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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052035 ID=TCONS_00052035|Name=TCONS_00052035|organism=Clytia hemisphaerica|type=transcript|length=957bp
TGGTGAAAACAAGCATGGATAGAATTCTAAaatcaagattttatttttca
ggtctTCTCCGAGCAATTTATCAATATGGTTTGGTGACTGGATGCAATGT
GTTGATTGAATTCGAAAAACAGAACAAAAAAAACACGATGTCTACCGAGC
GTTTCAGCAACTCTACAGAATACATGCTAAAACGGAATAtagaaattttt
caaccaattgAGGCGTCATCTCCAACATCGAAGTCTCTTATTTCTTTGGG
AAGTCCACTATCTTTATCAACTCCACTCTCGCTATCACCTTTATTTGAAT
CAATTCCTCAGTCACAGATATTGGATCTATCATTTGGCTCCCTTTCTTCA
CCTCAGCTAAACACATCTACTCCTCTAGCAGAACAACCACGGCCAGTCGT
ATCGCAAACTACGTCTGCTCTCAGACAACTACCATCAAACGTATCACAAG
CCACGCCTGCTCTCAGACAACCACGGCCAGTCGCACCACAAATTACGTCT
AATCTCTCTCAACCCCGATCAATCGTATCACAATCTGCGTCTACTTCAAA
ACAACCACGACCAGTCGCCCCAAAAATTAAGTCTAATATCTCACAACCCC
GATCAATCGTATTACAAACTGTGTCTACTTTAAGACAACCACGACCAGTC
ATGTTGCAACCTATGCCAGGTCTCATACAACCACGACAAGCAGTATCACA
ACCTAGACTCACAAAAACGATAAAGattttaaataacaaaaatttgacTG
ACAACTCAACACAATTTGTTATCCAATCAAAACCTAACAAAAATACAGAA
AGTGGTTTCAAGCCACCAATGCCATTTACCGAACACGGCTATGCCTCTAC
GCACATGAGTGATCAAACACTTAAAGAAAACTCACCATCagaaaaaatta
ggaaaagAAGACTATCCAATGCCAGAGTATCTGGACTTAAAAAGGCCAAA
GCTTCTG Run BLAST on NCBI protein sequence of TCONS_00052035-protein >TCONS_00052035-protein ID=TCONS_00052035-protein|Name=TCONS_00052035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
VKTSMDRILKSRFYFSGLLRAIYQYGLVTGCNVLIEFEKQNKKNTMSTER
FSNSTEYMLKRNIEIFQPIEASSPTSKSLISLGSPLSLSTPLSLSPLFES
IPQSQILDLSFGSLSSPQLNTSTPLAEQPRPVVSQTTSALRQLPSNVSQA
TPALRQPRPVAPQITSNLSQPRSIVSQSASTSKQPRPVAPKIKSNISQPR
SIVLQTVSTLRQPRPVMLQPMPGLIQPRQAVSQPRLTKTIKILNNKNLTD
NSTQFVIQSKPNKNTESGFKPPMPFTEHGYASTHMSDQTLKENSPSEKIR
KRRLSNARVSGLKKAKAS Run BLAST on NCBI transcript from alignment at scaffold_208:368494..369450 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052035 ID=TCONS_00052035|Name=TCONS_00052035|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at scaffold_208:368494..369450 (Clytia hemisphaerica)
CAGAAGCTTTGGCCTTTTTAAGTCCAGATACTCTGGCATTGGATAGTCTT
cttttcctaattttttctGATGGTGAGTTTTCTTTAAGTGTTTGATCACT
CATGTGCGTAGAGGCATAGCCGTGTTCGGTAAATGGCATTGGTGGCTTGA
AACCACTTTCTGTATTTTTGTTAGGTTTTGATTGGATAACAAATTGTGTT
GAGTTGTCAgtcaaatttttgttatttaaaatCTTTATCGTTTTTGTGAG
TCTAGGTTGTGATACTGCTTGTCGTGGTTGTATGAGACCTGGCATAGGTT
GCAACATGACTGGTCGTGGTTGTCTTAAAGTAGACACAGTTTGTAATACG
ATTGATCGGGGTTGTGAGATATTAGACTTAATTTTTGGGGCGACTGGTCG
