTGGTGTCAAAA
TGAATATCCAAATGTAAGCCCCTTTAATCTTTTGTTGTTTTATACGCTCC
TAGAGATCCTCAAATTTCTCAAAACACTATTGTCTTGCTTCATAAAGCTA
AACTTTAAATTAGACGTCTTTTCATTAGAAGATTGGAACTGGCAGAGTTG
TTTACTTTGCTGTTTATGCAATTATATTCTACCTTAGATTTCCTAATGTG
GGTCACTTTTGATTTACTTGACGCCTTTCTCAATTTCCGATGGAAAAGCA
TACATGATACAACAGTTTGTGAATCTAACATTATGTTAAACTCAGGCTGA
ATGCATTTATTCTGACAAATTATTTACCCTTAATAGCTCAAACTGGCCGA
ATGAAGCTGAGATTCTTGATGTGACATTTGGAATGAAATGTGGAATTGAT
GCATTTAAAGGAAGAGTCCCCGATAAATTGAAAAACAGGATCACTAGACG
TAGACCAGGTGCACCCGCTCGCAGAGCAGCTCAAGCTTTTAGTGTTTGCC
CTGAAGCGCGTGGAACCTTTGCCGCTAATGTAAGTTATTATTTAAAAAAC
AAACATATATTTCTAGGTTGGCATTACTTATTAATTATTTAAATTTGCTG
AAAGTCTTCAGAATTTCTTCTTTTGATCTTCAGAAATGAGATATATCTCG
AGCAATATTTTCAGTTTGTAATAAAGAACTTTTTTCTTTATATCAATAGT
ACAAAGATGGAGGCAATGACAAAGACATGCCTGAAGACTACCCTAAAGCA
AATGATGAACTCAAGGATTCGGAAGCTGAAATCACACTTCGTTTTTCTGG
GCGGGATGTCGTGTACGATCCTACAATGGAGGTCGGTGATGATGTCATGG
AGGAAAATGCTAACAGTGCAATGTCATTCGTTCCTAACATGTTACTCATG
GTCGCTGTTTTTATCGTTGGGCAAATGAAATTATTTTAAAAAAGTTTTTT
TTGTTGCTTATTTCTAAGGGTTTACTAATCCCGTATACCTGATTTTCACA
AGAGAAGATTCATCTTTTGAAGCACGGTTTTCGAAGTAGTTTTTCTCTTT
TTGATCATAGATAGGCGGGTCATAAATAATTCGAGGACCTACCTTGGAAA
TACAGAATATCAAAATATAAAAATATAAGATTTAAAAATGTCATTAGTTG
GCATAACTCGTTGGCCAGCCTCCAAAATCGCTCATACACTGAGTGTACAT
TGTAAATATTATATACAGTAAAATATTTAGGATCCGTAAATTGTAAATAA
ATTGTTTTCCTCAAATTATTTTAAGCCATTCCCATTATTTTCCTCATATT
GGATGATTGGATGGCTGTACACTTATTCGCACTACACTAAATTTCATTAG
GAAATAATCTTTTCTTTATTTATCAAATTCACTGCACTGGCACTAGGCTT
CGGAGAGGAATAATAGCTTTCCAAGAGGATATTTCCAGAGCCTCTTTTCT
ATCGTTTTAGAAAAGTTCTTATGTGTGTACTTTTTTGCAATTTGCTATTG
ATATTGTATAACAGTGATAAAAAATTTTCAACTTTTATTTAGTCTACACA
ATAGACATCTCCAGGCTAGGCCTTTCTCTTAGAGTAGGAGTTTTACACTC
GAAACGAAGGAAGATGTGACGTACGAGGTCAAAATTGAAATCACTTTGCT
GATTTCAGAAAGGTTTTTTCACAAGTACTCACTTAAACATTTGTAAAATC
CTTTCTTTTCTTTATATTTTAATTGCAAAGATGGTTATCACACACCAAAA
GTCAAGCCAAAAGTCATGTCTCTTTTTATAAAAAAACAGCCATGTGCCCT
TCGTCTCGATCTCTCAA Coding sequence (CDS) from alignment at scaffold_205:65976..69192- >TCONS_00051843 ID=TCONS_00051843|Name=TCONS_00051843|organism=Clytia hemisphaerica|type=CDS|length=3672bp|location=Sequence derived from alignment at scaffold_205:65976..69192- (Clytia hemisphaerica) TACAAAGATGGAGGCAATGACAAAGACATGCCTGAAGACTACCCTAAAGC AAATGATGAACTCAAGGATTCGGAAGCTGAAATCACACTTCGTTTTTCTG GGCGGGATGTCGTGTACGATCCTACAATGGAGGTCGGTGATGATGTCATG GAGGAAAATGCTAACAGTGCAATGTCATTCGTTCCTAACATGTTACTCAT GGTCGCTGTTTTTATCGTTGGGCAAATGAAATTATTTTAACTCAAACTGG CCGAATGAAGCTGAGATTCTTGATGTGACATTTGGAATGAAATGTGGAAT TGATGCATTTAAAGGAAGAGTCCCCGATAAATTGAAAAACAGGATCACTA GACGTAGACCAGGTGCACCCGCTCGCAGAGCAGCTCAAGCTTTTAGTGTT TGCCCTGAAGCGCGTGGAACCTTTGCCGCTAATAGAAGCAACGTTATCCT TAAAGATTTGGATTGTACTGTAAAAAAAGATGCAGAAGAAGAATCTAAGT ACGGCATCAATGCTACTGTTTTGTCCCTTGAATGTAATTTCCCAAACAGT GCAAACGCTGCATTGGAGTTCTACTTGTTCAAAGCTAGTGGTACAATCGA