TCONS_00052180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052180
Unique NameTCONS_00052180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052180 ID=TCONS_00052180|Name=TCONS_00052180|organism=Clytia hemisphaerica|type=transcript|length=2116bp
CTGAAGTATATATTGCAGACtaaatttaaattataaattgtatATGATGC
AAAAGATGTTTGTTTAAATCTTTTCCAAATTACACTCAATGACGACTATT
TATATATCCTGATTGTTTTAATTCCAGATATTTTACTTTAATAAAGCCAA
CTTTACAAGTCTATGTTTTACTGATACTTTTAGTTTTTGGACTTTTCGTT
CGGTAAAGTTCACTTTTCAGAAGAACACGGAGGCGAGggagaaagaaaga
aagtgaaagaagaagaagaagaagaagaagattatTCGAAAGAGCCGCGA
CTCACTCAACGCACGAATTTAAATTTACTTGATAATTTTTTGTGCAAATA
TGGAGGAAGAAACTCAAACGAATGTTGAACAAGAAGTGTCTTCAACAGTT
CCAGAGactgtaacaaaagaaaatGTCGagacaatgaaaaaagaaaagaa
aacagaaaattgtCAATTCAAAAGCCGACTTGGAATTTATCTTGTCAAAG
CTGATCTTCCTCAACATGTCTTGGATGCAATCTACTGGAACAAAATTCCC
AAAACTGCTGGGATGTTTGGCGGAATCATGTTTTTGCTTATGTCACTCTA
TTGGTACCCATTCCTCACTGTTGTGACAAATTTCTGTCTTGCACTGTTAG
CTGTTGCCTTTTTATATCGTATTGGAATGACCATTGTCAATGCTGTTCAG
AAAACTTCACCAGAGCATCCATTtcaaaaattgcTGGAAAAAGACATCAA
AGTTTCTGATGAGAGAGTTGATTCTTTCTCTAAATGCTTGGCAAAAGAAA
TCAACTGCACTGTCAAATGTTCGCAAGATTTGTTCCTCGTGAAAGATGTA
TTCAAGTCAATGAAGTTTGGAGTTTTATTGTGGTTGTTGTCTTATGTTGC
TTCATGGATCAGTCCATTAACAATGCTCACGCTGTGTGTTCTTCTTGCCT
TTACTGTTCCAAAATTGTATGAAGAAAAATATGTTCAAATTGATGAGGCT
ATCAAAAGTGTTACAGTTGCTATTGGAGCAGTGCTTGAAACGGCGAAACA
AAAGCTTCCACCTTCAGCTCTAAAGTATTTGGGAGTAAATGaggagaaga
aaacaaattgAAACCGTAGGACAACCATATTACCAAATGGAAGGACTAGT
AATTGAAATTTAGGCTCCATTATATTCTGGCACCTGTGACAGTTTCTCAA
AAAGACATTTAGCAAAATCAACATGTTGTTGCATAGAATGAATATATTTT
ACTATAGGTTTTTACAACATTTTTAACAGAGACTAAATCGTCGTCTTAGT
TGACTAATGCTagttctgttttgtttttgtttttgattgtaaAAGTGAAT
TTGTTCGGTTTTAATACCACGCATGTGCTTTGCTGAGAAAATACTTCCAC
GGGTACGATACATTCCATCTCGTGATAATAAGTGTatggtgtttttgttt
tttgctttattttagaaagatttttatttaaaatgaaaattaatttttaa
ttttagttcTTAGGCATTTGATGTATTATTTAAATGAGATTTTAATTTCA
GTCATATAGTCTTTAGTCATAGTCATTTTACCATTAACACATCATCTAAA
GTGCACTTTTTTGTGTATCTCTAGTGTAGATATATCCATAAAAAGTtaca
taaaaatttataaagtcaTTATAACTGGACTAAGCACGCTAAAATGTATT
