TCONS_00051953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051953
Unique NameTCONS_00051953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051953 ID=TCONS_00051953|Name=TCONS_00051953|organism=Clytia hemisphaerica|type=transcript|length=418bp
caattatttgcaaaattaaatccccgtGAAAATTTACAGTCAAAGTAAGT
CCCGAAAATAAgtaccgcaaaaattaattcattTCACGAGGAGAGCTgtc
tcgcaaaaattaattcccttaaggtattatcAGTTTCTATTGGACAGAAA
ATCGAGAACAATAGGTTCAGGGAAGAATGAACATTGATTGGTATAGTCAT
GTAAACTTAATTAAAAAAGCCCTAAACCtgcaaacctaggtttacaaaGC
GTAAACCCAGGTTTTATAAAGCACAAATCTAGGTTTTATAAAGCACAAAC
CTAGGTTTACTACAGAGCACAAACCCAGGTTTACTAAGAGTATACCtagg
ttttaatattttttgtttagtgCATTTATTTGGCTTCCACAATCAAGCAA
CCTTGATTCACAAACCAA
Run BLAST on NCBI

transcript from alignment at scaffold_206:236267..236684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051953 ID=TCONS_00051953|Name=TCONS_00051953|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at scaffold_206:236267..236684 (Clytia hemisphaerica)
TTGGTTTGTGAATCAAGGTTGCTTGATTGTGGAAGCCAAATAAATGcact
aaacaaaaaatattaaaacctaGGTATACTCTTAGTAAACCTGGGTTTGT
GCTCTGTAGTAAACCTAGGTTTGTGCTTTATAAAACCTAGATTTGTGCTT
TATAAAACCTGGGTTTACGCtttgtaaacctaggtttgcaGGTTTAGGGC
TTTTTTAATTAAGTTTACATGACTATACCAATCAATGTTCATTCTTCCCT
GAACCTATTGTTCTCGATTTTCTGTCCAATAGAAACTgataataccttaa
gggaattaatttttgcgagacAGCTCTCCTCGTGAaatgaattaattttt
gcggtacTTATTTTCGGGACTTACTTTGACTGTAAATTTTCacggggatt
taattttgcaaataattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032884XLOC_032884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051953-exon-scaffold_206-1491911889:236267..236684TCONS_00051953-exon-scaffold_206-1491911889:236267..236684Clytia hemisphaericaexon
TCONS_00051953-exon-scaffold_206-1510915933:236267..236684TCONS_00051953-exon-scaffold_206-1510915933:236267..236684Clytia hemisphaericaexon
TCONS_00051953-exon-scaffold_206-1575043694:236267..236684TCONS_00051953-exon-scaffold_206-1575043694:236267..236684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:236267..236684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3395	0.662132	0	0.188037	0.228917	0.180894	0	0.408628	0	0.177184	0.171979	0.565263	0.112895	0	0.578338	0.724086	0.764584	0.130612	0.90224	0.377652	1.80536	0.240162	0.194632	0	0.364506	0.325313	0.465522	0	0.188409	0.191959
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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