TCONS_00052040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052040
Unique NameTCONS_00052040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052040 ID=TCONS_00052040|Name=TCONS_00052040|organism=Clytia hemisphaerica|type=transcript|length=464bp
GTCAATTCTTTATAGctgaaataaaaagatatatCAGATAAAGATATATT
ACTGTGTGTACATCTTAAATAGTATATTTTGCAAAGAGTGCCTCGTATAT
TTTCAACAACTTCGATTGAAAGTAAAGGTATTCATTACATGTACAAACCT
AAAGATCACTACTTTATGAAAAGTATGACTTACTCTTTTTATCCCCTAAC
TAGAACAAAAAGGTTTCATCTCCAAAGAAGTGTTAAGTGCAATGCCAAAG
TGTTACTTTCTGCTTGACACATTTAAAACCTTATTATTGATGTCATAAAG
ACAATCGTGACCACTACGTCAAAAGATACCGGCTAACTTTATTGGGAAGG
AACTTTGGTTTTTAATGTTGCTAAAATGTGTAGCCGTATCGATTCATTTA
ATGATCCCCTTTGTAATCTAGCATAAACCATCTCAAAGGGAAAGTATTGT
TGCTCGCAAAAACG
Run BLAST on NCBI

transcript from alignment at scaffold_208:508243..508706

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052040 ID=TCONS_00052040|Name=TCONS_00052040|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_208:508243..508706 (Clytia hemisphaerica)
CGTTTTTGCGAGCAACAATACTTTCCCTTTGAGATGGTTTATGCTAGATT
ACAAAGGGGATCATTAAATGAATCGATACGGCTACACATTTTAGCAACAT
TAAAAACCAAAGTTCCTTCCCAATAAAGTTAGCCGGTATCTTTTGACGTA
GTGGTCACGATTGTCTTTATGACATCAATAATAAGGTTTTAAATGTGTCA
AGCAGAAAGTAACACTTTGGCATTGCACTTAACACTTCTTTGGAGATGAA
ACCTTTTTGTTCTAGTTAGGGGATAAAAAGAGTAAGTCATACTTTTCATA
AAGTAGTGATCTTTAGGTTTGTACATGTAATGAATACCTTTACTTTCAAT
CGAAGTTGTTGAAAATATACGAGGCACTCTTTGCAAAATATACTATTTAA
GATGTACACACAGTAATATATCTTTATCTGatatatctttttatttcagC
TATAAAGAATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032956XLOC_032956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052040-exon-scaffold_208-1491911889:508243..508706TCONS_00052040-exon-scaffold_208-1491911889:508243..508706Clytia hemisphaericaexon
TCONS_00052040-exon-scaffold_208-1510915933:508243..508706TCONS_00052040-exon-scaffold_208-1510915933:508243..508706Clytia hemisphaericaexon
TCONS_00052040-exon-scaffold_208-1575043694:508243..508706TCONS_00052040-exon-scaffold_208-1575043694:508243..508706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:508243..508706 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782758	0.555219	0.20131	0	2.39847	0.889571	2.27306	3.01598	0.304425	0.652202	1.29409	0.439578	0.464923	0.277618	0.538355	0.60391	0.985108	0.377902	0	0.970354	2.88026	1.65414	0.740101	0	0.298752	1.12252	0.877141	0.37445	0.445138	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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