TGGTGAGGACGATAACCAATACGAAATTAAAGAAGGTGGTGTCAAAATGA ATATCCAAATATGAAGATCTTACTTTTAGCCGTTTTTACGGTCCTTTGCA TTCATCAAGTAAATGCAAACGAAAAATTGCGAAAAAGGAAAGAAATTTTC GAGAAATTCAAAGGTAAAGCATTAGGTTCGAATGAAAAAGCTGTCATTTT TAACCAAACATTCATGAAGATCAACAAAAGGGGTGGCAAAATGACTCTTG TTCGCAAAGCCAAAAGTCTTCAAGTTCAAGTGAAGTCGATCGTTGAGAAA TACGCAAACGAGACAGTGTACAAAGATGGAGGCAATGACAAAGACATGCC TGAAGACTACCCTAAAGCAAATGATGAACTCAAGGATTCGGAAGCTGAAA TCACACTTCGTTTTTCTGGGCGGGATGTCGTGTACGATCCTACAATGGAG GTCGGTGATGATGTCATGGAGGAAAATGCTAACAGTGCAATGTCATTCGT TCCTAACATGTTACTCATGGTCGCTGTTTTTATCGTTGGGCAAATGAAAT TATTTTAACTCAAACTGGCCGAATGAAGCTGAGATTCTTGATGTGACATT TGGAATGAAATGTGGAATTGATGCATTTAAAGGAAGAGTCCCCGATAAAT TGAAAAACAGGATCACTAGACGTAGACCAGGTGCACCCGCTCGCAGAGCA GCTCAAGCTTTTAGTGTTTGCCCTGAAGCGCGTGGAACCTTTGCCGCTAA TAGAAGCAACGTTATCCTTAAAGATTTGGATTGTACTGTAAAAAAAGATG CAGAAGAAGAATCTAAGTACGGCATCAATGCTACTGTTTTGTCCCTTGAA TGTAATTTCCCAAACAGTGCAAACGCTGCATTGGAGTTCTACTTGTTCAA AGCTAGTGGTACAATCGATGGTGAGGACGATAACCAATACGAAATTAAAG AAGGTGGTGTCAAAATGAATATCCAAATATGAAGATCTTACTTTTAGCCG TTTTTACGGTCCTTTGCATTCATCAAGTAAATGCAAACGAAAAATTGCGA AAAAGGAAAGAAATTTTCGAGAAATTCAAAGGTAAAGCATTAGGTTCGAA TGAAAAAGCTGTCATTTTTAACCAAACATTCATGAAGATCAACAAAAGGG GTGGCAAAATGACTCTTGTTCGCAAAGCCAAAAGTCTTCAAGTTCAAGTG AAGTCGATCGTTGAGAAATACGCAAACGAGACAGTGTACAAAGATGGAGG CAATGACAAAGACATGCCTGAAGACTACCCTAAAGCAAATGATGAACTCA AGGATTCGGAAGCTGAAATCACACTTCGTTTTTCTGGGCGGGATGTCGTG TACGATCCTACAATGGAGGTCGGTGATGATGTCATGGAGGAAAATGCTAA CAGTGCAATGTCATTCGTTCCTAACATGTTACTCATGGTCGCTGTTTTTA TCGTTGGGCAAATGAAATTATTTTAACTCAAACTGGCCGAATGAAGCTGA GATTCTTGATGTGACATTTGGAATGAAATGTGGAATTGATGCATTTAAAG GAAGAGTCCCCGATAAATTGAAAAACAGGATCACTAGACGTAGACCAGGT GCACCCGCTCGCAGAGCAGCTCAAGCTTTTAGTGTTTGCCCTGAAGCGCG TGGAACCTTTGCCGCTAATAGAAGCAACGTTATCCTTAAAGATTTGGATT GTACTGTAAAAAAAGATGCAGAAGAAGAATCTAAGTACGGCATCAATGCT ACTGTTTTGTCCCTTGAATGTAATTTCCCAAACAGTGCAAACGCTGCATT GGAGTTCTACTTGTTCAAAGCTAGTGGTACAATCGATGGTGAGGACGATA ACCAATACGAAATTAAAGAAGGTGGTGTCAAAATGAATATCCAAATATGA AGATCTTACTTTTAGCCGTTTTTACGGTCCTTTGCATTCATCAAGTAAAT GCAAACGAAAAATTGCGAAAAAGGAAAGAAATTTTCGAGAAATTCAAAGG TAAAGCATTAGGTTCGAATGAAAAAGCTGTCATTTTTAACCAAACATTCA TGAAGATCAACAAAAGGGGTGGCAAAATGACTCTTGTTCGCAAAGCCAAA AGTCTTCAAGTTCAAGTGAAGTCGATCGTTGAGAAATACGCAAACGAGAC AGTGTACAAAGATGGAGGCAATGACAAAGACATGCCTGAAGACTACCCTA AAGCAAATGATGAACTCAAGGATTCGGAAGCTGAAATCACACTTCGTTTT TCTGGGCGGGATGTCGTGTACGATCCTACAATGGAGGTCGGTGATGATGT CATGGAGGAAAATGCTAACAGTGCAATGTCATTCGTTCCTAACATGTTAC TCATGGTCGCTGTTTTTATCGTTGGGCAAATGAAATTATTTTAACTCAAA CTGGCCGAATGAAGCTGAGATTCTTGATGTGACATTTGGAATGAAATGTG GAATTGATGCATTTAAAGGAAGAGTCCCCGATAAATTGAAAAACAGGATC ACTAGACGTAGACCAGGTGCACCCGCTCGCAGAGCAGCTCAAGCTTTTAG TGTTTGCCCTGAAGCGCGTGGAACCTTTGCCGCTAATAGAAGCAACGTTA TCCTTAAAGATTTGGATTGTACTGTAAAAAAAGATGCAGAAGAAGAATCT