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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051861 ID=TCONS_00051861|Name=TCONS_00051861|organism=Clytia hemisphaerica|type=transcript|length=2601bpRun BLAST on NCBI protein sequence of TCONS_00051861-protein >TCONS_00051861-protein ID=TCONS_00051861-protein|Name=TCONS_00051861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=589bp XPYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKERun BLAST on NCBI transcript from alignment at scaffold_205:120882..141565- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051861 ID=TCONS_00051861|Name=TCONS_00051861|organism=Clytia hemisphaerica|type=transcript|length=20684bp|location=Sequence derived from alignment at scaffold_205:120882..141565- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_205:120882..141565- >TCONS_00051861 ID=TCONS_00051861|Name=TCONS_00051861|organism=Clytia hemisphaerica|type=CDS|length=28320bp|location=Sequence derived from alignment at scaffold_205:120882..141565- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051861 vs. Swiss-Prot (Human)
Match: CLCN3 (H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens GN=CLCN3 PE=1 SV=2) HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0 Identity = 379/588 (64.46%), Postives = 465/588 (79.08%), Query Frame = 2
Query: 5 PYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKEGPLVHVAACIGNVFVRLFPKYHGNEAKRREVLXXXXXXXXXXXXXXPIGGVLFSLEEVSYYFPMKTLWRTFFCALMAALTLGYMNPYGNGRLVMFAVDYNLPWQLFEXXXXXXXXXXXXXXXXXXXKANLFWCKLRKSSILGKKPIVEVFTVAIITAIVAYPNEYTRQPASRLISDLFQNCGPEDGSPLCDYNYHSNVTHNINSNTYPHRSIGPGVYNALWKLTLAMLFKGLITIFTFGIKVPAGLFIPSLAVGACAGRIVGIFMENLVDSNKDFFLWKSVCQNAQGHCILPGLYAMIGAASTLGGVTRMTVSLVVIMFELTGGLTYIVPLMVAVMTSKWVGDALGKEGIYDEHIHLNGYPFLDSKEEFTHTTLAADVMKPRRNASPLICIPKTGSTVGELEHLMEEYRFNGFPVIVDHESQMLSGFVTRRDLKVAIHHGRLRNDQIVTPSKVYFSKKEPTPGAGGIPALCLRHILDVSPFTVSDATPMESVIDMFRKLGLRQILITHNGKLLGIITKKDVLRHIFQMKNQDPDSILFH 1768
PYACGSGIPEIKTIL GFII+GYLG WTL++K+ TL+ AV+SGLSLGKEGPLVHVA C GN+F LFPKY NEAK+REVLSAA+AAGVSVAFGAPIGGVLFSLEEVSYYFP+KTLWR+FF AL+AA L +NP+GN RLV+F V+Y+ PW LFEL PFI+LGVFGG++G+ FI+AN+ WC+ RKS+ GK P++EV VA ITA++A+PN YTR S LI +LF +CGP + S LCDY N + ++ P R G GVY+A+W+L LA++FK ++T+FTFGIKVP+GLFIPS+A+GA AGRIVGI +E L + D+F++K C+ CI PGLYAM+GAA+ LGGVTRMTVSLVVI+FELTGGL YIVPLM AVMTSKWVGDA G+EGIY+ HI LNGYPFLD+KEEFTHTTLAADVM+PRRN PL + + TV ++E+++ E +NGFPVI+ ESQ L GF RRDL +AI R + + IV S+V F++ P+ A L LR ILD+SPFTV+D TPME V+D+FRKLGLRQ L+THNG+LLGIITKKD+LRH+ Q NQDP SI+F+
Sbjct: 234 PYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTKFGKYPVLEVIIVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDD--IPDRPAGIGVYSAIWQLCLALIFKIIMTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDWFIFKEWCE-VGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRNDPPLAVLTQDNMTVDDIENMINETSYNGFPVIMSKESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDILRHMAQTANQDPASIMFN 818 The following BLAST results are available for this feature:
BLAST of TCONS_00051861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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