ATTGCAAGTATATATtatgacattttaatgaaatttatttgtttGGGATT
TTGCATTTCAACTGTAGTATAAACATTTTTTCGATAATATTTTTGCAAAT
TCTTCTTAGAAATCTATTCCATCTTTACAGTCCTTTTGTAAAACCGGTTG
AAGAAAAATGCGccctttttctttttaacttgAACGCACATAAACAAAGT
CTAGAATTTCTCAAGTTGTTGAATGAAAagtatttgaatttttgaatttt
taattgTAATAATTTATTCCCAAAGAGTATCATTTAGAAAATATATCAGA
ATTTAGAGCATCTTTCAGTTACAAAATTATGTTGTATGTTGTGCTTTGAT
TGTGTTTTTAAACTTTCTatcatataaaaattttgaatgattaATTTCAG
AAGGTTTGAATTACTG
Run BLAST on NCBI

transcript from alignment at scaffold_212:71016..84548+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052180 ID=TCONS_00052180|Name=TCONS_00052180|organism=Clytia hemisphaerica|type=transcript|length=13533bp|location=Sequence derived from alignment at scaffold_212:71016..84548+ (Clytia hemisphaerica)
CTGAAGTATATATTGCAGACtaaatttaaattataaattgtatATGATGC
AAAAGATGTTTGTTTAAATCTTTTCCAAATTACACTCAATGACGACTATT
TATATATCCTGATTGTTTTAATTCCAGATATTTTACTTTAATAAAGCCAA
CTTTACAAGTCTATGTTTTACTGATACTTTTAGTTTTTGGACTTTTCGTT
CGGTAAAGTTCACTTTTCAGAAGAACACGGAGGCGAGggagaaagaaaga
aagtgaaagaagaagaagaagaagaagaagattatTCGAAAGAGCCGCGA
CTCACTCAACGCACGAATTTAAATTTACTTGATAATTTTTTGTGCAAATA
TGGAGGAAGAAACTCAAACGAATGTTGAACAAGAAGTGTCTTCAACAGTT
CCAGAGactgtaacaaaagaaaatatcgAAGATGTCGAGACAGNACAAGA
AGTGTCTTCAACAGTTCCAGAGActgtaacaaaagaaaacatcGAAGATG
TCGagacaatgaaaaaagaaaagaaaacaggtATTGTATTTTGTACCAAT
AACTAATTTGTTAAAAtagatcttttttaaaaagaatacaGGATAACTGA
GAAGTTTTTCCAGGGAGTATTGGTCGCAGCGTTTTGGCCCATCAAAATTT
GGGTATATGtcatagtcccgctgctgagatcgaaaaaagtggctagaaaa
caattttcgtgacacacatctccagacggtgtcaatcgaacaacttcgaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAtgagggcgcccttttggatctattgttaactcattta
aaatggtggacagagttgcggAATGACGAAGGCGCCCactgcttcgaggg
tggtaacgccaaaacggcCAATATGACCAgtcaacagaaggcgagtttgt
tGCCGCGTGAGNgttcgacaatcgaattgcaattattcgattgcgttcaa
ttgcgttcgattgattcggcgttcgattcgttcgattgacaccgtctgga
catcttagaactaactttttttggtggaaactcacgaattagtattatgt
agattccaaaatcaaaaagtttccacgatattatcgtgcaagtaacgagt
aattggcgattttttgcgtttccaggcaaaattgcaaggcctggaaattc
atatTATTCaatattacaccaaagtcccagcttctctagatcaaaagtta
