TCONS_00051976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051976
Unique NameTCONS_00051976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051976 ID=TCONS_00051976|Name=TCONS_00051976|organism=Clytia hemisphaerica|type=transcript|length=877bp
TAGcattcaaattataaaaaagagaaaatcaacAAGTATGCCTAGACGAA
AAACGACAAGATCTATTAAACGTATAAAAGTAGAAGAAGACACGAGTGAA
GAAGATACTGGTCTAAATGATAATGATTGGCGAAAACAACATCGGTGTAA
ACGTTGCACCAAAGTCTTCATAAATACATCGAGTTTGAAAGTCCATATGA
GGACACACAATCaggaaaaatcttttgtgtGTGAGGAATGTGGTAAAACG
TTTACGAACAGTAGTAATTTGAAAGTCCATTCGCACACTCATACGGGAGA
GAAACCCTTTAAATGCGATGTTTGTGGAAAACAGTTCGTCAATTCAAGCA
ACCTAAAATGTCACAGGGTGAAACACTCCACTTCCAGAGCATATAAGCCA
CACCAGTGTGATTATTGCACAAAAAGGTTTGTAAACACCAGCAACCTTAA
AGTGCATCTGCGTGTTCATACTGGTGAAAAGCCATACAACTGTAATGTTT
GTGGTAAAACTTTTACCACGAAAGGAAATCTCACATACCATGTGACTCAA
CACCATCCTGATGATGataaagaaaacaaacaaataaaaacacaTGTTTG
TTCGCAGTGCGATAAACGATTCATAAATTCGAGCAATCTGAAAACTCATA
TGAGGGTTCACACTGGGGAACGTCCTTACAAATGTTCACATTGCTCCAAA
ACCTTCATAAACACTAGTAATTTGAAGATCCACCGAATGGGATATGGACA
TTGAACATTATATTTCAAATATACATTTTCAGCCATGGATTTTGTTTGTA
TTGAGTTCTATTGTATTTTTGCATTCTATcgttatttttgactttttata
aAGTAATATCGTTcatttttctcaaag
Run BLAST on NCBI

protein sequence of TCONS_00051976-protein

>TCONS_00051976-protein ID=TCONS_00051976-protein|Name=TCONS_00051976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
SIQIIKKRKSTSMPRRKTTRSIKRIKVEEDTSEEDTGLNDNDWRKQHRCK
RCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGE
KPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLK
VHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVC
SQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHRMGYGH
Run BLAST on NCBI

transcript from alignment at scaffold_207:47449..48325

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051976 ID=TCONS_00051976|Name=TCONS_00051976|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at scaffold_207:47449..48325 (Clytia hemisphaerica)
ctttgagaaaaatgAACGATATTACTttataaaaagtcaaaaataacgAT
AGAATGCAAAAATACAATAGAACTCAATACAAACAAAATCCATGGCTGAA
AATGTATATTTGAAATATAATGTTCAATGTCCATATCCCATTCGGTGGAT
CTTCAAATTACTAGTGTTTATGAAGGTTTTGGAGCAATGTGAACATTTGT
AAGGACGTTCCCCAGTGTGAACCCTCATATGAGTTTTCAGATTGCTCGAA
TTTATGAATCGTTTATCGCACTGCGAACAAACAtgtgtttttatttgttt
gttttctttatCATCATCAGGATGGTGTTGAGTCACATGGTATGTGAGAT
TTCCTTTCGTGGTAAAAGTTTTACCACAAACATTACAGTTGTATGGCTTT
TCACCAGTATGAACACGCAGATGCACTTTAAGGTTGCTGGTGTTTACAAA
CCTTTTTGTGCAATAATCACACTGGTGTGGCTTATATGCTCTGGAAGTGG
AGTGTTTCACCCTGTGACATTTTAGGTTGCTTGAATTGACGAACTGTTTT
CCACAAACATCGCATTTAAAGGGTTTCTCTCCCGTATGAGTGTGCGAATG
GACTTTCAAATTACTACTGTTCGTAAACGTTTTACCACATTCCTCACaca
caaaagatttttcctGATTGTGTGTCCTCATATGGACTTTCAAACTCGAT
GTATTTATGAAGACTTTGGTGCAACGTTTACACCGATGTTGTTTTCGCCA
ATCATTATCATTTAGACCAGTATCTTCTTCACTCGTGTCTTCTTCTACTT
TTATACGTTTAATAGATCTTGTCGTTTTTCGTCTAGGCATACTTgttgat
tttctcttttttataatttgaatgCTA

