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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051989 ID=TCONS_00051989|Name=TCONS_00051989|organism=Clytia hemisphaerica|type=transcript|length=1884bp
TGTTATTTTTGATAAGAATTCTTGCCAATCTCTTGTGTTTTTCTGTTCCC
CCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGTT
GTTATTTTTGATAAGAATTCTTGCCAATCTCTTGTGTTTTTCTGTCCCCC
CCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGTT
GttattttttgataagaatTCTTGCCAATCTCTTGTGTTTTTCTGTTTCC
CCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGTT
GttattttttgataagaatTCTTGCCAatcttttgtgtttttctgtCCCC
CCCCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAG
TTGTTATTTTTGATAAGAATTCTTTCCAATCTCTTGTGTTTTTCTGTTCC
CCCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACagt
tgttatttttttataagaattcttGCCAATCTCTTGTGTTTTTCTGTTTC
CCCCTACTATAGCCTACTTTATTCACAACCCCGTGCTTCCCTTACACAGT
TGTTATTTTTTGATAGGAATTGAAATCGTATGAATCATAAGGCTCAAATT
TAAAAGATATTAGCAGTCCTATCCTTTCCTCTAGACATCGGTTGTAAAAT
GCCCTTATACTTCATCCAAATGATACTTTATCAGTATGaaaaaagtgacg
taaaaatCCCGTGGTGATGAAACATTTTACAGACGATTTTTTGACTGGGG
TATTGTTTTTACCAATTAATTTTCTTCCGAAGAACCCAGACTTTGCCGAT
TGCTTCGGATTTCCATTTTACTTTCTCGTTTAAGGCTTTCGAATAACCTG
AAAATTTATTTCAGGATTATTAAAACAGATTGAAGAGATGCAAATTCTAC
ACAAGGAAGAAACGAGCAAACTccacaaaaagttgaaatggtACAGCGAA
AACCAACAACTGCTTGACCGAGACATGGTCGTTCTCAAAGACAAGAGAGA
CGAAATCAAAGAACTGAGAGAGCTGGTAGATCGTTTAGAGACTGAGAACC
AGCGGCTACGTAAAGATAAAGCTTCTAACCAATCAGAGAAGAATTCCGAT
TCTACCACTATCCTTGATTTGAAACGACAGGTTAAAGAAATGGAGGACAT
CATTCGCCGAAGACATCCAAACTCCATCCCAGCCCTCATTTATGCTGCGT
CAGCAATTCCTGGTGAAAAGAAGGTCTACGAATCAGTGGAAGCCTCCAAG
AACGTCAGCGCATACCTGgagaaacaaatcaaaactttagaaaaagaACT
GGAAGATCGAGACGAAATCAATAGTCGAAAAGTTCGTGCAATCGAGCAAC
AAtacaatgcaatgactttacGATATGAAGATCACATAAAACAACTTGAA
GAGAAAGTTCAAAGTGTCTCGGTTAATAATCAAACTATGAAATCTGTCAG
TGAACTTGAAGTGGAATTATCAAGGCAAAAGTCAGAGTACGAGGACATTA
TTAATAGTTTAAGAGAGCGTTTGAAATCTgtagaaaataaatcaaaactg
gaAGAGAGAGCATCCAAAACCTCGTCTAAGTCCAATAATAAACAAGACCT
AGCTAGATTGAAAACCAAGTTCATTTCTCGAGAAGCTGAGATTGAGGAGT
TGAAATCTACGCTAATCCTTTTACAACGAGAACGTGAAGATTTGCTTGCA
AGGGAAGTAGAATCAGACGAGAGGAACTTAATAAGAAAAACACGCTCACG
GTTAATTGATCATTCGACATCTCCATTGGTCGGCGCAGAGGCTATCGAAC
GATATCAtgatttggaaaaagaaaacaaaaggcT Run BLAST on NCBI transcript from alignment at scaffold_208:63312..65546- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051989 ID=TCONS_00051989|Name=TCONS_00051989|organism=Clytia hemisphaerica|type=transcript|length=2235bp|location=Sequence derived from alignment at scaffold_208:63312..65546- (Clytia hemisphaerica)