tgggcctatttgtggtcaaaaaggtgtttaattttgcataaattaatgca
gattgtggggaaattccctgttttccatcagttttttaccacaaatagcc
cagtaaattttgatctagagaagttgggactttggtgtaatacacttttt
tgctcagtttgaagagctctatcatgtgatataggtctttttttaatttg
aagaccccccaaaaatcatttttgaatttccaggccttgcaattttgcct
ggaaacgcaaaaaatcgccaattactcgttacttgcacgataatatcgtg
gaaactttttgattttggaatgtacatatactaattcatgagtttccacc
aaaaaaagttagttctaatatgtgtgtcacgaaatgaaacatttatcgAC
CTCAGCAGCAGGACTATCAGTCAAAGTCACACTagcagtcgggtgtttaa
gataaaaactgcaattattgctcttttcggaaattattgccgaaaacggc
aatttttctaacgatgaaatgctgaatcagcagaaaaataaaaaagtaca
caaatgaaaattgccgaaaacggcaattattgccatttttgcaaataaaa
gttgactttattattgttattgaacacgtggtatttgacacccttgCGAT
AAGTtggcccactgtgcctcgtttagttttgttttcaactggtttttgtt
ggaaatgcagatagcaaaatcaagtcatatgtaaacaaatttaacggggt
tttgttatctctttctggctgtgtttcggcattgATGCAGGATCTTTCAA
CATAATatcattttaaaacttttcatgttattgagcaacgaaaaatttaa
aaaatcacttttaaaaatccgaaaatcctttttctcgatgcaattttact
attttcaaacacctctgacatctttgcccttaaaaggacaaaacattttg
ctgattcagcattttatcgttaaaaaaattgccgttttcggcaataattt
ccgaaaagagcaatattttgcagtttttatctttaaCACCCGACtgacta
gcgtcccgccaaaattcACATCGAAGATTAATGCTGCGGAAGCGCTATAT
CGTTcacttgactcgcaagcaaacaagtgcgccgcaaaacttctaaagga
attcatgaaaaaataacccggcaCTTTTTAATGAAATTAACATTTTCAAA
AACTATGAgaaattgcctaaaatttgagccatagatgaaaagatttgagc
caagccaaccttgaaaactaatttgaagatcaacttcccaagaaaaagat
ctacgagGGAGatggaacccacctagatccatGCACccccggataggcta
tttctctgaaaatttgccggacctcaaacactggaCCAATTTACATGtac
ggaattatttttactttagcgtattaagaaggccttaaaaattgaagcaC
TGTCtagggaattgaatgacaaatttggTTGGTTAATAATCTGGCTGTTG
CACGTTCACAATCGGTCATTTAGCCTCCtttaaagttttcaagttttaat
taattgtcttgggaacttgaaaatgtttatttctataaggaattttataa
cacttcatggcagattaaaaagatgATCAGAAACCGAAAGCTTCTTCGTT
TTTCCTTTTCACAtttcgccgtgtcaattcaagacagccctaagtccatt
ttttccattttgagataattgactttaaaggttTCATTTGCTGATAATTA
AGAAAGAAATAATGCCAAGAGTCCATACTTTTGATATTATGGGGGCATTA
TAGTTATCTTTTTGTGGTTAAAAAGAGGTTTTAATAGCTTGCTCCAGAGG
CTCTAAAATGGCATTTATTGGACTTAAGGCTGTATTGAATTgaacttaaa
atcttcatacttaGCAAGTTTCAAGCTAAAATCGAGCTTTAAAATGCCTC
