TCONS_00051856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051856
Unique NameTCONS_00051856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1133

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051856 ID=TCONS_00051856|Name=TCONS_00051856|organism=Clytia hemisphaerica|type=transcript|length=1133bp
AGAAAATTACCTTGATTCTCCATCAGGTTAGTACCATCATTCAAGGAGAA
AAGATTCTAGTAAAAAACCTTTTCTTCACCTCCTCTTGTAGATCCATTTC
AACCGCCGCAAGGGTTTCCACCACAGTTCGGAGGGCCACTGCGTGGTAGC
GACAGTGAATATGATAGCGAAGGTGAATTAAGAAGACATCGGAGAAGAGA
CTCCTCTGGTAGACATGGTAGCAGTAGGAGACATCGAGACCGAAGTGATC
GAGGTGAAAGAGACCGTGATAGGAGTATGCGTGATAGAGATCGTGATCGT
CCACGAACAGAACATAGGGATCGTTCTTCAAGGCGTAGGCATGAATCACG
TTCAACTTCAGATAGGAAAAAACATTCGAGATCTGGGCGAGAAGAGGAGG
AAGGGGGTGAACGTAAATCTTCCCGTAGAAGTCGCACCAAAACTGAAATC
AAACAGGAACCAATAGATAATACAGACAATGGAGTAGTAAATGATAGCCT
AGCACCTGATGGAGCGGTCAACGTGGAAGCTGGTGGAGGGGAAGCATAGA
TGCTAGGTTatatttgtgatttttgttttggtggTATTATTCTTGCAGTT
TGTCTGGTAGTCGGAAGATATGAAGCGGGGTAGATCGTTGCTTAGCTACC
GTTTCATGTCTCGATCAGGTTTGAAGATTTCAAACCGTTTTTATCAAAAG
TACTCGAAAAGAACattatatgaaaatatttttttcaggaaaaatgaCAC
TTGAAATTGACttaaattttatcttatttGCGCGCTAAAAGAACTAAAAA
CAGTCAAATCCAACACAACAACGAGTCCGTTGGAAATGACGGATAGTACT
TTTATTAGATATACATATTATATTTGCACCTTTTAATATTGTGTATTGTG
CTGATCATGTAAAAAGAAATGGAGAAGCAGATTATCTCGCGAATGGTAAT
TTTTAAAAGTCGAATTTTTCAATGATTAATGAATCAATACCCAAAACTCT
CTTTTCGAATCTCAAGTTTTAAAATCTTGGATTCGGTTTTGAGCTTCATG
CAGGGCAGGAATTCCTCAGGAATTCAGAGTTTTATGGattaaaatgaagt
tttttcaaaatctctGGATTTAATTCAATTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_205:89725..92986-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051856 ID=TCONS_00051856|Name=TCONS_00051856|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at scaffold_205:89725..92986- (Clytia hemisphaerica)
AGAAAATTACCTTGATTCTCCATCAGGTTAGTACCATCATTCAAGGAGAA
AAGATTCTAGTAAAAAACCTTTTCTTCACCTCCTCTTGTAGATCCATTTC
AACCGCCGCAAGGGTTTCCACCACAGTTCGGAGGGCCACTGCGTGGTAGC
GACAGTGAATATGATAGCGAAGGTGAATTAAGAAGACATCGGAGAAGAGA
CTCCTCTGGTAGACATGGTAGCAGGTGATTGATCTCTTTTATTCTAAGAT
TATACACAGCTGCCTTGAGAGATTGCTCCTCTATGGAACGCTGTAGCTGC
CTAATGTGATAAAATATTCGATTATGCGATAAAATATTCGATAAAAAATT
TGATGCGATAAATCATTCGATAAATTATTCGATGCGATAAAATATTGGAT
GCCATAAATCATTCGATAAAAAATTCGATGCGATAAACCATTCGATAAAT
TATTCGATGAATTATCCGATCGGCCCTTAGTAAGGGCCTTACCCGATATT
TATACTTTTGGTGGAAATGGCGCATCTTTCAAAACGCAAAACGCAACCCC
ACGTGTGTGTGTGTGGGGGGTGGGATATGAAAACGTCGACCATTTTGCTG
GCAGTTGGTGTTCAACTTTTAAGTAATTAAGTAAGTAATTAATGGATTAA
