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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051831 ID=TCONS_00051831|Name=TCONS_00051831|organism=Clytia hemisphaerica|type=transcript|length=952bp
caaaaaatgctGGCAGATAATACACAACTAATACAAAGTGGCTTACACAA
AAGAAACCATGAAGTTCAATCACGTGACTTTGCGATCCAATCAGATGACG
AGAAATTAAGAAcagaatttcatgctcaaaagttcaagaatcgTGTATTG
ATTAACATCACGCAATGTCAGAGTTTTGGATCAGTAATAAACATCACGAA
AGATGAAAATGTACCAATGACGACTCCAAACAGTGAGATTTCAGTCAATG
TTCAGTTCTTGTTAGGTGAACAACATCAAATGTATAAAATTATCGCCAAA
AAGATCGGACAAATCGTCTTTCAAGAAACGGAACTACCTGTTTTATTAAC
GCTGGCTTTGAAATCGAAGACACCAGAAATGTTTAAcGTTATTTCACTCT
ATCAAACGAAGACAAACATATTCATAAGATGGATATTTGGTAAAGAAGAG
AACAACACAACAGAAATGGTTAATAGGAAGACCTCTTTAACGCAAGCCAA
ACGTATTTACGAATGCCCGTTAGTTTTTGTTGCACCGGAAGAAGCTAACA
TTCGTTGGAAGAAACTCTACAAACCAACCGGGAAGCTGCGAAAACCTGAT
GCACGACCGAAGCGACAAAATGAACTCTCGTTGAAACAACATGAGAGTTT
GCAAAAATTACTAAATATTTACGCTGAACAATCGAGCAAAAATTATCGTG
TTAGTGCTACGCATGTAGGCTCATTACCTAAACTAGTTACCTCCGCTAAT
AATCGCAAGAAGACCGTGATCGAAATTGGACGGACCAGTCAAATGCTACC
AAAAATAGTGGCGGAAGCGACCGCCCGTAATAAACGCCAATCTTCTAAAA
CTAATGATATTCACTTTCCTAGTATCTTAGAATAAACCTTAATAATGCCA
TACTATAATTTGacgctgtttttttttatttctgtaaCATCACgtaaact
ac Run BLAST on NCBI protein sequence of TCONS_00051831-protein >TCONS_00051831-protein ID=TCONS_00051831-protein|Name=TCONS_00051831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
QKMLADNTQLIQSGLHKRNHEVQSRDFAIQSDDEKLRTEFHAQKFKNRVL
INITQCQSFGSVINITKDENVPMTTPNSEISVNVQFLLGEQHQMYKIIAK
KIGQIVFQETELPVLLTLALKSKTPEMFNVISLYQTKTNIFIRWIFGKEE
NNTTEMVNRKTSLTQAKRIYECPLVFVAPEEANIRWKKLYKPTGKLRKPD
ARPKRQNELSLKQHESLQKLLNIYAEQSSKNYRVSATHVGSLPKLVTSAN
NRKKTVIEIGRTSQMLPKIVAEATARNKRQSSKTNDIHFPSILE Run BLAST on NCBI transcript from alignment at scaffold_205:338789..340324+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051831 ID=TCONS_00051831|Name=TCONS_00051831|organism=Clytia hemisphaerica|type=transcript|length=1536bp|location=Sequence derived from alignment at scaffold_205:338789..340324+ (Clytia hemisphaerica)
caaaaaatgctGGCAGATAATACACAACTAATACAAAGTGGCTTACACAA
AAGAAACCATGAAGTTCAATCACGTGACTTTGCGATCCAATCAGATGACG
AGAAATTAAGAAcagaatttcatgctcaaaagttcaagaatcgTGTATTG
ATTAACATCACGCAATGTCAGAGTTTTGGATCAGTAATAAACATCACGAA
AGATGAAAATGTACCAATGACGACTCCAAACAGTGAGATTTCAGTCAATG
TTCAGTTCTTGTTAGGTGAACAACATCAAATGTATAAAATTATCGCCAAA
