TCONS_00052134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052134
Unique NameTCONS_00052134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052134 ID=TCONS_00052134|Name=TCONS_00052134|organism=Clytia hemisphaerica|type=transcript|length=225bp
AAACTTTTTATGGTCACCTCTTGTTTTTGTAGATCTTCTTTGGTGACTTC
TGcatatgattgtttttttgtttctgtgCTGTTGAGCTGTGTTTCAGATC
GTTTTTTGTTCTGTTCTTTGTTGACGTCTTTTTCATTCATTAGCTTCTCG
ACTTTTCTTTCTAGAGAGGTTATTCTCTCGTTGAAACCTAATTTCAATCC
ATGATGATGTTCATCTTTATCTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_210:20604..20828

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052134 ID=TCONS_00052134|Name=TCONS_00052134|organism=Clytia hemisphaerica|type=transcript|length=225bp|location=Sequence derived from alignment at scaffold_210:20604..20828 (Clytia hemisphaerica)
AGCAGATAAAGATGAACATCATCATGGATTGAAATTAGGTTTCAACGAGA
GAATAACCTCTCTAGAAAGAAAAGTCGAGAAGCTAATGAATGAAAAAGAC
GTCAACAAAGAACAGAACAAAAAACGATCTGAAACACAGCTCAACAGcac
agaaacaaaaaaacaatcatatgCAGAAGTCACCAAAGAAGATCTACAAA
AACAAGAGGTGACCATAAAAAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033014XLOC_033014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052134-exon-scaffold_210-1491911889:20604..20828TCONS_00052134-exon-scaffold_210-1491911889:20604..20828Clytia hemisphaericaexon
TCONS_00052134-exon-scaffold_210-1510915933:20604..20828TCONS_00052134-exon-scaffold_210-1510915933:20604..20828Clytia hemisphaericaexon
TCONS_00052134-exon-scaffold_210-1575043694:20604..20828TCONS_00052134-exon-scaffold_210-1575043694:20604..20828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:20604..20828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9516	6.21703	11.1147	9.04593	4.62715	2.43762	1.47044	0.363723	4.36214	3.58146	2.3175	0.761717	1.52132	4.45082	1.29889	3.31554	1.06486	0	1.21581	1.27226	5.94187	14.5633	0	10.4977	0	0	4.70484	9.37429	3.81516	6.88258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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