TCONS_00052130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052130
Unique NameTCONS_00052130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052130 ID=TCONS_00052130|Name=TCONS_00052130|organism=Clytia hemisphaerica|type=transcript|length=851bp
GGTCgattagaataaaaaaatagaataagATAATGGAATAACTGTACCcg
tatcaaaatcaaaatggcaaCCAGGCTTGATCGTCTGCTTGTTATCCTTG
ATACAGGCTCGACACCTGTCACCAGGAAAGCTGCTGCAAAACAACTTGGG
GAAATTCAGAAGCTACATCCACATGAACTCCAGAACCTCCTGGGGAGAGT
CTTTGTGTACTTACGAAGCAAGAATTGGGATACGAGAGTTGCAGCTGCCC
ATGCAATACAAGCTATTGCAGAAAACGTCCCTGAGTGGAATCCTGACGGC
TTGAAAATCAAACCCGAAGGTGACTTNGCAGAAAACGTCCCTGAGTGGAA
TCCTGACGGCTTGAAAATCAAACCTGAAgaATACTGTTTACTAGAAAACG
TCAACCTTGATGGCAAACTACGTTTCGAAGATTTTGACATCAACACAGTT
CTGGAGCGCGgagaaaaacttcttggatcGGCGGGCGAAGAATATGATTT
CGAAGATACTATACTTTCAGGTATGTCTCGATCGGAGACCATTGCACACC
AACGTCAACAATTGAAGAAGAAACTGGGTTTTGGTGGAAACATGGATTTG
GGATTCGATTCGATGTTGGATGATGAAGATCTGGTCACCACGAATAACGT
TGGTGATGGTGGTGGAAGTAAAAAAGTCATGTCGCAGTTATCGACTGAGA
GTGCAGCGGACATTGTGGCATCGCAAATAGCAGCGATTTCATCAGATGGC
CAGATGAGTTCCAGAGAGAAGAACCGTGCCAAAAGAAAAGCCAAGTCCTT
GGCCAAACAAAgatcaaaagaaaatgaaaacagaaGTTTTGACACTGGTG
A
Run BLAST on NCBI

transcript from alignment at scaffold_210:191090..195392-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052130 ID=TCONS_00052130|Name=TCONS_00052130|organism=Clytia hemisphaerica|type=transcript|length=4303bp|location=Sequence derived from alignment at scaffold_210:191090..195392- (Clytia hemisphaerica)
GGTCGATTAGAATAAAAAAATAGAATAAGATAATGGAATAACTGTACCCG
TATCAAAATCAAAATGGCAACCAGGTTAGCATCTTTTATTTTATCAACAT
TTCAGAGTATTTCTGTTGTTTTAATCATACTTTCGTAGCTCATTTACTTT
TATAATACAATTGAGTCTTATTGGGACAAAGAAACACGAAAAATACTCCA
ATCAAAAGAAGGAAATGAGTTTATACCAGCCATGGTATATTCTATCAAAG
TGGAATTGAATTACAAATCTAAATGGAATTCTTCTCTACAATTTTAGGCT
TGATCGTCTGCTTGTTATCCTTGATACAGGCTCGACACCTGTCACCAGGA
AAGCTGCTGCAAAACAACTTGGGGAAATTCAGAAGCTACATCCACATGAA
CTCCAGAACCTCCTGGGGAGAGTAAGAACCTTTCATTGTTATAGATTTTG
CAAACCACACTTAATTCTCATTCTATTTCAATCATTGGTCAAAATGGGAT
TGTTGGAATGCCTTCATTGCGTCCCTCACATGACTTAAGGTTTAATCTCA
AAATTCATACCTTATGAAATTTAGAGTTTTACTGTGGTGGTCATCTTTGA
GATTGAGATTGCCCTTTTTTTCATGTAGAGGAATAGTCGATGTTTTCATA
TGACAAAAAGGCCAATCTCAAAGGCAGAACAGGATTGCAAGATTTCCAAT
TTTCCAAGACACTTATTTTGAGATTGAACCTTTAGTCATGTGAGGGACGA
TTGATTATGCGCTATTTTCAGATCCATTTTCTTAATTTTGTCTGTGAAAA
CCTTGCTATCTTTATAACAAACAACAAACCTTTTAAAGACATTTCAATAA
TTTGTATTTTGAAAATTCACATACGAAGCATTATAACTGGAGAGTCTGCT
ATATCAATTTAATTCTTGTTATGATCAGGTCTTTGTGTACTTACGAAGCA
AGAATTGGGATACGAGAGTTGCAGCTGCCCATGCAATACAAGCTATTGCA
GAAAACGTCCCTGAGTGGAATCCTGACGGCTTGAAAATCAAACCCGAAGG
TGACTTNGCAGAAAACGTCCCTGAGTGGAATCCTGACGGCTTGAAAATCA