TGTTATTTTTGATAAGAATTCTTGCCAATCTCTTGTGTTTTTCTGTTCCC
CCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGTT
GTTATTTTTGATAAGAATTCTTGCCAATCTCTTGTGTTTTTCTGTCCCCC
CCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGTT
GTTATTTTTTGATAAGAATTCTTGCCAATCTCTTGTGTTTTTCTGTTTCC
CCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGTT
GTTATTTTTTGATAAGAATTCTTGCCAATCTTTTGTGTTTTTCTGTCCCC
CCCCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAG
TTGTTATTTTTGATAAGAATTCTTTCCAATCTCTTGTGTTTTTCTGTTCC
CCCCTACTATAGCCTACTTTATTCACAACCCTGTGCTTCCATTACACAGT
TGTTATTTTTTTATAAGAATTCTTGCCAATCTCTTGTGTTTTTCTGTTTC
CCCCTACTATAGCCTACTTTATTCACAACCCCGTGCTTCCCTTACACAGT
TGTTATTTTTTGATAGGAATTGAAATCGTATGAATCATAAGGCTCAAATT
TAAAAGATATTAGCAGTCCTATCCTTTCCTCTAGACATCGGTTGTAAAAT
GCCCTTATACTTCATCCAAATGATACTTTATCAGTATGAAAAAAGTGACG
TAAAAATCCCGTGGTGATGAAACATTTTACAGACGATTTTTTGACTGGGG
TATTGTTTTTACCAATTAATTTTCTTCCGAAGAACCCAGACTTTGCCGAT
TGCTTCGGATTTCCATTTTACTTTCTCGTTTAAGGCTTTCGAATAACCTG
AAAATTTATTTCAGGATTATTAAAACAGATTGAAGAGATGCAAATTCTAC
ACAAGGAAGAAACGAGCAAACTCCACAAAAAGTTGAAATGGTACAGCGAA
AACCAACAACTGCTTGACCGAGACATGGTCGTTCTCAAAGACAAGAGAGA
CGAAATCAAAGAACTGAGAGAGCTGGTAGATCGTTTAGAGACTGAGAACC
AGCGGCTACGTAAAGATAAAGCTTCTAACCAATCAGAGAAGAATTCCGAT
TCTACCACTATCCTTGATTTGAAACGACAGGTGAGTGTCGAACGTCTTAT
GGAATTTCTTGTAGGCAAACCGTTTAACATATAGTTAAGTTGATGGTTTG
CTACCTGTGCACTGAAATCTGCTATATTTTGGAAAATGTCAAATATCAAA
AACGGGGATATATTTCTTTCGATATTCCAAACATGACAAAGTTTAGCATA
TTCTAAATAAAAGTGAATACAACTCTAATTTTGAAAGCGAAATTTGAGAA
ATAAATATATGGTGGTATAAAAGCCGTGATGTATCAGGAATTATGTTTTT
TTTTTCTATGGGTATATGATAATACTGCATGACACATTATCAACGACTCC
CGTCTAAACATTCCCTATTTCTCTTTCCAAGGTTAAAGAAATGGAGGACA
TCATTCGCCGAAGACATCCAAACTCCATCCCAGCCCTCATTTATGCTGCG
TCAGCAATTCCTGGTGAAAAGAAGGTCTACGAATCAGTGGAAGCCTCCAA
GAACGTCAGCGCATACCTGGAGAAACAAATCAAAACTTTAGAAAAAGAAC
TGGAAGATCGAGACGAAATCAATAGTCGAAAAGTTCGTGCAATCGAGCAA
CAATACAATGCAATGACTTTACGATATGAAGATCACATAAAACAACTTGA
AGAGAAAGTTCAAAGTGTCTCGGTTAATAATCAAACTATGAAATCTGTCA
GTGAACTTGAAGTGGAATTATCAAGGCAAAAGTCAGAGTACGAGGACATT
ATTAATAGTTTAAGAGAGCGTTTGAAATCTGTAGAAAATAAATCAAAACT
GGAAGAGAGAGCATCCAAAACCTCGTCTAAGTCCAATAATAAACAAGACC
TAGCTAGATTGAAAACCAAGTTCATTTCTCGAGAAGCTGAGATTGAGGAG
TTGAAATCTACGCTAATCCTTTTACAACGAGAACGTGAAGATTTGCTTGC