AAGTCCATTAACCagatgtgttggacttaaggctacacatttcatgtcaa
tgcttcatagaaaaATAACATTTGGACATAAGGCTTCCCAAGACTTTTTA
CCCTAAAATTCAGGACTTAAAgctgtttatggttgatattatggaacatt
ctaaattcttatttttttttgaattgcaaaatacaccACTTTCCTATAAG
AATTCTGTGGATTTGAggccattttttggaaaacgtgcatgctgaaatag
ggggttatggtcttaactcaattttcgaaaaaatggacttaagtctgtct
tgaattgacacggcgattTATggggaaaaataaaatttcagaaGATGTTT
ATTCGATGAGGATTCCCATTTTCCTAAAATCGCAATTCCCCATGGTTGCA
AAATAgtggctatgggtaattcctttgttttttttatattttgttctaTG
TGACGTAAAGAGGCATCACAAATCAAGGTACTTCAACTAACTGACAGATA
GGAATTAGTAGGAAGGTCGGAATGACTGATGGAAACTTTATATACTTACT
TGGAAGTGCTTTTGGTTGTCTTTCTCTAGGTGAGCAATCTAATGTACGCG
CCTGCTTGTTGTTGATTTGATATTTAATTGAGTTGGATGCAGCATTGGTT
TTAAACCCGGGAACACAGGGTTCATCTGGAAAGGGAGCAAGGAACTTTAT
TTTGAAGGTTAGGCGTCAATCACATATAAGTTGTGTTCACATCATTTCCA
GCACCATAAAAGGAGTCagtcggttggtcggtcggCACTAAAATCGTCAG
AAAAGTGCGGCTAGAATTATCAAGCGCACTAACTGCATTATGATCTTTGT
TACATATCACAGTTGCAAAAAAACAGTCGCATCGCGCTTTTTAACGCAaa
taatctttgaaaaattacggaCAGAAAGCTTCTTTGAACTAACACTGGAT
GATCAAATCAGCGACTAACGATGAATGTacaaaatgctttgaaaaatatt
ggttAAAAAATCCGATAGATTTCCGACTTTCCGACTGAAAAgtgtcggat
ttttaagatagaaagtgagtcggtcggacgACGCAAACACAACTTATTCG
TGATCTACGCCTTAGCAAAGGGCATCCACTTaaattcttcaattcttttg
ggAGGGAGTTGAACTAGTTTGCCCATGGGTAGACAAGAAATTATATCGGA
TAGTCTGTAAGACAGCTGATGTTCTTGGATTTTTGGCTTTGACAAAACAA
AATCTGCCAAATCTGGGTTGTTGAAAAATAGATTGTACAGTAATGTTTGG
CACAAGGTTTTCAagtatctgtttttttttgtatctCTTCAAGTCTTAAA
TAAAGCCGACAACACCAGGGCTCCATAGAACTGAGTAGTACTCCAGAATT
AGGATACAAGCGTTTTATATAGAGTAAGTATAGTATGAGATGAGCGGCCC
AAGTGAAGGTTCGTAATATCCAAGAAAtgagattttttgctttttcaatC
TGATTTTTGAAGTGACAATTGTTGGACATTAGAACTCCCAAATCTTTAAC
AAATCTACATCTACACCTTTGATGAGCCTTgtgtcatctgcaaaattttG
TGTGGAAGAGTGTTGAACTTCATAATCAATAATGTCGCCCATTAAGATGT
CGAAAAATTgcaatttcttctattttttgaaatttcaaatggcctttgat
tttcaaaaaaagctggAATCCAACCCTGGGATTACTCAGGGAATGAATAA
CGTATCACATTTTGTGGTTAGCGATACATTTTCGTAAATGTACGAAgcag
aaattcaaaaattctgcaaaatcgGGATGCAACATATGTcatcttctttg
aaaaatgtttagttTAAACAAGTATTTTGAAGCGAATACAACTGTTACTT
TGCTTCCAAATCATCCTTAAAAAGTAGAAAATGCATTGTATATTGATAAA