Coding sequence (CDS) from alignment at scaffold_207:47449..48325

>TCONS_00051976 ID=TCONS_00051976|Name=TCONS_00051976|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_207:47449..48325 (Clytia hemisphaerica)
TCAATGTCCATATCCCATTCGGTGGATCTTCAAATTACTAGTGTTTATGA
AGGTTTTGGAGCAATGTGAACATTTGTAAGGACGTTCCCCAGTGTGAACC
CTCATATGAGTTTTCAGATTGCTCGAATTTATGAATCGTTTATCGCACTG
CGAACAAACAtgtgtttttatttgtttgttttctttatCATCATCAGGAT
GGTGTTGAGTCACATGGTATGTGAGATTTCCTTTCGTGGTAAAAGTTTTA
CCACAAACATTACAGTTGTATGGCTTTTCACCAGTATGAACACGCAGATG
CACTTTAAGGTTGCTGGTGTTTACAAACCTTTTTGTGCAATAATCACACT
GGTGTGGCTTATATGCTCTGGAAGTGGAGTGTTTCACCCTGTGACATTTT
AGGTTGCTTGAATTGACGAACTGTTTTCCACAAACATCGCATTTAAAGGG
TTTCTCTCCCGTATGAGTGTGCGAATGGACTTTCAAATTACTACTGTTCG
TAAACGTTTTACCACATTCCTCACacacaaaagatttttcctGATTGTGT
GTCCTCATATGGACTTTCAAACTCGATGTATTTATGAAGACTTTGGTGCA
ACGTTTACACCGATGTTGTTTTCGCCAATCATTATCATTTAGACCAGTAT
CTTCTTCACTCGTGTCTTCTTCTACTTTTATACGTTTAATAGATCTTGTC
GTTTTTCGTCTAGGCATACTTgttgattttctcttttttataatttgaat
gCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032901XLOC_032901Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051976-proteinTCONS_00051976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051976-exon-scaffold_207-1491911889:47449..48325TCONS_00051976-exon-scaffold_207-1491911889:47449..48325Clytia hemisphaericaexon
TCONS_00051976-exon-scaffold_207-1510915933:47449..48325TCONS_00051976-exon-scaffold_207-1510915933:47449..48325Clytia hemisphaericaexon
TCONS_00051976-exon-scaffold_207-1575043694:47449..48325TCONS_00051976-exon-scaffold_207-1575043694:47449..48325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_207supercontigscaffold_207:47449..48325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.94836	6.26671	3.00672	3.76525	0.143245	0	0.204845	0.319623	0.17902	0.277182	0.430464	0.212227	0.211932	0	0.211105	0.0970919	0.478437	0.245191	0.0564575	0.118157	0.256751	0.601123	1.46149	1.49479	4.04858	4.78376	1.96627	1.01037	0.530536	0.420414
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00051976 vs. Swiss-Prot (Human)
Match: ZN227 (Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.852e-53
Identity = 94/202 (46.53%), Postives = 124/202 (61.39%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHRM 739
            K ++C+ C K F  + +L+VH R H  EK + CEECGK FT +++  +H   HTGEKP+KCDVCGK F ++S L CHR  H+     KP++C+ C K F   ++L +H RVHTGEKPY C  CGK F+   NL  H   H  +        K   C  C K F  SS L+TH RVHTGE+PY+C  C K F  +SNLK+H++
Sbjct:  378 KPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGE---KPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGE--------KRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQV 568

HSP 2 Score: 177.948 bits (450), Expect = 3.775e-50
Identity = 94/204 (46.08%), Postives = 119/204 (58.33%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHRMGY 745
            K ++CK C K F   S+L+VH   H  EK F CE CGK F+ SS L+ H   HTGEKP++CDVCGK F  SSNLK H+V H+     KP++C+ C K F   SNL  H RVH+GEKPY C  C K+F+   +   H   H  +        K + C  C K F  SS L++H RVHTGE+PYKC  C K F  +S    H+ G+
Sbjct:  490 KPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGE---KPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGE--------KPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGH 682

HSP 3 Score: 177.563 bits (449), Expect = 5.673e-50
Identity = 90/201 (44.78%), Postives = 119/201 (59.20%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHR 736
            K +RC  C K F +++ L +H RTH  EK + CEECGK F+ SSN + H   HT EKP+KC+ CGK F  S NL+ H+  H   R  KP++C+ C K F   ++  +H RVHTGEKPY C+VCGK F+    L  H   H  +        K + C  C K F  +++L  H RVHTGE+PYKC  C K F   SNL++H+
Sbjct:  322 KSYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVH---RGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGE--------KPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQ 511