ATTACACTACGTCAGTGACTTTAGTGTGTACCAGTTCTTTTTAATTTTTA
TGGGAAAGTCAAACCAAAGGTATCTCTTGCTTTATCAATTACATTACAGT
TGACAGTAAAGGCCAAAAAGCGATAGAAAGGGGTAATCTGATGGGATTTT
GGTTCAGCAAAATCGAAATCTAGAAGGATTTTTTTCTTTGGTATTCTAAC
TATTTTATTCTATCAGGATCATCAATAGCGTAAGGGGTCGAGGATGGAAA
AAAAGTTTCATAAACTTTGAGGGAGGACATCGCAATTTGACTTCGAACTA
AACTAAACGGAACATAATTTACATAAAACTAAAATCTGTTTAATAATTGC
CCTCAGAATTGATGATTGCTATACTCTTTTGTGCTTAATTGTCTAAAATC
ATATACTATGAATTTTCTCCCAGAGTACCAACCCCGCTGCTTATTCCACC
AATCCCTAAAATTAACTTCAAAAGAGTATTGGATTTATTTGCGATAATTC
TAAACTCAGTAAGATAGATCGATAAATCTGTTAGTTCTATTTTTTTCTGG
ACACACTGTTTTTTTTTTGCCATGATCTGCCCTAATCAGCAGCACCCCCG
GAAAATCTTCTTTTCGATCGATGATTTCACCCTTCCGGAGCGCGGTTTCC
ACCAAAAGTATAAATATCGGGTAAGGGCTGATCGGATAATTCAACGAATA
ATTTATCGTATGGTTTATCGCATCGAATTTTTTATCGAATGATTTATCGC
ATCGAATTTTTTATCGAATAATTTATCGCATAAGGCAGCTACGGTGTTCC
ATACTCCTCGTTATAATTGGGTATCAATTTACTTTGAAGTAAATGTAAAA
GAGATGTCCAAGCAATCGCACCACTCTTTTTGATACTTTGAAGTATCTGT
GTTTGGTGGGCTTTTCAACTTTAGCAAGCTCGGTCTGTACTCTGGCTGCG
GTCAATATTTTTCCGTGTCGACCTTCAAAACNGCTTTTCAATTTTAGCAA
GCTCGGTCTGTACTCTGGCTGCGGTCAATATTTTTCCGTGTTGACCTTCA
AAACAGTTACTATTGTATAAATATCGGACATTTCTGACGTTGCTGAATGT
GAAATCTCTTTGTTGGCTACGAACCAGACTGTCTAAATGTCGTGTAAAAA
TTAACAACTTTTAATTTCTGTTTTTTTCTGTTCTTGCTTCCATCCAGTAT
ATTATCAGACTAGTACCATTGTTTTATTTAGTAGGAGACATCGAGACCGA
AGTGATCGAGGTGAAAGAGACCGTGATAGGAGTATGCGTGATAGAGATCG
TGATCGTCCACGAACAGAACATAGGGTAAGAACATGTTTTTCTACAGCTC
TGGAGTTAAGAACTACATGTTTTTTGAATTATTGAGCAACTTTGAAAATA
TAGATATTCTTAGAAACATTGTATCGGTATGCCTAGGAACTGGGATATGA
CACGGATGTTTTTATCATTGTTTTAATATATATTCTTAGGATCGTTCTTC
AAGGCGTAGGCATGAATCACGTTCAACTTCAGATAGGTAGGTCAATATTT
GATTAAATCTTTATTATTTGAGATCAAAAGGAAATAAAACTACCTTTACT
CAAACCAATTTTCTTTTTAATTTCGAATTATGATATCTCGACTTTGGAAA
AAAGTTTAGATAAAGATACTTGGATGTCTTACTCAATGCCACAGAAAGCT
TCCGCAGGTCAAATATCCAAAAGAAGGACTAAGAAGATTCAATAAATTTA
ACGGGATAAACATGAATGCATTGTGAACCTTTTCTTCATTTAACCTACAC
TCTAACGTTTTCCAATTTTGAATATTATTTTTTTCATTTCTCAGGAAAAA
ACATTCGAGATCTGGGCGAGAAGAGGAGGAAGGGGGTGAACGTAAATCTT
CCCGTAGAAGTCGCACCAAAACTGAAATCAAACAGGAACCAATAGATAAT
ACAGACAATGGAGTAGTAAATGATAGCCTAGCACCTGATGGAGCGGTCAA
CGTGGAAGCTGGTGGAGGGGAAGCATAGATGCTAGGTTATATTTGTGATT
TTTGTTTTGGTGGTATTATTCTTGCAGTTTGTCTGGTAGTCGGAAGATAT
GAAGCGGGGTAGATCGTTGCTTAGCTACCGTTTCATGTCTCGATCAGGTT
TGAAGATTTCAAACCGTTTTTATCAAAAGTACTCGAAAAGAACATTATAT
GAAAATATTTTTTTCAGGAAAAATGACACTTGAAATTGACTTAAATTTTA
TCTTATTTGCGCGCTAAAAGAACTAAAAACAGTCAAATCCAACACAACAA
CGAGTCCGTTGGAAATGACGGATAGTACTTTTATTAGATATACATATTAT
