Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052168 ID=TCONS_00052168|Name=TCONS_00052168|organism=Clytia hemisphaerica|type=transcript|length=879bp ACATGGCTCAATAATCGAACCAACGCAAAGTTCGCCAAGAAATGCTGCTC TGCATATCTTCAAATCAAACGAAACTTCAACTTCAAAATGGAGACTCGGC AATACGTTTTTCTATCGTCAAACAAACGATACAAGAATTTTAGAATCGAT AACAGATTTCTTTAGAACGAACGCGTCTGTCgagtttaagcctaaaagtg cAGTTATTATCACAGCGGCGCCAGTGTTTTCAGACGTTTATCAGATAGTT TTGGCGAGTAACGATTCAATGACATATGCTTTGATCAACTTCAATCATAT TGGAACAGACGATGCTGGCATgtTTGGTTTACATAATCCTTACTGTCAAC AGAACAGATTCCAAAGCATGTTCAAGACTTCCATTGAATTGACAAGAAAC AACAGTCGGCAGATCACAAATACTGAAGCAAGTGGTTTATGGTTATTTGT AATGGTTGATTCTTATTGCGAAAGAGCGAAGCAAAGTACAAGGGCGCCTG TCCCAACACACCCTTCACGCCCACCTCACAGATCAACAACTCAAAGAGGT ACTAATGGCTATTCAGTGCCACCAAGAATTACAAAGATCACTCGACCTGG ATTAACACGAGGAAAGAAAATCGATGGAAAGCCACATGAAAATGAAGGCT CTAGCAAAGTTAACAATATGGGAATAATCATCGGAGCGAGCGTTGGTATA CCTACACTGTTTATCATATGTATTATGGTCTTTGTTATATACCTTCGACG TAAACAACCCAATCCCATGGCAACCAATGACGTGTCATTCAAGAATGGAA ATGTTCATGTGCAAGCGTAAAATTTGTAGACTCAGTGTCACAGTAAAAGT AGCTGTTTTTGATTCAAGTTTTTTTATGG Run BLAST on NCBI protein sequence of TCONS_00052168-protein >TCONS_00052168-protein ID=TCONS_00052168-protein|Name=TCONS_00052168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
HGSIIEPTQSSPRNAALHIFKSNETSTSKWRLGNTFFYRQTNDTRILESI TDFFRTNASVEFKPKSAVIITAAPVFSDVYQIVLASNDSMTYALINFNHI GTDDAGMFGLHNPYCQQNRFQSMFKTSIELTRNNSRQITNTEASGLWLFV MVDSYCERAKQSTRAPVPTHPSRPPHRSTTQRGTNGYSVPPRITKITRPG LTRGKKIDGKPHENEGSSKVNNMGIIIGASVGIPTLFIICIMVFVIYLRR KQPNPMATNDVSFKNGNVHVQA Run BLAST on NCBI transcript from alignment at scaffold_211:222224..227470- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052168 ID=TCONS_00052168|Name=TCONS_00052168|organism=Clytia hemisphaerica|type=transcript|length=5247bp|location=Sequence derived from alignment at scaffold_211:222224..227470- (Clytia hemisphaerica) ACATGGCTCAATAATCGAACCAACGCAAAGTTCGCCAAGAAATGCTGCTC
TGCATATCTTCAAATCAAACGAAACTTCAACTTCAAAATGGAGACTCGGC
AATACGTTTTTCTATCGTCAAACAAACGATACAAGAATTTTAGAATCGAT
AACAGATTTCTTTAGAACGAACGCGTCTGTCGAGTTTAAGCCTAAAAGTG
CAGTTATTATCACAGCGGCGCCAGTGTTTTCAGACGTTTATCAGATAGTT
TTGGCGAGTAACGATTCAATGACATATGCTTTGATCAACTTCAATCATAT
TGGAACAGACGATGCTGGCATGTAAGTGTAATACGCAGAGTTAATTACGA
AATCGAAAATACAGTAGTTTCTTTAACTCAAGCCTCTATTACTCAAATGT
ATCCTCAACTCGAATAACTTTTATGGTCCCTTCAGTTAACAATGCCCTCT
AAACCTTACTCCATATTCCAAAATTTCCTTAACTCGAATAAATTTGTGTC
ATCCCCCGTGCGTGTTCGAGTAACGGAGACTCTATTGTACTTATTAGTGG
AATTCAATTAACAATTCTAGAGCATTATTGCCATTTCTAATTCTGTTTTC