AAGATCGGACAAATCGTCTTTCAAGAAACGGAACTACCTGTTTTATTAAC
GCTGGCTTTGAAATCGAAGACACCAGAAATGTTTAAGTTAGTGACTGAGA
ATATTGCAAAAGTTGACGTATGggaaatgttttgatgttgggACACTTGT
CAAAATTCATTATCAGACACATCAAATAACTTTAGTGTGTTACATACATT
TGAGTAAACGCGTGGGATCGTCTTGATAGAGCACTAGGATACTACGAGCT
AAAAAGAGGAAAAGCGACATGCACGACTTTGGGTCGTAGTTTTTATCTAA
ATTTCCTCAAAACGGACGAAATTAtatatttcttattttgaccatctTCA
ATGTACTCAGTAGGGGTGCATAGTTGTATTTTGCTATAAAACAACTAAGA
ATTTTACTACGGTGATGATAAGTAAAGAATTTCTGTCTTTCTACATTACA
TTTTCGATCTGTATCCATCTTTCTTTCTTGTTCAATGCGTCAtcgttttt
cgatttttagtttttttcacaTAAGACGAagtttcaattgttttaaaaCC
TATTCATTTACAGATTTATGTGGAATCCTAGAAGAGTTTCGATGTTCCAA
AACAACTTCTTTGTCACtttcaaaattgacgtcaaataacttttttttaa
cgtaagttatttttttctagcGTTATTTCACTCTATCAAACGAAGACAAA
CATATTCATAAGATGGATATTTGGTAAAGAAGAGAACAACACAACAGAAA
TGGTTAATAGGAAGACCTCTTTAACGCAAGCCAAACGTATTTACGAATGC
CCGTTAGTTTTTGTTGCACCGGAAGAAGCTAACATTCGTTGGAAGAAACT
CTACAAACCAACCGGGAAGCTGCGAAAACCTGATGCACGACCGAAGCGAC
AAAATGAACTCTCGTTGAAACAACATGAGAGTTTGCAAAAATTACTAAAT
ATTTACGCTGAACAATCGAGCAAAAATTATCGTGTTAGTGCTACGCATGT
AGGCTCATTACCTAAACTAGTTACCTCCGCTAATAATCGCAAGAAGACCG
TGATCGAAATTGGACGGACCAGTCAAATGCTACCAAAAATAGTGGCGGAA
GCGACCGCCCGTAATAAACGCCAATCTTCTAAAACTAATGATATTCACTT
TCCTAGTATCTTAGAATAAACCTTAATAATGCCATACTATAATTTGacgc
tgtttttttttatttctgtaaCATCACgtaaactac Coding sequence (CDS) from alignment at scaffold_205:338789..340324+ >TCONS_00051831 ID=TCONS_00051831|Name=TCONS_00051831|organism=Clytia hemisphaerica|type=CDS|length=1770bp|location=Sequence derived from alignment at scaffold_205:338789..340324+ (Clytia hemisphaerica)
caaaaaatgctGGCAGATAATACACAACTAATACAAAGTGGCTTACACAA
AAGAAACCATGAAGTTCAATCACGTGACTTTGCGATCCAATCAGATGACG
AGAAATTAAGAAcagaatttcatgctcaaaagttcaagaatcgTGTATTG
ATTAACATCACGCAATGTCAGAGTTTTGGATCAGTAATAAACATCACGAA
AGATGAAAATGTACCAATGACGACTCCAAACAGTGAGATTTCAGTCAATG
TTCAGTTCTTGTTAGGTGAACAACATCAAATGTATAAAATTATCGCCAAA
AAGATCGGACAAATCGTCTTTCAAGAAACGGAACTACCTGTTTTATTAAC
GCTGGCTTTGAAATCGAAGACACCAGAAATGTTTAAcGTTATTTCACTCT
ATCAAACGAAGACAAACATATTCATAAGATGGATATTTGGTAAAGAAGAG
AACAACACAACAGAAATGGTTAATAGGAAGACCTCTTTAACGCAAGCCAA
ACGTATTTACGAATGCCCGTTAGTTTTTGTTGCACCGGAAGAAGCTAACA
TTCGTTGGAAGAAACTCTACAAACCAACCGGGAAGCTGCGAAAACCTGAT
GCACGACCGAAGCGACAAAATGAACTCTCGTTGAAACAACATGAGAGTTT
GCAAAAATTACTAAATATTTACGCTGAACAATCGAGCAAAAATTATCGTG
TTAGTGCTACGCATGTAGGCTCATTACCTAAACTAGTTACCTCCGCTAAT