TGGTTGTTTTGAAGTAGACGCAGATTGTGATACGATTGATCGGGGTTGAG
AGAGATTAGACGTAATTTGTGGTGCGACTGGCCGTGGTTGTCTGAGAGCA
GGCGTGGCTTGTGATACGTTTGATGGTAGTTGTCTGAGAGCAGACGTAGT
TTGCGATACGACTGGCCGTGGTTGTTCTGCTAGAGGAGTAGATGTGTTTA
GCTGAGGTGAAGAAAGGGAGCCAAATGATAGATCCAATATCTGTGACTGA
GGAATTGATTCAAATAAAGGTGATAGCGAGAGTGGAGTTGATAAAGATAG
TGGACTTCCCAAAGAAATAAGAGACTTCGATGTTGGAGATGACGCCTcaa
ttggttgaaaaatttctaTATTCCGTTTTAGCATGTATTCTGTAGAGTTG
CTGAAACGCTCGGTAGACATCGTGTTTTTTTTGTTCTGTTTTTCGAATTC
AATCAACACATTGCATCCAGTCACCAAACCATATTGATAAATTGCTCGGA
GAagacctgaaaaataaaatcttgattTTAGAATTCTATCCATGCTTGTT
TTCACCA Coding sequence (CDS) from alignment at scaffold_208:368494..369450 >TCONS_00052035 ID=TCONS_00052035|Name=TCONS_00052035|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_208:368494..369450 (Clytia hemisphaerica)
AGAAGCTTTGGCCTTTTTAAGTCCAGATACTCTGGCATTGGATAGTCTTc
ttttcctaattttttctGATGGTGAGTTTTCTTTAAGTGTTTGATCACTC
ATGTGCGTAGAGGCATAGCCGTGTTCGGTAAATGGCATTGGTGGCTTGAA
ACCACTTTCTGTATTTTTGTTAGGTTTTGATTGGATAACAAATTGTGTTG
AGTTGTCAgtcaaatttttgttatttaaaatCTTTATCGTTTTTGTGAGT
CTAGGTTGTGATACTGCTTGTCGTGGTTGTATGAGACCTGGCATAGGTTG
CAACATGACTGGTCGTGGTTGTCTTAAAGTAGACACAGTTTGTAATACGA
TTGATCGGGGTTGTGAGATATTAGACTTAATTTTTGGGGCGACTGGTCGT
GGTTGTTTTGAAGTAGACGCAGATTGTGATACGATTGATCGGGGTTGAGA
GAGATTAGACGTAATTTGTGGTGCGACTGGCCGTGGTTGTCTGAGAGCAG
GCGTGGCTTGTGATACGTTTGATGGTAGTTGTCTGAGAGCAGACGTAGTT
TGCGATACGACTGGCCGTGGTTGTTCTGCTAGAGGAGTAGATGTGTTTAG
CTGAGGTGAAGAAAGGGAGCCAAATGATAGATCCAATATCTGTGACTGAG
GAATTGATTCAAATAAAGGTGATAGCGAGAGTGGAGTTGATAAAGATAGT
GGACTTCCCAAAGAAATAAGAGACTTCGATGTTGGAGATGACGCCTcaat
tggttgaaaaatttctaTATTCCGTTTTAGCATGTATTCTGTAGAGTTGC
TGAAACGCTCGGTAGACATCGTGTTTTTTTTGTTCTGTTTTTCGAATTCA
ATCAACACATTGCATCCAGTCACCAAACCATATTGATAAATTGCTCGGAG
AagacctgaaaaataaaatcttgattTTAGAATTCTATCCATGCTTGTTT
TCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052035-exon-scaffold_208-1491911889:368494..369450 | TCONS_00052035-exon-scaffold_208-1491911889:368494..369450 | Clytia hemisphaerica | exon |
| TCONS_00052035-exon-scaffold_208-1510915933:368494..369450 | TCONS_00052035-exon-scaffold_208-1510915933:368494..369450 | Clytia hemisphaerica | exon |
| TCONS_00052035-exon-scaffold_208-1575043694:368494..369450 | TCONS_00052035-exon-scaffold_208-1575043694:368494..369450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:368494..369450 . |
Blast
The following BLAST results are available for this feature:
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