AGCCGATTTTTCGTTTTTTTTTCTCGCTTGTTGCAACATTGAATCAATTT
ATTTCACCCGCAGTTTAAAACACTGAATACGAAATATTACGATAAAGATT
GGGTGAAAAAATAAAATCCAGATCAGAATAATAGGATCTACTGTGATATT
TTATTATTTTAGGTTTGGTTTACATAATCCTTACTGTCAACAGAACAGAT
TCCAAAGCATGTTCAAGACTTCCATTGAATTGACAAGAAACAACAGTCGG
CAGATCACAAATACTGAAGCAAGTGGTTTATGGTTATTTGTAATGGTTGA
TTCTTATTGCGAAAGAGGTAAACAATTTTCATTAATATTATCTCCAAATT
AAGTCCCTTGTTATTGACGAATCTTAGCAAGAATCATATTCAGGACCATT
GCCTTCCGAAGTCGATCAATACCTATCAGCATTTCAAGTAGATGTTTTTT
ATAAGCATATAAAAATTGAAAACTCTTGGAGGTGCTTAGGTCGAACGCTT
GACAAGGCTGAAAAATGCTTATAAGGATGCTTATATCCCAAACAGAATTT
TCGGGAAATTCCGAAAATCCGTAAAATCTCAGCCAAAAACAAGCAAAGTC
GGAAAGTTTAGGCTCAAGGTAATGTTTAGCATATGCTTAAGTTATTGTCA
TATCTGAGCCTAGTTATGCTTATAAATGAATTTCTTATAAAAAAAAGATG
TAATGATAAAGAAGGAGACATATTACATTTTCTTTTGCCAACTTAGACTT
GGTCTAACCTGAATCGTATTCAAAATCGAAAATTGAAAATTATAAATTCA
AATAATAAAAATTGCCCCTTTTTCTTGGGGTATTACATTTTTAATTGTTC
CTTACGAGGTCCGCTGAATACGAAAAAAGTAACTATCATTTTTTAATCCG
TTCTTTTTTATAGCGAAGCAAAGTACAAGGGCGCCTGTCCCAACACACCC
TTCACGCCCACCTCACAGATCAACAACTCAAAGAGGTACTAATGGCTATT
CAGTGCCACCAAGAATTACAAAGATCACTCGACCTGGATTAACACGAGGA
AAGAAAATCGATGGAAAGCCACATGAAAATGAAGGCTCTAGCAAAGGTAC
ACGCTATTTTTTATAAGAATGTTGTTTTTCTCCATTTCATTCATCATGAA
TATTCATAACTTTTTGGAAAAAATCATCCTAAATTATTCTTACGGTATTC
TTAGGTTAAAATTCAAATTCAATAGACTTAAGGTATGTGTTCACCTTCCT
TGACACATTCTCTTTAATTGATCATCTATATTATAATACGCTTAAATCGG
AACTCTCCCATTCTCGCATGAGGCTTTTTCGCTAGCGATTTTTAAATACA
CGGCAATTTTTTTCGCGCCTTTTTGATTGTATATTCAATTCTATTAGCCA
AGTGCACTTCCATTCAAGAGAGCACATTTCTCCTTGATGGAGAAACACAA
CTGACTGTGCAATAGCACTATCAGCATAATTTATAGTTTTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAAGACATCATATTTATGATTACCCTTGAGATTAATAAAG
CTCCGATGACATTTCCCTTCTATTTGATACTCTGATAAAAACATTTCAAT
TTAATGGACTTGCCAATATGAGAAAAGTTGATGATTTATTCCCAATTCAA
TTATGAAATTTTTTAATCAATGTTTGCTATTTTTTGTTCTATTGAGATAG
CAAAATGAAAACGCTTTTACTTACGCATTGAGTTTAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAAAAGGCAC
TCTTTATATTCCACCGTAAAGCACTGTGGTCTTTGGAGTGATCGGTGTTG
CCAAGTACCTCTAATACTGAATTTGAATTTCTATTTGTTTTTTTATCTTC
ATCCTTGCGTGAGGAAAATAATAGTCTTTCCTCTCCCAAAAACCCAAATA
AAAGCACGTTTAAAGTATGACCGATTTCTCGCGAGAAATTTTTAACTCAA
TTTTCACCAATATTTGCATGAGCATTATTTTTAGTGAGTCAAGAACATTA
TTGTTTGAAGGTTTTCAACAAAAGAAATTATGACAAATTTATACAATTTA
ATAAGGAGAAGAAAAATCAAAATTCAACTAAAAATACTTTCACCATGTTT
TTTAATGTGCATTAATTTTAGTGTCCCCTTAAAAATTTTAAACATCAATT
TTTACGAAAAAGGCCTAAATTTAAGAACATTTCTTCTCGCAAAATAAGTA
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGAACA
ACAAATTTTTATACATCAAAAGTATATATTTTCTGAAAGCCAATAATATT