AATCGCAAGAAGACCGTGATCGAAATTGGACGGACCAGTCAAATGCTACC
AAAAATAGTGGCGGAAGCGACCGCCCGTAATAAACGCCAATCTTCTAAAA
CTAATGATATTCACTTTCCTAGTATCTTAGAATAAcaaaaaatgctGGCA
GATAATACACAACTAATACAAAGTGGCTTACACAAAAGAAACCATGAAGT
TCAATCACGTGACTTTGCGATCCAATCAGATGACGAGAAATTAAGAAcag
aatttcatgctcaaaagttcaagaatcgTGTATTGATTAACATCACGCAA
TGTCAGAGTTTTGGATCAGTAATAAACATCACGAAAGATGAAAATGTACC
AATGACGACTCCAAACAGTGAGATTTCAGTCAATGTTCAGTTCTTGTTAG
GTGAACAACATCAAATGTATAAAATTATCGCCAAAAAGATCGGACAAATC
GTCTTTCAAGAAACGGAACTACCTGTTTTATTAACGCTGGCTTTGAAATC
GAAGACACCAGAAATGTTTAAcGTTATTTCACTCTATCAAACGAAGACAA
ACATATTCATAAGATGGATATTTGGTAAAGAAGAGAACAACACAACAGAA
ATGGTTAATAGGAAGACCTCTTTAACGCAAGCCAAACGTATTTACGAATG
CCCGTTAGTTTTTGTTGCACCGGAAGAAGCTAACATTCGTTGGAAGAAAC
TCTACAAACCAACCGGGAAGCTGCGAAAACCTGATGCACGACCGAAGCGA
CAAAATGAACTCTCGTTGAAACAACATGAGAGTTTGCAAAAATTACTAAA
TATTTACGCTGAACAATCGAGCAAAAATTATCGTGTTAGTGCTACGCATG
TAGGCTCATTACCTAAACTAGTTACCTCCGCTAATAATCGCAAGAAGACC
GTGATCGAAATTGGACGGACCAGTCAAATGCTACCAAAAATAGTGGCGGA
AGCGACCGCCCGTAATAAACGCCAATCTTCTAAAACTAATGATATTCACT
TTCCTAGTATCTTAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051831-exon-scaffold_205-1491911889:338789..339174 | TCONS_00051831-exon-scaffold_205-1491911889:338789..339174 | Clytia hemisphaerica | exon |
| TCONS_00051831-exon-scaffold_205-1510915933:338789..339174 | TCONS_00051831-exon-scaffold_205-1510915933:338789..339174 | Clytia hemisphaerica | exon |
| TCONS_00051831-exon-scaffold_205-1575043694:338789..339174 | TCONS_00051831-exon-scaffold_205-1575043694:338789..339174 | Clytia hemisphaerica | exon |
| TCONS_00051831-exon-scaffold_205-1491911889:339759..340324 | TCONS_00051831-exon-scaffold_205-1491911889:339759..340324 | Clytia hemisphaerica | exon |
| TCONS_00051831-exon-scaffold_205-1510915933:339759..340324 | TCONS_00051831-exon-scaffold_205-1510915933:339759..340324 | Clytia hemisphaerica | exon |
| TCONS_00051831-exon-scaffold_205-1575043694:339759..340324 | TCONS_00051831-exon-scaffold_205-1575043694:339759..340324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:338789..340324 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018788 | Proteasome_assmbl_chp_3 |
| IPR018854 | Psome_chaperone_3/4 |
Blast
The following BLAST results are available for this feature:
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