AAGGGAAGTAGAATCAGACGAGAGGAACTTAATAAGAAAAACACGCTCAC
GGTTAATTGATCATTCGACATCTCCATTGGTCGGCGCAGAGGCTATCGAA
CGATATCATGATTTGGAAAAAGAAAACAAAAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051989-exon-scaffold_208-1575043694:64367..65546 | TCONS_00051989-exon-scaffold_208-1575043694:64367..65546 | Clytia hemisphaerica | exon |
| TCONS_00051989-exon-scaffold_208-1575043694:63312..64015 | TCONS_00051989-exon-scaffold_208-1575043694:63312..64015 | Clytia hemisphaerica | exon |
| TCONS_00051989-exon-scaffold_208-1510915933:64367..65546 | TCONS_00051989-exon-scaffold_208-1510915933:64367..65546 | Clytia hemisphaerica | exon |
| TCONS_00051989-exon-scaffold_208-1510915933:63312..64015 | TCONS_00051989-exon-scaffold_208-1510915933:63312..64015 | Clytia hemisphaerica | exon |
| TCONS_00051989-exon-scaffold_208-1491911889:64367..65546 | TCONS_00051989-exon-scaffold_208-1491911889:64367..65546 | Clytia hemisphaerica | exon |
| TCONS_00051989-exon-scaffold_208-1491911889:63312..64015 | TCONS_00051989-exon-scaffold_208-1491911889:63312..64015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:63312..65546 - |
Blast
BLAST of TCONS_00051989 vs. Swiss-Prot (Human)
Match: CE162 (Centrosomal protein of 162 kDa OS=Homo sapiens GN=CEP162 PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 6.799e-33 Identity = 102/312 (32.69%), Postives = 182/312 (58.33%), Query Frame = 2
Query: 905 FISGLLKQIEEMQIL---HKEETSKLHKKLKWYSENQQLLDRDMVVLKDKRDEIKELRELVDRLETEN------QRLR-KDKASNQSEKNSDSTTILDLKRQVKEMEDIIRRRHPNSIPALIYAASAIPGEKKVYESVEASKNVSAYLEKQIKTLEKELEDRDEINSRKVRAIEQQYNAMTLRYEDHIKQLEEKVQSVSVNNQTMKSVSELEVELSRQKSEYEDIINSLRERLKSVENKSKLEERASKTSSKSNNKQD------------------LARLKTKFISREAEIEELKSTLILLQREREDLLARE 1756
+++G +++ E++IL HK+E S+L K+L+WY+ENQ+LLD+D + L++ +EI++L+ +++L+ E+ Q++R KDKA +D+ I DL+RQVKEME I++RR+PNS+PALI AASA ++V+ KN ++EK+IK LE +LE +DE + +R +EQQ+ M ++YE ++Q +E++ + +N + LE EL K ++ + +L + L+ + ++ K N+K D L RL + +++ EI++L T+ LQ++R +L+ +
Sbjct: 835 YVTG--EKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKA-------ADAKKIQDLERQVKEMEGILKRRYPNSLPALILAASA------AGDTVD--KNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQ-QEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDV------LKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQ 1122
The following BLAST results are available for this feature:
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