CTCTTTCTAATGGTAAAAGTTTCAGCTGAATTTAAAAAACTTATTTGAGT
AAATAATCCATCATAAGACGAACTTTGTTTTGAAATTTAAATGGTTATAA
CTCTGGATCTATAAAAGATTTTAAGATCGCGATTTTACCAAAATGAAATC
CAGTAACTTTTCTTCCACTTTGACTGAAAAAATTTTTTTTGACAAAAAAT
CAGAAAAAAGGTGTACACATCTTAACATGGAATACATACCTAAAGCATAA
AATGGCCTTTTTGTGTTTTGAGCCTTACTTGGGGATAATTGGTAATTCAC
AGTTAAAAAGGTTTCAAAATTGGCACTCTTAGCATTAGCCTGGATATCCA
GGCTGTAAACTATTTCACAGTCTATTTCTTTATATTTTTATGTTCTGGTT
TACAGCCTGGTCTCCCTAGAGCGATTTGCATTCTCTTTAAGAGAATGCAG
TCCGCTCGCTTGCGCTCACTTCGCTAAAGCCGTAAGGGCCAATCTACACA
GCGCAGAGCAATTCTAAAGCAAAAATAGGGTAGTCCTCCAGTTGCTAGTG
AAGATAGGGCTTTCTGTTACATGAAAACATGAAAAAGAAGAAAAAAGAGG
CAGGTTCATTTTCCAAGAAAACATGGTTGGTCATGATAATGCATGCAAAC
TTTTTTATGGACTTTGGTGTAATCTTTGGATGTTCTAAATAGTTTTAGAT
CTTGTAAGACTGCTTTTTATCAATTTCTGTTTCGCTGCCCTGGGTTGACT
AGGAAACATGGGTTTGCACTTTCTTTCTCTAGGGAGACCAAGCTCTATAA
TTTTAGAACTTTGTATGTTGAGGTAATTTTTGTTTTTTCTAAAATTTTGA
GCTTGGATATCCAGGCTATCTTAGCATATTCTTAATTTTTCGGCCAATTT
CATCAGGAATATTCTTACACGTTTTTTTTTTTTTATAAGAACGTCAAAAA
TTTTCGAAGCCTTCGGATGTTCTTAGTTTTTTGGATTTGAAGCCTAAAAA
TGTTCTTAAAATGTTCTTATTTTCAGCATTTTGATGTAATTTCTTAAGAA
ATTGCATGTTTTTAAGTCTCCAAAGCCTTAGAATGTTCTTAAATTTTTGG
GCCTCGAAGCCTTATGTTCTTATAAAAAAAAAACGTGTAACAATTATTTA
GGTGGTTAAAAGTTTTATTGCCTGTATTGCCAGCTTTTTTTTGCTATAAA
AACTTTTGCCATATGTCTAATTCGCGGGTCTCCTCTCAAAATTTTGTTTA
TATTTGAACTATTCACATGCGGTTGCGTCCCACGAAAGGTGCTACGGATT
GCAGTAGTGTAGACAAGATGGATGCAAAGTTGGTGAAGGAGAACAGATTT
TTATAACACAGGAATTATTCTTTGATATTTTGAATTGATAATTACTGTGT
CATAAAATTATCTTCTTCTGTATTTTTATGACACAGTAACGCTTCAGAAT
ACAAAAAGATAATTACTGTTTCATGAAAATCTGCTCTCCTTCACAAATTT
TGCGCTCCTCCCCTTGTCTACGCTACTGGATTGTAAGTGTTGCCCCATAT
TATTAAATTTATTTTGACTTTCTACAGTTAACAATATGGGAATAATCATC
GGAGCGAGCGTTGGTATACCTACACTGTTTATCATATGTATTATGGTCTT
TGTTATATACCTTCGACGTAAACAACCCAATCCCATGGCAACCAATGACG
TGTCATTCAAGAATGGAAATGTTCATGTGCAAGCGTAAAATTTGTAGACT
CAGTGTCACAGTAAAAGTAGCTGTTTTTGATTCAAGTTTTTTTATGG Coding sequence (CDS) from alignment at scaffold_211:222224..227470- >TCONS_00052168 ID=TCONS_00052168|Name=TCONS_00052168|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at scaffold_211:222224..227470- (Clytia hemisphaerica) TTAACAATATGGGAATAATCATCGGAGCGAGCGTTGGTATACCTACACTG TTTATCATATGTATTATGGTCTTTGTTATATACCTTCGACGTAAACAACC CAATCCCATGGCAACCAATGACGTGTCATTCAAGAATGGAAATGTTCATG TGCAAGCGTAACGAAGCAAAGTACAAGGGCGCCTGTCCCAACACACCCTT CACGCCCACCTCACAGATCAACAACTCAAAGAGGTACTAATGGCTATTCA GTGCCACCAAGAATTACAAAGATCACTCGACCTGGATTAACACGAGGAAA GAAAATCGATGGAAAGCCACATGAAAATGAAGGCTCTAGCAAAGGTTTGG