AACCTGAAGGTGACTTTTTAAATTTATTTTTACAGTTATTTGATTGAAAT
AAACTTGTTTCTACATTGGATAATACTAGGTCTGTTCGCTTACACTTTCT
TTTCTTTTATAAGAAGAACGAGCCTCAAAATCGCCAAAAATAAGAACAAT
TTAAGAACAATGCTATAAAGCCTAAAATAACTCCATTTCAAGCAATTTAG
GGGTCAAAGTAGTAAAAATTGGGGTCAACGTCTAAAATACCTCAATTACA
CCCTATAGAATAAGAACAGGGTATAAAGATCCCTCAAAAGTTTATCTTTC
CTCTTTCCAATGCAAAGGATTGATTCTTTCACAGTTCATAGAACTCGAGA
AAATTCACTTCAAAGAGGGGGACTTCTGGGACACCCGGTAGTAAAGGCAC
ATACGTCAGTCAAAAATTCTTTGCTTGTCTGGCTTTTGTATTGATTCAGC
ACGTGAACAAAATACAGAACGGATGGGATGTATAATTAGCTTAGTTCTGT
ATTTTGTTGATGTTCTTGATTACAACCAAGCATAACCAACTATCCAATAG
CCCATTTCTATTCGCTACAACTTACAATATAAACGAAGTTGTTTCAAAAT
AACACACCATACGATACCTTACAGTACATTACAAACAGCATTTGATACTG
AATGACAATCGAAATGTTTCTCTTTTAGAATACTGTTTACTAGAAAACGT
CAACCTTGATGGCAAACTACGTTTCGAAGATTTTGACATCAACACAGTTC
TGGAGCGCGGAGAAAAACTTCTTGGATCGGCGGGCGAAGAATATGATTTC
GAAGATACTATACTTTCAGGTAAGGCAGGCAGCATTGAAGGTTAAATCAA
AAGATGAATGTGATAAATTCCATCGGCAAGTGCTCTTTGATTCCTTCTTG
TCAATTAATCCAAATTGATCCGTTGTCTTTTGTAAGCCTTTCAACGCTAA
TAAAATCTAGTTTTTTTTGAGGGGGTTTCTACGTTTCTACGTTTTATGAA
ATGTTTGTTTTAGTATTTTTAAAGTGGTACTCATGTAGTTCTTGAATCTG
AAATACCCAAATTTACCTAATTTGCTTCTAAATTCTTTAAGCTCTATCTC
TGGTATACAGTCTGTCTAAGGTGACCCGAACGCTTGTCCTCTTCTTGTTG
AACCTGCCAGGTAAATTTAAGCTGGCACTGTTTGTTATCAAAAGAGTTTT
AGAATATGCTATAGGTTGGAAAAAAGTGGCTGGGAGGTCTGGGGGCACTG
GTTGACCAGGTGGTCCAGGGCAGAGTCATGTTTGAAGTTAAGGTAGCAAA
GCCCTTAGAAAATATGACTTTGTTGTAGAATTAAGTGCTAAAATATTGAA
TTCTTCAAGACTTTCTTTACCTTTTGCCTTTTTTCGCAGCTATTTTTTTT
GCTGAAGATTAAGTTGACAACTCGATTGAGTTTTTGCTACCATTATCCGG
TAGCAGAAAATTCCTGGAAATATGCCTGCCCACCACCTTTGTGCACCGTA
GCAGGATGCTCTACTTTCATAATACTACAGCAGCTTTATACACTCTGGGA
ATCAATCACACTCTGAGTTTACATGTGATATTCAAACTACGAATATTTAG
GTATGTCTCGATCGGAGACCATTGCACACCAACGTCAACAATTGAAGAAG
AAACTGGGTTTTGGTGGAAACATGGATTTGGGATTCGATTCGATGTTGGA
TGATGAAGATCTGGTCACCACGAATAACGTTGGTGATGGTGGTGGAAGTA
AAAAAGTCATGTCGCAGTTATCGACTGAGGTATGAGATACTCTCATCTCT
ATCTTGAAAGTATTTTGAATTATCAGATCTATTCACTTAAATTACTCTAT
ATTTACTATCCAGCGAATAAGCATACCTCTTAGGACAAGTCACGTCATTC
TCGCGAGAATTCATAAATTTTTGCATCTTTTGCTAGTTGAATTTCTGTCA
GTATTTGAAACTACGGTGTTTGTCTAAAGCCTTTGGTTAACTTAAGAAAA
AATGTGGAAAAAAAGTTAAACCCTTCAAGCCTGTACTCCTCGTTTGCCTC
TGCCATTTTCAAAACGATTTTCTCATCTAAAATCAATAGTTTGCGACTCC
TGTTATACCGGTTAAGAGACAGAGGTGTACGCTTCAGAAAGATTCCCATT
CAAGACTCGTTTGCTTCAGTTTGTTCGCTTGATATTTCTTTCCTTAAAAA
ATTACACGGATTCAAAGTTGAAATACAGTTGATTCTCTCTAATTCAATCT
TCAAGGGACCAAAAATTTCCTTCGAATTAGAGAAAGATTCGGATTATGGA
GAGTATCTTATACGATGTTCCAGATGAGGCGACCAATGTTTTAGTTTGAA
TTACAGAAAAATTTAACAATAGGATTTTGATTTAGAGAAGGTTGACTGTA
GAAATGATTTTGAAAGACTTTTTTACTTTAGAGTGCAGCGGACATTGTGG
CATCGCAAATAGCAGCGATTTCATCAGATGGCCAGATGAGTTCCAGAGAG