AAGTACGGCATCAATGCTACTGTTTTGTCCCTTGAATGTAATTTCCCAAA CAGTGCAAACGCTGCATTGGAGTTCTACTTGTTCAAAGCTAGTGGTACAA TCGATGGTGAGGACGATAACCAATACGAAATTAAAGAAGGTGGTGTCAAA ATGAATATCCAAATATGAAGATCTTACTTTTAGCCGTTTTTACGGTCCTT TGCATTCATCAAGTAAATGCAAACGAAAAATTGCGAAAAAGGAAAGAAAT TTTCGAGAAATTCAAAGGTAAAGCATTAGGTTCGAATGAAAAAGCTGTCA TTTTTAACCAAACATTCATGAAGATCAACAAAAGGGGTGGCAAAATGACT CTTGTTCGCAAAGCCAAAAGTCTTCAAGTTCAAGTGAAGTCGATCGTTGA GAAATACGCAAACGAGACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051843-exon-scaffold_205-1575043694:69071..69192 | TCONS_00051843-exon-scaffold_205-1575043694:69071..69192 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1575043694:68366..68670 | TCONS_00051843-exon-scaffold_205-1575043694:68366..68670 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1575043694:67780..68006 | TCONS_00051843-exon-scaffold_205-1575043694:67780..68006 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1575043694:67264..67456 | TCONS_00051843-exon-scaffold_205-1575043694:67264..67456 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1575043694:65976..67093 | TCONS_00051843-exon-scaffold_205-1575043694:65976..67093 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1510915933:69071..69192 | TCONS_00051843-exon-scaffold_205-1510915933:69071..69192 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1510915933:68366..68670 | TCONS_00051843-exon-scaffold_205-1510915933:68366..68670 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1510915933:67780..68006 | TCONS_00051843-exon-scaffold_205-1510915933:67780..68006 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1510915933:67264..67456 | TCONS_00051843-exon-scaffold_205-1510915933:67264..67456 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1510915933:65976..67093 | TCONS_00051843-exon-scaffold_205-1510915933:65976..67093 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1491911889:69071..69192 | TCONS_00051843-exon-scaffold_205-1491911889:69071..69192 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1491911889:68366..68670 | TCONS_00051843-exon-scaffold_205-1491911889:68366..68670 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1491911889:67780..68006 | TCONS_00051843-exon-scaffold_205-1491911889:67780..68006 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1491911889:67264..67456 | TCONS_00051843-exon-scaffold_205-1491911889:67264..67456 | Clytia hemisphaerica | exon |
TCONS_00051843-exon-scaffold_205-1491911889:65976..67093 | TCONS_00051843-exon-scaffold_205-1491911889:65976..67093 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_205 | supercontig | scaffold_205:65976..69192 - |
Blast
The following BLAST results are available for this feature:
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