AGCGCATTGTGAAAGCTAAATAATTTTGAGGCTGTGGCGGGCTTATTTAA
CTTTCCTCGGTTCCCCAAAAAGTCTGACTTTATTTCAAATCGTTTATTTT
ATCCCTGTTACTAAAAAAGCGCAATCGAAAAGAGGCACCAGCTCATCAGC
AGCTGCCATTTGTTTCCATGTGGGTCAAGAATTTTCCAGTACTGTAAAGT
CAGCGCTAAGTCATGTTTTCACCTTCACGTCAAATAGCatcaatatcttt
ggaaagaaaagatatagttaaatgtagtttttttacttgtttccctgata
atttcTGATTAATTGAGAAAAACAATAAACAGATTGGGATGCATTAAAGT
ACTAATGCAGTTAGGTTTAACCGTAGTATACTAAGACCAGAGAATATACT
GCGACCTCTTATAATATACTAAGATATTTGACTTATATCAGGTGGTGGTA
AACTAAGTGGTCGTAGTATGCTAAGAGATTTGATTTCTGAGAATGCTATT
AGCCTGACGTTTTTCTCAGCGAGAAAGTCTTTGTGGGGAGTTTGGGAGTT
aatttagaagtctttttttatttagaattaCTTCTAATCAATCCTACAGG
TCCTTTTTGCAAATAATTTTACTGCATATTTGGGATGGATTTTCAATCAA
TGGGTAGACCAAGAGGGGAGAGTAGTTTGTCCCGGTAGACCTATTCTTTA
CGCTGCAATCCCTACACATTGGTCCCATTCCGGTgtcttttaaagggaca
taaaagtacctagtaaaatgtaaacattgcgcgaactacgtgtcattaaa
aagaacaattaaagTCACATatccaaaacaaacaaaatcagccatatttg
tttttattttttattttggcatgtgacatttgttttgagtTTGTATCCCG
CTACAtatggtttgtttacaaattttgtcagtacttttatgtcccttcac
TGATTAGCACCtaattaattggtcattaagaaACAAAGCAATGGCATGTA
ATTTTTCTAAGGAAACaggaaatttttagatttatagCTGCTTTTACCCT
TAAGGAATAAGAATTTGTTGAGGGCATTTTCCAGTGTTGAGGAGCCTCTG
GAAAGTTTTGTACGTGAATTGAATGTTAAAAAGATGTTATGTCTTAGTAT
ATAAAGTTACGGTAAGATGTTAGTATGCTATGGTTAAACGCGACTGAATG
CATTGAAGTTAATTTTGGTAAATTCTTCTTCATTTCGCTCAAAAAAATCC
TGATGATTGCGCATCCTATCAAACTGGCTGGGTTTTCCACTACAGCTCAT
AAATACTTATGTAATGCTGGCATACCTTGTCTATTGTCTTGTCTAATTCT
GTTATAGCAACTTTCTGGTCTGCCAATGGTCAAGCAAGTATTTGGAGTAG
TTTTTTTAAACTAATCAGCTCTCTCAGAATAAAGtcttatattttgtttt
catagtaaaaacattaaaaataccaGATGGTGGAATTAGACATGGTATGA
CAGCATTACACAAAGATACAGTACACAAGCCAGCTAACCTGCCCTTGTGT
GAAAACAATCTCAACAAActgcaaaacatttttttcttcatggCTTTTTA
ATATCTGGTCTAGAGAAACTGCCACTTGAAGGCAATGGTCAGATAGCATA
GATTCACACATGGATTACTGAAGCtttaaaaataatacaaaatttcaaaa
tgttggtGTCAAAGCTTAGTTGATTTTTCTCAATTTGAGTGTGCTGTTTT
AGAATTTGAACGAAGGAAATTGTCCATAAATCAGGATTACTTTATGTAGA
TAGAATAAGACCTTTTTTACCATTAAACGTCCATACCTTTTGATCTAGga
aagttggtacttttttgtgcagttgtttattttgaagatatccccaaaat
tatgaattttaagACCTTAAAATATTGTCTGAAACTGTCTGAAAATGCCA
AAATACACGAGCTTGAAAACACTCAAATCAGAAACTTCAAAAGAATCACC
