Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052137 ID=TCONS_00052137|Name=TCONS_00052137|organism=Clytia hemisphaerica|type=transcript|length=1238bp GTGCTGGATAAAAGTCGTGAAATCTAACAATGATCCCCTTGTTCCGGGAA GTCTTTTTTTACAAACTCTGTAATCAAATTAGGAGTTACTCCGGCGAAAC TAAGAACTGATCTTGGAAATGAAAATGGTATCATGGCAGATTGCCAATGT TTTCTTACACATAATGTAAAATCTCATTCATACGGTTCTTCAGTGGCTAA TCAACGAATTGAAAATTATTGGTCACACCTCAAGAGAATGTACATGGCAT GGGTCATCgacttttttaaagaattggTCGAAAGAGAGTCGTTGGTTTTG GCAAATTACGTACATAAAGAGTgtgtttggtttgttttttcagaattttt acaGATCGAATTGGACAGGCTGACGTTAGAGTGGAATTCACATTACATAA GGGGACAAACTAGAAATGATACCGTGCCAGGGATACCAGATATTTTATTT CATGCTCCAACCATTTCAGGATACGAAAATCAGGGGAATGAATTGATAAA TGAAAGGGTGGAAAATTTGTTAGCCCAAAGGGATATTATTTCAGAAGGAA GAGAGATAATGAATAACATGGATGTAGAACTTGAAGATTATTTTAACTAT GTAATCGAGACAGAAAATTTACCATATACACCTGCAAATTGGCAAGATGC TAAACAGATGTATTTGACAATAATAAACGCTTTCTAACACTTTCTGTATA AAGTATGCATATATTTTACACTAAAAGTATTTCTTCAAAGTTTGGAATAA AAGTAAATAGAATGTTactaagaaaagtttgaattaTTATTCAGCTACAA TTAAAATTTGATTCCTCTAATAGTGCTTTCAGATTTAGATACCTATCTTA AAAATAGACTGACAAAAAGATACTGATACAAGCTCTTCTTATTTCGATAA ATTGATTCCTGgtgaaaattaaacaaaaagacGTTTCTATGAATTAGATC TAANTCTCTTATTTCGATAAATTGATTCCTGgtgaaaatttaacaaaaag acgTTTTTATGGATTAGATCTAAAAGGTAATGACCATATATCAACAAAAC TATAAAGCAATATGAAATACCTGCAGAGTGTCCTATAATAATTACCTTCT TCGCATCTTggagaaatatgattttgtttGTATAAAAAGTGACAAAGACA GTCGTTCGTTTTACAAAAGCTTCTCTCTACCTCATACAATACAATTAAGC GGTCGTTTATAAATAACAAAAATGTTTTCGATCATCAC Run BLAST on NCBI protein sequence of TCONS_00052137-protein >TCONS_00052137-protein ID=TCONS_00052137-protein|Name=TCONS_00052137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MADCQCFLTHNVKSHSYGSSVANQRIENYWSHLKRMYMAWVIDFFKELVE RESLVLANYVHKECVWFVFSEFLQIELDRLTLEWNSHYIRGQTRNDTVPG IPDILFHAPTISGYENQGNELINERVENLLAQRDIISEGREIMNNMDVEL EDYFNYVIETENLPYTPANWQDAKQMYLTIINAF Run BLAST on NCBI transcript from alignment at scaffold_210:34818..36055 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052137 ID=TCONS_00052137|Name=TCONS_00052137|organism=Clytia hemisphaerica|type=transcript|length=1238bp|location=Sequence derived from alignment at scaffold_210:34818..36055 (Clytia hemisphaerica) GTGATGATCGAAAACATTTTTGTTATTTATAAACGACCGCTTAATTGTAT
TGTATGAGGTAGAGAGAAGCTTTTGTAAAACGAACGACTGTCTTTGTCAC
TTTTTATACaaacaaaatcatatttctccAAGATGCGAAGAAGGTAATTA
TTATAGGACACTCTGCAGGTATTTCATATTGCTTTATAGTTTTGTTGATA
TATGGTCATTACCTTTTAGATCTAATCCATAAAAAcgtctttttgttaaa
ttttcacCAGGAATCAATTTATCGAAATAAGAGANTTAGATCTAATTCAT
