TCONS_00051829 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051829
Unique Name	TCONS_00051829
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1718

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_205:319685..322951+

transcript sequence

>TCONS_00051829 ID=TCONS_00051829|Name=TCONS_00051829|organism=Clytia hemisphaerica|type=transcript|length=1718bp
CCTCCTCCACCTCCACCAGGTTTTGGCCCACCTCCACCGCCCCCACCTCC
AGGACCACCAGGTATGGGAGGACCTCCCCCACCACCTCCTCCTCCTGGAG
GTGGTCCACCAGGACCGCCACCCCCACCAGGGGCTCCCCCACCACCAGGA
GGATTTAGAGCTGGTCCTCAACTTCCTGCTGGATTAacacaaaagaagaa
attcaacCCTAAGAAACAACCGAAAAGAATTAATTGGGATCCCATTCACG
TCACCAAAATCAAAGGCGGATCATTCTGGACCAAAGTCAAAGAAGAAAAA
CTGGAGAAGGAGGATTTCTTAGATCTCTTGTCTGAAACTTTCGCATCCAA
ACCTGGGAAAAGAATTGGTGACCCCGGACCAGGAGGGGGTGGCGCCGCAA
ccgaagaaaaacaaaagaagggACACGAGCTTAAAGTTTTGGATGGAAAA
ACTGCTCAAAATCTTTccattttcgtTGGATCATTTGGTTCCAAAATGTC
GTATGAGGATATCAAGAAGAGAATTCTGGAGTTTGATGAAGAAATTATCG
ACAGCAGCGCTCTTGAGAACATGCAAAAATTACTGCCAACTAAAGAACAG
ATGGACCAACTGAAAGCATTCCAAAGTGAATATGACCATCTCAATAAATC
AGAACAGTTTGCCTTGGTTATCTCATCGATTCCTCGGTTAGAACAACGTA
TCAATTGCATGAAAGCCAAACTTGACTTCCTCGAACAAATGGTTGACGTT
AAACCGGATCTTGCGAATGCCATTGAATCATGCAAAGAAGTTAAAAACAG
CCCAAGGTGGTCCAGATTCTTAGAGctctTGTTACTGGTGGGAAACTACA
TGAACTCTGGCACCAAGAAATCACAAGCTTTTGGTTTTGATTTGAACGTG
TTGACCAAGATTGGCAACACAAAATCAGCAGACGGTAAATTGACGTTAAC
ACATTTCTTAGCTGAGATGATCCAAGAAAAATATCCTGAAGTCGATGGAT
GGGAAAACGATCTGTCTCATCTTAAAGAAGGCCATCGAGTATCAGACGAG
CAAACGACGAAAACAGTGAACGGTTTGAATGCCATGTTGACGAGGATTCG
AAACGAATTGAAACATCATGATACGCCTTTCTCTGCTGATGATAAATTTG
GAAACAAAATGACCGTATCTTTTCACGCCTGAAATCGTTTTACTGCTTTC
caaattttacttttatatcatttttagcGGTGTCCACCACTAAAGTTTCT
TTGTTTCGGATTTCAATTTTGCGATATCAGGAGTGGCACAGGTAACGTTA
GTCAGCTCGAAACCATCGCGCGGTGTTTTCATTGCCACTCTAGGGTATCA
TAAAAAACCTAGAAGACTCAAGAATTAGCTTTAAAATGAAGGAAtataat
aaatcaataaattaaTTCATAATGAATAAGGCATGTTTCTAGTTCACTTT
GGGAGAAAGAGAATTTTCTTTTAGTTCGAGACCTGTCGGTCTTTTTATTA
GGTCATAAGCCTCAGAATTTTAACCATCCTCAACGTGTTCGCCGTatcga
aaactgtcaaaaaagttttgtcagaTCGAACACTAGCGGTCTCTTTGAtc
tccacgagcccaaaaaagaggtcaaaaaaggGCTTAAATTTAGGTAATGA
GCCTCATGGCTGAAATTTTACAGGTGATTAGTACAACCCTTCAggacaat
gaaaatcgaaaatctaac

