TCONS_00052128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052128
Unique NameTCONS_00052128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052128 ID=TCONS_00052128|Name=TCONS_00052128|organism=Clytia hemisphaerica|type=transcript|length=970bp
CAGGTCgattagaataaaaaaatagaataagATAATGGAATAACTGTACC
cgtatcaaaatcaaaatggcaaCCAGGCTTGATCGTCTGCTTGTTATCCT
TGATACAGGCTCGACACCTGTCACCAGGAAAGCTGCTGCAAAACAACTTG
GGGAAATTCAGAAGCTACATCCACATGAACTCCAGAACCTCCTGGGGAGA
GTCTTTGTGTACTTACGAAGCAAGAATTGGGATACGAGAGTTGCAGCTGC
CCATGCAATACAAGCTATTGCAGAAAACGTCCCTGAGTGGAATCCTGACG
GCTTGAAAATCAAACCCGAAGGTGACTTNGCAGAAAACGTCCCTGAGTGG
AATCCTGACGGCTTGAAAATCAAACCTGAAgaATACTGTTTACTAGAAAA
CGTCAACCTTGATGGCAAACTACGTTTCGAAGATTTTGACATCAACACAG
TTCTGGAGCGCGgagaaaaacttcttggatcGGCGGGCGAAGAATATGAT
TTCGAAGATACTATACTTTCAGGTATGTCTCGATCGGAGACCATTGCACA
CCAACGTCAACAATTGAAGAAGAAACTGGGTTTTGGTGGAAACATGGATT
TGGGATTCGATTCGATGTTGGATGATGAAGATCTGGTCACCACGAATAAC
GTTGGTGATGGTGGTGGAAGTAAAAAAGTCATGTCGCAGTTATCGACTGA
GAGTGCAGCGGACATTGTGGCATCGCAAATAGCAGCGATTTCATCAGATG
GCCAGATGAGTTCCAGAGAGAAGAACCGTGCCAAAAGAAAAGCCAAGTCC
TTGGCCAAACAAAgatcaaaagaaaatgaaaacagaaGTTTTGACACTGG
TGAAGGTCCGGCAGAGAAGAAGCAGCGACGGACACAAAGTGTGTTAGTGG
AACAACCAAGCGAAGATGGAAAGATCATGATCGATAATGTGTCGGACGGT
ACCATGAGTATGGACGAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_210:190877..195394-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052128 ID=TCONS_00052128|Name=TCONS_00052128|organism=Clytia hemisphaerica|type=transcript|length=4518bp|location=Sequence derived from alignment at scaffold_210:190877..195394- (Clytia hemisphaerica)
CAGGTCGATTAGAATAAAAAAATAGAATAAGATAATGGAATAACTGTACC
CGTATCAAAATCAAAATGGCAACCAGGTTAGCATCTTTTATTTTATCAAC
ATTTCAGAGTATTTCTGTTGTTTTAATCATACTTTCGTAGCTCATTTACT
TTTATAATACAATTGAGTCTTATTGGGACAAAGAAACACGAAAAATACTC
CAATCAAAAGAAGGAAATGAGTTTATACCAGCCATGGTATATTCTATCAA
AGTGGAATTGAATTACAAATCTAAATGGAATTCTTCTCTACAATTTTAGG
CTTGATCGTCTGCTTGTTATCCTTGATACAGGCTCGACACCTGTCACCAG
GAAAGCTGCTGCAAAACAACTTGGGGAAATTCAGAAGCTACATCCACATG
AACTCCAGAACCTCCTGGGGAGAGTAAGAACCTTTCATTGTTATAGATTT
TGCAAACCACACTTAATTCTCATTCTATTTCAATCATTGGTCAAAATGGG
ATTGTTGGAATGCCTTCATTGCGTCCCTCACATGACTTAAGGTTTAATCT
CAAAATTCATACCTTATGAAATTTAGAGTTTTACTGTGGTGGTCATCTTT
GAGATTGAGATTGCCCTTTTTTTCATGTAGAGGAATAGTCGATGTTTTCA
TATGACAAAAAGGCCAATCTCAAAGGCAGAACAGGATTGCAAGATTTCCA
ATTTTCCAAGACACTTATTTTGAGATTGAACCTTTAGTCATGTGAGGGAC
GATTGATTATGCGCTATTTTCAGATCCATTTTCTTAATTTTGTCTGTGAA
AACCTTGCTATCTTTATAACAAACAACAAACCTTTTAAAGACATTTCAAT
AATTTGTATTTTGAAAATTCACATACGAAGCATTATAACTGGAGAGTCTG
CTATATCAATTTAATTCTTGTTATGATCAGGTCTTTGTGTACTTACGAAG
CAAGAATTGGGATACGAGAGTTGCAGCTGCCCATGCAATACAAGCTATTG
CAGAAAACGTCCCTGAGTGGAATCCTGACGGCTTGAAAATCAAACCCGAA
GGTGACTTNGCAGAAAACGTCCCTGAGTGGAATCCTGACGGCTTGAAAAT