ATTTGCACCTTTTAATATTGTGTATTGTGCTGATCATGTAAAAAGAAATG
GAGAAGCAGATTATCTCGCGAATGGTAATTTTTAAAAGTCGAATTTTTCA
ATGATTAATGAATCAATACCCAAAACTCTCTTTTCGAATCTCAAGTTTTA
AAATCTTGGATTCGGTTTTGAGCTTCATGCAGGGCAGGAATTCCTCAGGA
ATTCAGAGTTTTATGGATTAAAATGAAGTTTTTTCAAAATCTCTGGATTT
AATTCAATTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032818XLOC_032818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051856-exon-scaffold_205-1575043694:92763..92986TCONS_00051856-exon-scaffold_205-1575043694:92763..92986Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1575043694:91012..91105TCONS_00051856-exon-scaffold_205-1575043694:91012..91105Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1575043694:90801..90847TCONS_00051856-exon-scaffold_205-1575043694:90801..90847Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1575043694:89725..90492TCONS_00051856-exon-scaffold_205-1575043694:89725..90492Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1510915933:92763..92986TCONS_00051856-exon-scaffold_205-1510915933:92763..92986Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1510915933:91012..91105TCONS_00051856-exon-scaffold_205-1510915933:91012..91105Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1510915933:90801..90847TCONS_00051856-exon-scaffold_205-1510915933:90801..90847Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1510915933:89725..90492TCONS_00051856-exon-scaffold_205-1510915933:89725..90492Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1491911889:92763..92986TCONS_00051856-exon-scaffold_205-1491911889:92763..92986Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1491911889:91012..91105TCONS_00051856-exon-scaffold_205-1491911889:91012..91105Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1491911889:90801..90847TCONS_00051856-exon-scaffold_205-1491911889:90801..90847Clytia hemisphaericaexon
TCONS_00051856-exon-scaffold_205-1491911889:89725..90492TCONS_00051856-exon-scaffold_205-1491911889:89725..90492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:89725..92986 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.6089	76.5156	62.9205	72.7914	62.7016	47.2195	48.3545	53.5995	34.444	42.9146	41.6263	33.7571	35.8649	41.4779	36.0204	38.4597	38.955	36.7584	21.2103	18.8855	31.6211	31.0747	60.4467	49.1633	45.8769	49.6395	22.929	24.1819	44.0276	48.4676
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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