AAAACAAACCTTTGAAAACTCAAGCAGATGCTGTTCTGCCTTTCTATAAT
GGGCTGACTGTCTGAAAGTCTTATAAAATCGTTAAGCTTAGTTAGATTAT
TAGGATATCAGATTTAGTGGGCTGAATTTTTACCATGCCTTTTCTAATTG
CTAGATTTGTGCCTGACTTTGAGCGTAATTctaatgaatttttgaaaatg
cagAACACAGATAGGATGCGGGCGTACAGAAGGTCGATATTTATGTACCA
GTCCCGCAAGATGCAGAACACTTAGTAACTATGAATTTGACAAATCTTGT
AAGGCCATTAGTTTCTCAATCGAAAGGGCTGATGTTGTCCTTTGATTAAA
GTGTTTTATATGTGAAATTTTTTATgtgtaaatttttctttcaaaagaaa
aaaaaagatctctCGCAAGTTTGGGGGGATGAAAGCACTCTTTATTTCAC
TTAGGGTAAGTggaagaaagatttacaaaatagaaaagtttctttttggg
gtaaagaatcagttttgtaaatttaaaaaaaaattttgttttgcaagTTT
TTTTACAGAGCCAAatgaatattttatttattgttctTGCTTGACTTTAA
GGATAGGTTCAGAAAGTATGAAGTTATCGAGACCATAATGTAATATTTTT
GCGgataaacaaaatttgaaattattcctTTCTTCCCACTAAATAGCACT
GTACTTTAAAAAGAAGTAATAGACATGAATATCCATGAAtgtgtgaaaaa
ataaaatttttggataGATTTTTTCCCATCTTACAGGTTATAAGATGTTA
AAACTATCAAAATATCATTTATTAGTGCTTGATTGTTGAAAAGGACGGTA
TTTGATTAtagatacaattttttttaaacagaaCACTAAAACCTTTTAGG
GAATTTGAAGAGGACTTACGTTACAGTAACTTTGTAACAGCCAGTAACAG
CCCAAAGAAGAAGTTGTTAATTTACAATAACAACTGTCAAATTATGCTTA
TTAACAGTAACCTGTGCTTATCTGCTGTGGTTTCCTGATATAATTTCAGA
CAAATCATAGAATTGTATTGACTTTGGTAAAgaattttttcttacttttc
atATTGCAATGGAGCAAATGAGATAATTTTCAGGAAATAATTACACACCC
CTTTTTTAGCAAAcagttttttcttctcttttttgttgttttcttctctt
ttcttAGAATGAATTTTCATTATAAATTCTTTGAATGAACCACCTGCTTA
CTAGTGCtttaaatttcttcttttaagttATATTATGTTTTTCCTACTAT
TGATAAAATGGGATTCAAATGAAAAATGTTCTGCTTTTATTTCTATATGT
TTTTgcaaacttttatcaaaaactcCTAAGTTTAGTAGCTTTTATAAAGA
GCTAGAGATAATTCTGCTGAATTTTTAAATGTGATTTGAGTGAATTATGT
CTAAGAGTAAGTAATTTGTATGAGAGATCTTATAGTTttgattattaaaa
aaatgcatCATTCTGATTTAATAAGTTTTATCTATTTCATGTATATAGAT
AAGGGTTAATTATAGCTCCTTGAATGGATCTTTAAGTCTAGGTAGTCAAA
AAGTAAACTAATGAGAAAAGACCAGATTTAGCTCTCGTTGATCAAATTTA
AttcagattttttgtcaaaactttCCGGAACATGAaagaaattttctgaa
aaagggctAAGTTCCTAAATTGCCTCACACAAAATTTAAGATCTTCGATT
TACAactaaagttttgattttgttttattttagaaaattgtCAATTCAAA
AGCCGACTTGGAATTTATCTTGTCAAAGCTGATCTTCCTCAACATGGTAT
GAAATACAACACAATTCCCCTATATTTACGTCTTCAAGTCTCAACAAATG
GCTTCCTCCAACATATTTATCTTTAACTCAAGTTACTTGTTAAATGGAAA