CAAACCTGAAGGTGACTTTTTAAATTTATTTTTACAGTTATTTGATTGAA
ATAAACTTGTTTCTACATTGGATAATACTAGGTCTGTTCGCTTACACTTT
CTTTTCTTTTATAAGAAGAACGAGCCTCAAAATCGCCAAAAATAAGAACA
ATTTAAGAACAATGCTATAAAGCCTAAAATAACTCCATTTCAAGCAATTT
AGGGGTCAAAGTAGTAAAAATTGGGGTCAACGTCTAAAATACCTCAATTA
CACCCTATAGAATAAGAACAGGGTATAAAGATCCCTCAAAAGTTTATCTT
TCCTCTTTCCAATGCAAAGGATTGATTCTTTCACAGTTCATAGAACTCGA
GAAAATTCACTTCAAAGAGGGGGACTTCTGGGACACCCGGTAGTAAAGGC
ACATACGTCAGTCAAAAATTCTTTGCTTGTCTGGCTTTTGTATTGATTCA
GCACGTGAACAAAATACAGAACGGATGGGATGTATAATTAGCTTAGTTCT
GTATTTTGTTGATGTTCTTGATTACAACCAAGCATAACCAACTATCCAAT
AGCCCATTTCTATTCGCTACAACTTACAATATAAACGAAGTTGTTTCAAA
ATAACACACCATACGATACCTTACAGTACATTACAAACAGCATTTGATAC
TGAATGACAATCGAAATGTTTCTCTTTTAGAATACTGTTTACTAGAAAAC
GTCAACCTTGATGGCAAACTACGTTTCGAAGATTTTGACATCAACACAGT
TCTGGAGCGCGGAGAAAAACTTCTTGGATCGGCGGGCGAAGAATATGATT
TCGAAGATACTATACTTTCAGGTAAGGCAGGCAGCATTGAAGGTTAAATC
AAAAGATGAATGTGATAAATTCCATCGGCAAGTGCTCTTTGATTCCTTCT
TGTCAATTAATCCAAATTGATCCGTTGTCTTTTGTAAGCCTTTCAACGCT
AATAAAATCTAGTTTTTTTTGAGGGGGTTTCTACGTTTCTACGTTTTATG
AAATGTTTGTTTTAGTATTTTTAAAGTGGTACTCATGTAGTTCTTGAATC
TGAAATACCCAAATTTACCTAATTTGCTTCTAAATTCTTTAAGCTCTATC
TCTGGTATACAGTCTGTCTAAGGTGACCCGAACGCTTGTCCTCTTCTTGT
TGAACCTGCCAGGTAAATTTAAGCTGGCACTGTTTGTTATCAAAAGAGTT
TTAGAATATGCTATAGGTTGGAAAAAAGTGGCTGGGAGGTCTGGGGGCAC
TGGTTGACCAGGTGGTCCAGGGCAGAGTCATGTTTGAAGTTAAGGTAGCA
AAGCCCTTAGAAAATATGACTTTGTTGTAGAATTAAGTGCTAAAATATTG
AATTCTTCAAGACTTTCTTTACCTTTTGCCTTTTTTCGCAGCTATTTTTT
TTGCTGAAGATTAAGTTGACAACTCGATTGAGTTTTTGCTACCATTATCC
GGTAGCAGAAAATTCCTGGAAATATGCCTGCCCACCACCTTTGTGCACCG
TAGCAGGATGCTCTACTTTCATAATACTACAGCAGCTTTATACACTCTGG
GAATCAATCACACTCTGAGTTTACATGTGATATTCAAACTACGAATATTT
AGGTATGTCTCGATCGGAGACCATTGCACACCAACGTCAACAATTGAAGA
AGAAACTGGGTTTTGGTGGAAACATGGATTTGGGATTCGATTCGATGTTG
GATGATGAAGATCTGGTCACCACGAATAACGTTGGTGATGGTGGTGGAAG
TAAAAAAGTCATGTCGCAGTTATCGACTGAGGTATGAGATACTCTCATCT
CTATCTTGAAAGTATTTTGAATTATCAGATCTATTCACTTAAATTACTCT
ATATTTACTATCCAGCGAATAAGCATACCTCTTAGGACAAGTCACGTCAT
TCTCGCGAGAATTCATAAATTTTTGCATCTTTTGCTAGTTGAATTTCTGT
CAGTATTTGAAACTACGGTGTTTGTCTAAAGCCTTTGGTTAACTTAAGAA
AAAATGTGGAAAAAAAGTTAAACCCTTCAAGCCTGTACTCCTCGTTTGCC
TCTGCCATTTTCAAAACGATTTTCTCATCTAAAATCAATAGTTTGCGACT
CCTGTTATACCGGTTAAGAGACAGAGGTGTACGCTTCAGAAAGATTCCCA
TTCAAGACTCGTTTGCTTCAGTTTGTTCGCTTGATATTTCTTTCCTTAAA
AAATTACACGGATTCAAAGTTGAAATACAGTTGATTCTCTCTAATTCAAT
CTTCAAGGGACCAAAAATTTCCTTCGAATTAGAGAAAGATTCGGATTATG
GAGAGTATCTTATACGATGTTCCAGATGAGGCGACCAATGTTTTAGTTTG
AATTACAGAAAAATTTAACAATAGGATTTTGATTTAGAGAAGGTTGACTG
TAGAAATGATTTTGAAAGACTTTTTTACTTTAGAGTGCAGCGGACATTGT
GGCATCGCAAATAGCAGCGATTTCATCAGATGGCCAGATGAGTTCCAGAG
AGAAGAACCGTGCCAAAAGAAAAGCCAAGTCCTTGGCCAAACAAAGATCA
AAAGAAAATGAAAACAGAAGGTAGGTGATTCCTGTGCCAAGGCTACCGTG
GATTTTACATATTTTGATTATTAAAGGGGTTGGTACGAACTTAAATCCAT