Run BLAST on NCBI

transcript from alignment at scaffold_205:319685..322951+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051829 ID=TCONS_00051829|Name=TCONS_00051829|organism=Clytia hemisphaerica|type=transcript|length=3267bp|location=Sequence derived from alignment at scaffold_205:319685..322951+ (Clytia hemisphaerica)
CCTCCTCCACCTCCACCAGGTTTTGGCCCACCTCCACCGCCCCCACCTCC
AGGACCACCAGGTATGGGAGGACCTCCCCCACCACCTCCTCCTCCTGGAG
GTGGTCCACCAGGACCGCCACCCCCACCAGGGGCTCCCCCACCACCAGGA
GGATTTAGAGCTGGTCCTCAACTTCCTGCTGGATTAacacaaaagaagaa
attcaacCCTAAGAAACAACCGAAAAGAATTAATTGGGATCCCATTCACG
TCACCAAAATCAAAGGCGGATCATTCTGGACCAAAGTCAAAGAAGAAAAA
CTGGAGAAGGAGGATTTCTTAGATCTCTTGTCTGAAACTTTCGCATCCAA
ACCTGGGAAAAGAATTGGTGACCCCGGACCAGGAGGGGGTGGCGCCGCAA
ccgaagaaaaacaaaagaagggACACGAGCTTAAAGTTTTGGATGGAAAA
ACTGCTCAAAATCTTTGTAAGTGATAACTTAACTGAATCAATCAACATCC
ttgaattattttaaagaatgtCGACAAAATGCTTACGATTTTCCACTACT
TCATTTTTCACTCAAGTTTGGCTCAAATCAGTCACGTTTTGACAAGTTTA
TCATTTacaatttttagccattttcgtTGGATCATTTGGTTCCAAAATGT
CGTATGAGGATATCAAGAAGAGAATTCTGGAGTTTGATGAAGAAATTATC
GACAGCAGCGCTCTTGAGAACATGCAAAAATTACTGCCAACTAAAGAACA
GGTANAAATTATCGACAGCAGCGCTCTTGAGAACATGCAAAAATTACTAC
CAACTAAAGAACAGGTGACTCTATCAAATATGAACAAATGAATTTTTTCA
TGCAGAAACTAGTAGaaagtcatcattttcaaaatgtttaattttcatga
aataaaatcTTGAGGCTAATTCTCTTCAAATTCATCGTCACAACAATGAA
CTTTTTTTCTCTAGATGGACCAACTGAAAGCATTCCAAAGTGAATATGAC
CATCTCAATAAATCAGAACAGTTTGCCTTGGTTGTAAGTCTAATCTTTGT
TTGTTCATCTACAGTATCGTAATTGTaatattgttttcgaaaatccgcaa
agcttttgattggtcaagcgctgaaattctgttgtaatgtcacgtgacct
cgTTAGGATTTCCTACCGAAATAcggcacgacatctagcccttacggctt
tataaatctgttcATACAGTGCTGATGAGTCCCAATAAGGAcaaaatgca
tatgctgctctgctaCTCAATCTCCtaaaagaagatagttggacagaaag
tCTTTGAATTTCTCTAAATATGCATTTTGGTGGTTATCGTATTTTCTAGA
TCTCATCGATTCCTCGGTTAGAACAACGTATCAATTGCATGAAAGCCAAA
CTTGACTTCCTCGAACAAATGGTTGACGTTAAACCGGTGAGTCTGACGCa
tttaataaaaacaatttgtaaatttttgacaTTGTTTCGTAAATACGAAA
GCAAATTTCTTCAAGGTATCTTGACTTTTATTGCATTTGATCTTTTTTTA
GGATCTTGCGAATGCCATTGAATCATGCAAAGAAGTTAAAAACAGCCCAA
GGTGGTCCAGATTCTTAGAGGTGGGTGTTATCTGTTCCCTGACGAcaatg
tcaaaataaaattctatGTAATTCAGGCAGTATATTCCCACTTAATCAAC
AAGTTAAGCCCAGTGCAAGCCTGAATAACTGAAATTGAGTTTCTAATATT
TACTCTTGTTTCGAAAACTCTTAATGTTATTCTgtgctttttttttcttt
ttagctctTGTTACTGGTGGGAAACTACATGAACTCTGGCACCAAGAAAT
CACAAGCTTTTGGTTTTGATTTGAACGTGTTGACCAAGGTTTGATTTCAG
TATCATATACCGTCATTTATCTAATCAAAAAGTCTACGATTGAGGTGCTA
AAACCTTTTCTTGTGACTTTAAactcaaaatgtttttatacTATTTTCAA
CAGATTGGCAACACAAAATCAGCAGACGGTAAATTGACGTTAACACATTT
CTTAGCTGAGATGATCCAAGAAAAATATCCTGAAGTCGATGGATGGGAAA
ACGATCTGTCTCATCTTAAAGAAGGCCATCGAGGTAATATCTCACTTTCA
AATCCCATGACAACTGCAACTTTCTGATCGTGAAATTTTGGGATTCGCTC
TTTGTTTTGAGCTTTTCGACTTTCAGCTATTAAGTGTCCACATTNGTTTG
GGATTCGCTCTTTGTAAGAGCTTTTCGACTTTCAGCTATTAAAAGTGTCc
acatttcaaaatgtttaagtGACTTTAGGACCAACAATCCTGCTTTTGCA
TAAGTTCAAATATTGGGCTTTGCGAATTGAAAGGTTTGCTTAAACTGGTT
GCCTAGGGTTTCTAGTTTTACCAGAGGTGACGGATATGTAGCGGAATTTC
AAATATCAACCCTTGGAAAAGAAAGAACTGCCATTTTTTTAATCCATTTA
TAATGTTCGATATTTTCCGTACTCTTGACCTTTGGGAAGTAAAATTTCCC
CTTCAGAACTGATGCCACTCTTCTTTCTTGCATTACAGTATCAGACGAGC
AAACGACGAAAACAGTGAACGGTTTGAATGCCATGTTGACGAGGATTCGA
AACGAATTGAAACATCATGATACGCCTTTCTCTGCTGATGATAAATTTGG
AAACAAAATGACCGTATCTTTTCACGCCTGAAATCGTTTTACTGCTTTCc
aaattttacttttatatcatttttagcGGTGTCCACCACTAAAGTTTCTT
TGTTTCGGATTTCAATTTTGCGATATCAGGAGTGGCACAGGTAACGTTAG
TCAGCTCGAAACCATCGCGCGGTGTTTTCATTGCCACTCTAGGGTATCAT
AAAAAACCTAGAAGACTCAAGAATTAGCTTTAAAATGAAGGAAtataata
aatcaataaattaaTTCATAATGAATAAGGCATGTTTCTAGTTCACTTTG
GGAGAAAGAGAATTTTCTTTTAGTTCGAGACCTGTCGGTCTTTTTATTAG
GTCATAAGCCTCAGAATTTTAACCATCCTCAACGTGTTCGCCGTatcgaa
aactgtcaaaaaagttttgtcagaTCGAACACTAGCGGTCTCTTTGAtct
ccacgagcccaaaaaagaggtcaaaaaaggGCTTAAATTTAGGTAATGAG
CCTCATGGCTGAAATTTTACAGGTGATTAGTACAACCCTTCAggacaatg
aaaatcgaaaatctaac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032808	XLOC_032808	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_205	supercontig	scaffold_205:319685..322951 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.437837	0	0	0	0	0	0	0	0	0	0	0	0	0	1.14369	0