AAGAACCGTGCCAAAAGAAAAGCCAAGTCCTTGGCCAAACAAAGATCAAA
AGAAAATGAAAACAGAAGGTAGGTGATTCCTGTGCCAAGGCTACCGTGGA
TTTTACATATTTTGATTATTAAAGGGGTTGGTACGAACTTAAATCCATAC
ACTGATATGTTTTTCCTGATGAGTTTGTTAGTTTCTCTATGACCAAAGAT
GTGACTGGTAGTGGTTAATAAATCTTTCTACCAATAAATTTTCCAGCTCT
TTAAATATCTAAAAAATTCCCAGCTCAGCCAAATTACTAATGAATTTCCA
GCTCAGCCAAATTACTAATAATTACTAATAAATTCCACCGCTTTAGGTTC
TAAAGGATGTCTGACTGCCCCTGAATTAGATGGTTTCTTTATATTTAACC
TACAGCACTACCTTAAACTATGATTATATGAAAAACACTTCTGAAATTTT
TCGTTTACCAAATTTTTAGATCTTTTCTCTCATTCCATATCAAATTCAAC
ATAACGGCTGTGTATCGAGACTGGTGTATAAAGACTTTTTTTAGAAATTT
CAAATTGAAGTAATATAACAGGGTTGAAAAAAATTGTAGGTGTTGCTTAC
TGACGACCATAGAAGGTATTGTGTAGATTGAGTATCAACAGGTACATGAG
ATTATATCACTTTTAAGTAATTTGATTATCTATATTAGTTTTGACACTGG
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033011XLOC_033011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052130-exon-scaffold_210-1575043694:195319..195392TCONS_00052130-exon-scaffold_210-1575043694:195319..195392Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1575043694:194972..195095TCONS_00052130-exon-scaffold_210-1575043694:194972..195095Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1575043694:194284..194464TCONS_00052130-exon-scaffold_210-1575043694:194284..194464Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1575043694:193474..193614TCONS_00052130-exon-scaffold_210-1575043694:193474..193614Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1575043694:192514..192692TCONS_00052130-exon-scaffold_210-1575043694:192514..192692Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1575043694:191725..191861TCONS_00052130-exon-scaffold_210-1575043694:191725..191861Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1575043694:191090..191104TCONS_00052130-exon-scaffold_210-1575043694:191090..191104Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:195319..195392TCONS_00052130-exon-scaffold_210-1510915933:195319..195392Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:194972..195095TCONS_00052130-exon-scaffold_210-1510915933:194972..195095Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:194284..194464TCONS_00052130-exon-scaffold_210-1510915933:194284..194464Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:193474..193614TCONS_00052130-exon-scaffold_210-1510915933:193474..193614Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:192514..192692TCONS_00052130-exon-scaffold_210-1510915933:192514..192692Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:191725..191861TCONS_00052130-exon-scaffold_210-1510915933:191725..191861Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