ACACTGATATGTTTTTCCTGATGAGTTTGTTAGTTTCTCTATGACCAAAG
ATGTGACTGGTAGTGGTTAATAAATCTTTCTACCAATAAATTTTCCAGCT
CTTTAAATATCTAAAAAATTCCCAGCTCAGCCAAATTACTAATGAATTTC
CAGCTCAGCCAAATTACTAATAATTACTAATAAATTCCACCGCTTTAGGT
TCTAAAGGATGTCTGACTGCCCCTGAATTAGATGGTTTCTTTATATTTAA
CCTACAGCACTACCTTAAACTATGATTATATGAAAAACACTTCTGAAATT
TTTCGTTTACCAAATTTTTAGATCTTTTCTCTCATTCCATATCAAATTCA
ACATAACGGCTGTGTATCGAGACTGGTGTATAAAGACTTTTTTTAGAAAT
TTCAAATTGAAGTAATATAACAGGGTTGAAAAAAATTGTAGGTGTTGCTT
ACTGACGACCATAGAAGGTATTGTGTAGATTGAGTATCAACAGGTACATG
AGATTATATCACTTTTAAGTAATTTGATTATCTATATTAGTTTTGACACT
GGTGAATGTCCGGCAGAGTAGAAATTTAATCCCCGCGAAAATTTATCCCA
TTAAAGTATCGCTTTTAATCTGATAATCTCTTTTAGTTTTGACACTGGTG
AAGGTCCGGCAGAGAAGAAGCAGCGACGGACACAAAGTGTGTTAGTGGAA
CAACCAAGCGAAGATGGAAAGATCATGATCGATAATGTGTCGGACGGTAC
CATGAGTATGGACGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033011XLOC_033011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052128-exon-scaffold_210-1575043694:195319..195394TCONS_00052128-exon-scaffold_210-1575043694:195319..195394Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1575043694:194972..195095TCONS_00052128-exon-scaffold_210-1575043694:194972..195095Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1575043694:194284..194464TCONS_00052128-exon-scaffold_210-1575043694:194284..194464Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1575043694:193474..193614TCONS_00052128-exon-scaffold_210-1575043694:193474..193614Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1575043694:192514..192692TCONS_00052128-exon-scaffold_210-1575043694:192514..192692Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1575043694:191725..191861TCONS_00052128-exon-scaffold_210-1575043694:191725..191861Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1575043694:190877..191008TCONS_00052128-exon-scaffold_210-1575043694:190877..191008Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:195319..195394TCONS_00052128-exon-scaffold_210-1510915933:195319..195394Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:194972..195095TCONS_00052128-exon-scaffold_210-1510915933:194972..195095Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:194284..194464TCONS_00052128-exon-scaffold_210-1510915933:194284..194464Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:193474..193614TCONS_00052128-exon-scaffold_210-1510915933:193474..193614Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:192514..192692TCONS_00052128-exon-scaffold_210-1510915933:192514..192692Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:191725..191861TCONS_00052128-exon-scaffold_210-1510915933:191725..191861Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1510915933:190877..191008TCONS_00052128-exon-scaffold_210-1510915933:190877..191008Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:195319..195394TCONS_00052128-exon-scaffold_210-1491911889:195319..195394Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:194972..195095TCONS_00052128-exon-scaffold_210-1491911889:194972..195095Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:194284..194464TCONS_00052128-exon-scaffold_210-1491911889:194284..194464Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:193474..193614TCONS_00052128-exon-scaffold_210-1491911889:193474..193614Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:192514..192692TCONS_00052128-exon-scaffold_210-1491911889:192514..192692Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:191725..191861TCONS_00052128-exon-scaffold_210-1491911889:191725..191861Clytia hemisphaericaexon
TCONS_00052128-exon-scaffold_210-1491911889:190877..191008TCONS_00052128-exon-scaffold_210-1491911889:190877..191008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:190877..195394 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.55264	0	0.356249	11.4041	7.49316	6.83303	7.18434	1.681	7.12647	4.08531	2.52053	3.75093	3.5253	1.98498	2.34015	4.43779	4.13802	2.50476	0	0.743958	0.00232815	0.669652	1.51889	9.24315	12.5706	0	0	3.33996	0.079119
Blast
[Close]
BLAST of TCONS_00052128 vs. Swiss-Prot (Human)
Match: BTAF1 (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 2.105e-57
Identity = 126/305 (41.31%), Postives = 184/305 (60.33%), Query Frame = 3 
Query:   69 ATRLDRLLVILDTGSTPVTRKAAAKQLGEIQKLHPHELQNLLGRVFVYLRSKNWDTRVXXXXXXXXXXENVPEWNPDGLKIKPEGDXAENVPEWNPDGLKIKPEEYCLLENVNLDGKLRFEDFDINTVLERGEKLLGSAGEEYDFEDTILSGMSRSETIAHQRQQLKKKLGF--GGNMDLGFDSMLDDEDLVTTNNVGDGGGSKKVMSQLSTESAADIVASQIAAISSDGQMSSREKNRAKRKAKSLAKQRSK---ENENRSFDTGEGPAEKKQRRTQSVLVEQPSEDGKIMIDNVSDGTMSMDE 968
             +RLDRL ++LDTG+TPVTRKAAA+QLGE+ KLHPHEL NLL +V +YLRS NWDTR+AA  A++AI +NVPEWNP              VP       + +P     +E+     +L F+ FDI  +L+ G  LLGSAG E++ +D     +   E IA QR+ L+KKLG   G  + +  + + +DEDL  T        S   +++  T  AA+++ S+  A      MS+R+KN+AKR AK  AKQRS+   E   +S D+ +G  E+K+R+  +V++ Q + D K++IDN+ D +  ++E
Sbjct:    3 VSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAGQAVEAIVKNVPEWNP--------------VPR-----TRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPT------SASFVNKQPTLQAAELIDSEFRA-----GMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDGEPEEKRRKIANVVINQSANDSKVLIDNIPDSSSLIEE 277
The following BLAST results are available for this feature:
BLAST of TCONS_00052128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BTAF12.105e-5741.31TATA-binding protein-associated factor 172 OS=Homo... [more]
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