HSP 4 Score: 170.629 bits (431), Expect = 1.538e-47
Identity = 93/225 (41.33%), Postives = 119/225 (52.89%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAY-------------------------KPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIH 733
            K+ +C+ C K F  +S L+ H R H  EK + C+ CGK F+ SSNLK+H   HTGEKP+KC+ CGK F   SNL  H+  HS  + Y                         KP++C  C K F  +S L+ H RVHTGEKPY C+VCGK F       YH   H  +        K + C +C K F  S NL+ H RVHTGE+P+ C  C K F   SNL++H
Sbjct:  518 KRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGE--------KPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVH 734

HSP 5 Score: 166.007 bits (419), Expect = 7.651e-46
Identity = 88/201 (43.78%), Postives = 114/201 (56.72%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHR 736
            K ++C++C K F      +VH R H  EK + C  CGK F+ SS L+ H   HTGEKP+KCDVCGK F  SS    H+  H+     KP++C+ C K F  + NL+ H RVHTGEKP+ C  CGK F+   NL  H+  H  +        K   C +C K F  S+ L+ H RVHTGE+PYKC  C K F + S L  H+
Sbjct:  602 KPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGE---KPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTRE--------KLFKCEECGKGFSQSARLEAHQRVHTGEKPYKCDICDKDFRHRSRLTYHQ 791

HSP 6 Score: 134.035 bits (336), Expect = 1.394e-34
Identity = 79/192 (41.15%), Postives = 101/192 (52.60%), Query Frame = 2 
Query:  161 KVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHR 736
            K F  +S L+ H R H  EK   C E G  F N S+   +   HTGEK ++CD CGK F +S+ L  H   H+     KP++C+ C K F  +SN + H RVHT EKPY C  CGK F    NL  H   H  +        K + C +C K F  +++   H RVHTGE+PYKC  C K F + S L  HR
Sbjct:  276 KCFSQSSHLRTHQRIHPGEKLNRCHESGDCF-NKSSFHSYQSNHTGEKSYRCDSCGKGFSSSTGLIIHYRTHTGE---KPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGE--------KPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHR 455

HSP 7 Score: 122.479 bits (306), Expect = 1.231e-30
Identity = 63/140 (45.00%), Postives = 80/140 (57.14%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQH 553
            K ++C  C K F  +S    H R H  EK + CEECGK F  S NL+ H   HTGEKP  C+ CGK F   SNL+ H   H+  + +K   C+ C K F  ++ L+ H RVHTGEKPY C++C K F  +  LTYH   H
Sbjct:  658 KPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTREKLFK---CEECGKGFSQSARLEAHQRVHTGEKPYKCDICDKDFRHRSRLTYHQKVH 794

HSP 8 Score: 115.161 bits (287), Expect = 3.647e-28
Identity = 69/193 (35.75%), Postives = 94/193 (48.70%), Query Frame = 2 
Query:  215 EKSFVCEECGKTFTNSSNLKVHSHTHTGEKPF-------------------KCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEKPYNCNVCGKTFTTKGNLTYHVTQHHPDDDKENKQIKTHVCSQCDKRFINSSNLKTHMRVHTGERPYKCSHCSKTFINTSNLKIHR 736
            EK   C ECG+ F+ S  L +H + HTGEK F                   +C   G  F N S+   ++  H+  ++Y+   CD C K F +++ L +H R HTGEKPY C  CGK F+   N   H   H  +        K + C +C K F  S NL+ H RVH GE+PYKC  C K F   ++  IH+
Sbjct:  247 EKPHPCGECGRGFSYSPRLPLHPNVHTGEKCFSQSSHLRTHQRIHPGEKLNRCHESGDCF-NKSSFHSYQSNHTGEKSYR---CDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEE--------KPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQ 427

HSP 9 Score: 101.293 bits (251), Expect = 1.899e-23
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:  134 KQHRCKRCTKVFINTSSLKVHMRTHNQEKSFVCEECGKTFTNSSNLKVHSHTHTGEKPFKCDVCGKQFVNSSNLKCHRVKHSTSRAYKPHQCDYCTKRFVNTSNLKVHLRVHTGEK 481
            K ++C+ C K F  + +L+ H R H  EK  +CEECGK F+  SNL+VH   HT EK FKC+ CGK F  S+ L+ H+  H+     KP++CD C K F + S L  H +VHTG+K
Sbjct:  686 KPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTREKLFKCEECGKGFSQSARLEAHQRVHTGE---KPYKCDICDKDFRHRSRLTYHQKVHTGKK 798
The following BLAST results are available for this feature:
BLAST of TCONS_00051976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2271.852e-5346.53Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 ... [more]
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