AGAAACgtctttttgtttaattttcacCAGGAATCAATTTATCGAAATAA
GAAGAGCTTGTATCAGTATCTTTTTGTCAGTCTATTTTTAAGATAGGTAT
CTAAATCTGAAAGCACTATTAGAGGAATCAAATTTTAATTGTAGCTGAAT
AAtaattcaaacttttcttagtAACATTCTATTTACTTTTATTCCAAACT
TTGAAGAAATACTTTTAGTGTAAAATATATGCATACTTTATACAGAAAGT
GTTAGAAAGCGTTTATTATTGTCAAATACATCTGTTTAGCATCTTGCCAA
TTTGCAGGTGTATATGGTAAATTTTCTGTCTCGATTACATAGTTAAAATA
ATCTTCAAGTTCTACATCCATGTTATTCATTATCTCTCTTCCTTCTGAAA
TAATATCCCTTTGGGCTAACAAATTTTCCACCCTTTCATTTATCAATTCA
TTCCCCTGATTTTCGTATCCTGAAATGGTTGGAGCATGAAATAAAATATC
TGGTATCCCTGGCACGGTATCATTTCTAGTTTGTCCCCTTATGTAATGTG
AATTCCACTCTAACGTCAGCCTGTCCAATTCGATCtgtaaaaattctgaa
aaaacaaaccaaacacACTCTTTATGTACGTAATTTGCCAAAACCAACGA
CTCTCTTTCGAccaattctttaaaaaagtcGATGACCCATGCCATGTACA
TTCTCTTGAGGTGTGACCAATAATTTTCAATTCGTTGATTAGCCACTGAA
GAACCGTATGAATGAGATTTTACATTATGTGTAAGAAAACATTGGCAATC
TGCCATGATACCATTTTCATTTCCAAGATCAGTTCTTAGTTTCGCCGGAG
TAACTCCTAATTTGATTACAGAGTTTGTAAAAAAAGACTTCCCGGAACAA
GGGGATCATTGTTAGATTTCACGACTTTTATCCAGCAC Coding sequence (CDS) from alignment at scaffold_210:34818..36055 >TCONS_00052137 ID=TCONS_00052137|Name=TCONS_00052137|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_210:34818..36055 (Clytia hemisphaerica) TTAGAAAGCGTTTATTATTGTCAAATACATCTGTTTAGCATCTTGCCAAT TTGCAGGTGTATATGGTAAATTTTCTGTCTCGATTACATAGTTAAAATAA TCTTCAAGTTCTACATCCATGTTATTCATTATCTCTCTTCCTTCTGAAAT AATATCCCTTTGGGCTAACAAATTTTCCACCCTTTCATTTATCAATTCAT TCCCCTGATTTTCGTATCCTGAAATGGTTGGAGCATGAAATAAAATATCT GGTATCCCTGGCACGGTATCATTTCTAGTTTGTCCCCTTATGTAATGTGA ATTCCACTCTAACGTCAGCCTGTCCAATTCGATCtgtaaaaattctgaaa aaacaaaccaaacacACTCTTTATGTACGTAATTTGCCAAAACCAACGAC TCTCTTTCGAccaattctttaaaaaagtcGATGACCCATGCCATGTACAT TCTCTTGAGGTGTGACCAATAATTTTCAATTCGTTGATTAGCCACTGAAG AACCGTATGAATGAGATTTTACATTATGTGTAAGAAAACATTGGCAATCT GCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052137-exon-scaffold_210-1491911889:34818..36055 | TCONS_00052137-exon-scaffold_210-1491911889:34818..36055 | Clytia hemisphaerica | exon |
TCONS_00052137-exon-scaffold_210-1510915933:34818..36055 | TCONS_00052137-exon-scaffold_210-1510915933:34818..36055 | Clytia hemisphaerica | exon |
TCONS_00052137-exon-scaffold_210-1575043694:34818..36055 | TCONS_00052137-exon-scaffold_210-1575043694:34818..36055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_210 | supercontig | scaffold_210:34818..36055 . |
Blast
The following BLAST results are available for this feature:
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