1510915933:191090..191104TCONS_00052130-exon-scaffold_210-1510915933:191090..191104Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:195319..195392TCONS_00052130-exon-scaffold_210-1491911889:195319..195392Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:194972..195095TCONS_00052130-exon-scaffold_210-1491911889:194972..195095Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:194284..194464TCONS_00052130-exon-scaffold_210-1491911889:194284..194464Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:193474..193614TCONS_00052130-exon-scaffold_210-1491911889:193474..193614Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:192514..192692TCONS_00052130-exon-scaffold_210-1491911889:192514..192692Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:191725..191861TCONS_00052130-exon-scaffold_210-1491911889:191725..191861Clytia hemisphaericaexon
TCONS_00052130-exon-scaffold_210-1491911889:191090..191104TCONS_00052130-exon-scaffold_210-1491911889:191090..191104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:191090..195392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.573396	0	0.0868743	0.106029	8.71585e-06	5.72363e-09	0.00192219	0.852855	0	8.27088e-06	0	0.598898	0	1.47632	0.910073	0.0186473	0	0	0	0	0	1.46781
Blast
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BLAST of TCONS_00052130 vs. Swiss-Prot (Human)
Match: BTAF1 (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.456e-48
Identity = 110/254 (43.31%), Postives = 153/254 (60.24%), Query Frame = 1 
Query:   67 ATRLDRLLVILDTGSTPVTRKAAAKQLGEIQKLHPHELQNLLGRVFVYLRSKNWDTRVXXXXXXXXXXENVPEWNPDGLKIKPEGDXAENVPEWNPDGLKIKPEEYCLLENVNLDGKLRFEDFDINTVLERGEKLLGSAGEEYDFEDTILSGMSRSETIAHQRQQLKKKLGF--GGNMDLGFDSMLDDEDLVTTNNVGDGGGSKKVMSQLSTESAADIVASQIAAISSDGQMSSREKNRAKRKAKSLAKQRSKE 822
             +RLDRL ++LDTG+TPVTRKAAA+QLGE+ KLHPHEL NLL +V +YLRS NWDTR+AA  A++AI +NVPEWNP              VP       + +P     +E+     +L F+ FDI  +L+ G  LLGSAG E++ +D     +   E IA QR+ L+KKLG   G  + +  + + +DEDL  T        S   +++  T  AA+++ S+  A      MS+R+KN+AKR AK  AKQRS++
Sbjct:    3 VSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAGQAVEAIVKNVPEWNP--------------VPR-----TRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPT------SASFVNKQPTLQAAELIDSEFRA-----GMSNRQKNKAKRMAKLFAKQRSRD 226
The following BLAST results are available for this feature:
BLAST of TCONS_00052130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BTAF12.456e-4843.31TATA-binding protein-associated factor 172 OS=Homo... [more]
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