TTTACATAATCCTTACTGTCAACAGAACAGATTCCAAAGCATGTTCAAGA CTTCCATTGAATTGACAAGAAACAACAGTCGGCAGATCACAAATACTGAA GCAAGTGGTTTATGGTTATTTGTAATGGTTGATTCTTATTGCGAAAGAGC ATGGCTCAATAATCGAACCAACGCAAAGTTCGCCAAGAAATGCTGCTCTG CATATCTTCAAATCAAACGAAACTTCAACTTCAAAATGGAGACTCGGCAA TACGTTTTTCTATCGTCAAACAAACGATACAAGAATTTTAGAATCGATAA CAGATTTCTTTAGAACGAACGCGTCTGTCGAGTTTAAGCCTAAAAGTGCA GTTATTATCACAGCGGCGCCAGTGTTTTCAGACGTTTATCAGATAGTTTT GGCGAGTAACGATTCAATGACATATGCTTTGATCAACTTCAATCATATTG GAACAGACGATGCTGGCATTTAACAATATGGGAATAATCATCGGAGCGAG CGTTGGTATACCTACACTGTTTATCATATGTATTATGGTCTTTGTTATAT ACCTTCGACGTAAACAACCCAATCCCATGGCAACCAATGACGTGTCATTC AAGAATGGAAATGTTCATGTGCAAGCGTAACGAAGCAAAGTACAAGGGCG CCTGTCCCAACACACCCTTCACGCCCACCTCACAGATCAACAACTCAAAG AGGTACTAATGGCTATTCAGTGCCACCAAGAATTACAAAGATCACTCGAC CTGGATTAACACGAGGAAAGAAAATCGATGGAAAGCCACATGAAAATGAA GGCTCTAGCAAAGGTTTGGTTTACATAATCCTTACTGTCAACAGAACAGA TTCCAAAGCATGTTCAAGACTTCCATTGAATTGACAAGAAACAACAGTCG GCAGATCACAAATACTGAAGCAAGTGGTTTATGGTTATTTGTAATGGTTG ATTCTTATTGCGAAAGAGCATGGCTCAATAATCGAACCAACGCAAAGTTC GCCAAGAAATGCTGCTCTGCATATCTTCAAATCAAACGAAACTTCAACTT CAAAATGGAGACTCGGCAATACGTTTTTCTATCGTCAAACAAACGATACA AGAATTTTAGAATCGATAACAGATTTCTTTAGAACGAACGCGTCTGTCGA GTTTAAGCCTAAAAGTGCAGTTATTATCACAGCGGCGCCAGTGTTTTCAG ACGTTTATCAGATAGTTTTGGCGAGTAACGATTCAATGACATATGCTTTG ATCAACTTCAATCATATTGGAACAGACGATGCTGGCATTTAACAATATGG GAATAATCATCGGAGCGAGCGTTGGTATACCTACACTGTTTATCATATGT ATTATGGTCTTTGTTATATACCTTCGACGTAAACAACCCAATCCCATGGC AACCAATGACGTGTCATTCAAGAATGGAAATGTTCATGTGCAAGCGTAAC GAAGCAAAGTACAAGGGCGCCTGTCCCAACACACCCTTCACGCCCACCTC ACAGATCAACAACTCAAAGAGGTACTAATGGCTATTCAGTGCCACCAAGA ATTACAAAGATCACTCGACCTGGATTAACACGAGGAAAGAAAATCGATGG AAAGCCACATGAAAATGAAGGCTCTAGCAAAGGTTTGGTTTACATAATCC TTACTGTCAACAGAACAGATTCCAAAGCATGTTCAAGACTTCCATTGAAT TGACAAGAAACAACAGTCGGCAGATCACAAATACTGAAGCAAGTGGTTTA TGGTTATTTGTAATGGTTGATTCTTATTGCGAAAGAGCATGGCTCAATAA TCGAACCAACGCAAAGTTCGCCAAGAAATGCTGCTCTGCATATCTTCAAA TCAAACGAAACTTCAACTTCAAAATGGAGACTCGGCAATACGTTTTTCTA TCGTCAAACAAACGATACAAGAATTTTAGAATCGATAACAGATTTCTTTA GAACGAACGCGTCTGTCGAGTTTAAGCCTAAAAGTGCAGTTATTATCACA GCGGCGCCAGTGTTTTCAGACGTTTATCAGATAGTTTTGGCGAGTAACGA TTCAATGACATATGCTTTGATCAACTTCAATCATATTGGAACAGACGATG CTGGCATTTAACAATATGGGAATAATCATCGGAGCGAGCGTTGGTATACC TACACTGTTTATCATATGTATTATGGTCTTTGTTATATACCTTCGACGTA AACAACCCAATCCCATGGCAACCAATGACGTGTCATTCAAGAATGGAAAT GTTCATGTGCAAGCGTAACGAAGCAAAGTACAAGGGCGCCTGTCCCAACA CACCCTTCACGCCCACCTCACAGATCAACAACTCAAAGAGGTACTAATGG CTATTCAGTGCCACCAAGAATTACAAAGATCACTCGACCTGGATTAACAC