Blast

[Close]

BLAST of TCONS_00051829 vs. Swiss-Prot (Human)
Match: DIAP1 (Protein diaphanous homolog 1 OS=Homo sapiens GN=DIAPH1 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.679e-59
Identity = 132/335 (39.40%), Postives = 208/335 (62.09%), Query Frame = 1

Query:  160 AGPQLPAGLTXXXXXXXXXXXXRINWDPIHVTKIKGGSFWTXXXXXXXXXXXXXXXXSETFASKXXXXXXXXXXXXXXAATEEKQKKGHELKVLDGKTAQNLSIFVGSFGSKMSYEDIKKRILEFDEEIIDSSALENMQKLLPTKEQMDQLKAFQSEYDHLNKSEQFALVISSIPRLEQRINCMKAKLDFLEQMVDVKPDLANAIESCKEVKNSPRWSRFLELLLLVGNYMNSGTKKSQAFGFDLNVLTKIGNTKSADGKLTLTHFLAEMIQEKYPEVDGWENDLSHLKEGHRVSDEQTTKTVNGLNAMLTRIRNELKHHDTPFSADDKFGNKMT 1164
            A P LP GLT KK + P+ Q +R NW  +    +    FWTKVKE++ E  +    L+ TF+++           GG      ++KK  ELKVLD KTAQNLSIF+GSF  +M Y++IK  ILE +E ++  S ++N+ K +P  EQ+  L   + EYD L +SEQF +V+ ++PRL  R+N +  KL F EQ+ ++KP++ +   +C+E++ S  +S  LE+ LLVGNYMN+G++ + AFGF+++ L K+ +TKS D K+TL HFLAE+ +  YP+V  + ++L+H+++  RVS E   K ++ +   ++ +  ++++        DKF  KMT
Sbjct:  759 AAPVLPFGLTPKKLYKPEVQLRRPNWSKLVAEDLSQDCFWTKVKEDRFENNELFAKLTLTFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSF--RMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKDEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSESFSNLLEITLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSTDQKMTLLHFLAELCENDYPDVLKFPDELAHVEKASRVSAENLQKNLDQMKKQISDVERDVQNFPAATDEKDKFVEKMT 1091

The following BLAST results are available for this feature:

BLAST of TCONS_00051829 vs. Swiss-Prot (Human)

BLAST of TCONS_00051829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DIAP1	1.679e-59	39.40	Protein diaphanous homolog 1 OS=Homo sapiens GN=DI...	[more]

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TCONS_00051829 (transcript) - C. hemisphaerica