TTTCATTTAtcaatttattcatttttaaattaaatgtCTTGAATTTGGAA
GGAATTCTATTTGAAGCCATTTNAAATTTCATTTAtcaatttattcattt
ttaaattaaatgtCTTGAATTTGGAAGGAATTCTATTTTAAGCCATTTCA
GACTAAATGTGTAAACAAAAGGTCTGAACCCTAGAATATATTTCGGTGCA
CTTTATAAAAACTTTTGTTgctcttttaaaaatttttaaacattcaCTTA
TTTGTTTCATATACAATATAGTCTTGGATGCAATCTACTGGAACAAAATT
CCCAAAACTGCTGGGATGTTTGGCGGAATCATGTTTTTGCTTATGTCACT
CTATTGGTACCCATTCCTCACTGTTGTGACAAATTTCTGTCTTGCACTGT
TAGCTGTTGCCTTTTTATATCGTATTGGAATGACCATTGTCAATGCTGTT
CAGAAAACTTCACCAGAGCATCCATTtcagtaagttttatttttgtcttG
GCTTGGTCTCCTCTTCATATAAATGAAGAAGATCCATAATCCTGGAAAAC
CAAACTGGCTTGAAAAATTATGCCTTTCTTCAATCAAATGTAGATTGACT
TAATGATAGacttttaaaatgtaaacattaacGTCACGAGATCATGATGA
ACCAAAAagcaatttcagaaaaaattgcTATGGGTTGTTcataaatttga
atattttagtCACACAAAACCAAATTGGGACAATGTTTGATGTCTGGTGG
CTTTTCCCTAACTTTATACATCGtttcttttctcatttttttatagaaaa
ttgcTGGAAAAAGACATCAAAGTTTCTGATGAGAGAGTATGGCATATTTT
ATTTCATGgttgttaatttttttacaaCATTATTTAAGTTACTTTCAACT
CTTAGGCCATaaatttgctttttataaaCAGTAATAATCGTTAATAATAC
TCATAAATAACACTATTACTTGCTCTTAGGTTGATTCTTTCTCTAAATGC
TTGGCAAAAGAAATCAACTGCACTGTCAAATGTTCGCAAGATTTGTTCCT
CGTGAAAGATGTATTCAAGTCAATGAAGGTAAAAAGTAATCTAGATATAT
TATTATACAGTTTTCCTTTTCTAGTCAAATTCTTAGTCAAGAAGTAGCTC
TTGAACCAGCTTGAACCACTTTTCGTTTTAGCCAGATTCAAATCTATGAT
CCtttcatggtttcagcccacttttcaggtacaCGCAACGAAACATGGTA
CCCCTGATGATTTAGTTCTCCTTTGccttgagttaggtaccccatTCACC
TAAAAAATCTGGTACCGGGTGAAAATTGAACATATGCATATGTATTGTGT
CAAGATCTGTTACTATGCTCTAAATATGAATGGCAGCCATGGATCAAAAT
AACAATATATAGATTCTACCAAAGTTGAAAATGGAAATCTGGAATGCCGA
ATTGTCTGCGTTTCAATGTGAAAATACTGGGAATTAGCCCCCAGAGTTTC
TATCAGATAAACTGGGTACCCTTAACTAATTGGTAACCTTATCAAATTGC
TAATTTTCAGCTCCCATCTCTCTAACGATTAGTGGCTCCTTTAGAAATCT
GGAGGGTCTGAAACCATGCCTTTTTATCACAGTGTATAATTAAAACGATG
CGTTTAAAGGTTTGGTATTAATTAATCAACCTTTTTCCTCATAGTTTGGA
GTTTTATTGTGGTTGTTGTCTTATGTTGCTTCATGGATCAGTCCATTAAC
AATGCTCACGCTGTGTAAGTGAATTCGAACAGCTCCCACAACAAATGTAC
AAATACTGCAGAATGTTGAAGAAATGATGCTCTTGACCGTACTTTTTATA
CTCTTTTTTTCAATCAAGTTTGTAAAgtcaattttgtgaaaattttgatc
AGGGATATTGGAACAatgaatttagaacgccatcATTGGGAATTATAAGG