GAGGAAAGAAAATCGATGGAAAGCCACATGAAAATGAAGGCTCTAGCAAA GGTTTGGTTTACATAATCCTTACTGTCAACAGAACAGATTCCAAAGCATG TTCAAGACTTCCATTGAATTGACAAGAAACAACAGTCGGCAGATCACAAA TACTGAAGCAAGTGGTTTATGGTTATTTGTAATGGTTGATTCTTATTGCG AAAGAGCATGGCTCAATAATCGAACCAACGCAAAGTTCGCCAAGAAATGC TGCTCTGCATATCTTCAAATCAAACGAAACTTCAACTTCAAAATGGAGAC TCGGCAATACGTTTTTCTATCGTCAAACAAACGATACAAGAATTTTAGAA TCGATAACAGATTTCTTTAGAACGAACGCGTCTGTCGAGTTTAAGCCTAA AAGTGCAGTTATTATCACAGCGGCGCCAGTGTTTTCAGACGTTTATCAGA TAGTTTTGGCGAGTAACGATTCAATGACATATGCTTTGATCAACTTCAAT CATATTGGAACAGACGATGCTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052168-exon-scaffold_211-1575043694:227150..227470 | TCONS_00052168-exon-scaffold_211-1575043694:227150..227470 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1575043694:226554..226708 | TCONS_00052168-exon-scaffold_211-1575043694:226554..226708 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1575043694:225775..225957 | TCONS_00052168-exon-scaffold_211-1575043694:225775..225957 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1575043694:222224..222443 | TCONS_00052168-exon-scaffold_211-1575043694:222224..222443 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1510915933:227150..227470 | TCONS_00052168-exon-scaffold_211-1510915933:227150..227470 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1510915933:226554..226708 | TCONS_00052168-exon-scaffold_211-1510915933:226554..226708 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1510915933:225775..225957 | TCONS_00052168-exon-scaffold_211-1510915933:225775..225957 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1510915933:222224..222443 | TCONS_00052168-exon-scaffold_211-1510915933:222224..222443 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1491911889:227150..227470 | TCONS_00052168-exon-scaffold_211-1491911889:227150..227470 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1491911889:226554..226708 | TCONS_00052168-exon-scaffold_211-1491911889:226554..226708 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1491911889:225775..225957 | TCONS_00052168-exon-scaffold_211-1491911889:225775..225957 | Clytia hemisphaerica | exon |
TCONS_00052168-exon-scaffold_211-1491911889:222224..222443 | TCONS_00052168-exon-scaffold_211-1491911889:222224..222443 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_211 | supercontig | scaffold_211:222224..227470 - |
Blast
The following BLAST results are available for this feature:
|