TCACAATATTACGAAAACTCAACCATTATTAAACTAACAACCTTCTATTT
TTTAGGTGTTCTTCTTGCCTTTACTGTTCCAAAATTGTATGAAGAAAAAT
ATGtaagttttctttgttttttgtttcGTTTTGGTTGATTTTCTAATGTT
AAAATTGCTCTTCATTCTTGTTAGTTACCATAATCGACAATATTgccaaa
agtttttaaaaggcTAAAGTGTTATatattattcttaaaatttaaaacaa
attttttcccCCAGGTTCAAATTGATGAGGCTATCAAAAGTGTTACAGTT
GCTATTGGAGCAGTGCTTGAAACGTAAGATTTTTAAGTTGATTTCAGTAC
ATACATGGCATGTCCTTTCTGATCTTTATGTTCATTGGGTCACTGATTAT
AAATTTATGAAAACGAAGCTTTTCAAGATGTATCAAGGTCCTCAGTAGAA
AAACAAATCCATAGGTGCATTGAGGATTTCACTCAATACTTTTATACTAA
TACTGGTCGTTAATCTAAAATCCTTTATGCATTACTCTCTTAATTTTATT
TCCTTCAGGGCGAAACAAAAGCTTCCACCTTCAGCTCTAAAGTATTTGGG
AGTAAATGaggagaagaaaacaaattgAAACCGTAGGACAACCATATTAC
CAAATGGAAGGACTAGTAATTGAAATTTAGGCTCCATTATATTCTGGCAC
CTGTGACAGTTTCTCAAAAAGACATTTAGCAAAATCAACATGTTGTTGCA
TAGAATGAATATATTTTACTATAGGTTTTTACAACATTTTTAACAGAGAC
TAAATCGTCGTCTTAGTTGACTAATGCTagttctgttttgtttttgtttt
tgattgtaaAAGTGAATTTGTTCGGTTTTAATACCACGCATGTGCTTTGC
TGAGAAAATACTTCCACGGGTACGATACATTCCATCTCGTGATAATAAGT
GTatggtgtttttgttttttgctttattttagaaagatttttatttaaaa
tgaaaattaatttttaattttagttcTTAGGCATTTGATGTATTATTTAA
ATGAGATTTTAATTTCAGTCATATAGTCTTTAGTCATAGTCATTTTACCA
TTAACACATCATCTAAAGTGCACTTTTTTGTGTATCTCTAGTGTAGATAT
ATCCATAAAAAGTtacataaaaatttataaagtcaTTATAACTGGACTAA
GCACGCTAAAATGTATTATTGCAAGTATATATtatgacattttaatgaaa
tttatttgtttGGGATTTTGCATTTCAACTGTAGTATAAACATTTTTTCG
ATAATATTTTTGCAAATTCTTCTTAGAAATCTATTCCATCTTTACAGTCC
TTTTGTAAAACCGGTTGAAGAAAAATGCGccctttttctttttaacttgA
ACGCACATAAACAAAGTCTAGAATTTCTCAAGTTGTTGAATGAAAagtat
ttgaatttttgaatttttaattgTAATAATTTATTCCCAAAGAGTATCAT
TTAGAAAATATATCAGAATTTAGAGCATCTTTCAGTTACAAAATTATGTT
GTATGTTGTGCTTTGATTGTGTTTTTAAACTTTCTatcatataaaaattt
tgaatgattaATTTCAGAAGGTTTGAATTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033042XLOC_033042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052180-exon-scaffold_212-1491911889:71016..71439TCONS_00052180-exon-scaffold_212-1491911889:71016..71439Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:71016..71439TCONS_00052180-exon-scaffold_212-1510915933:71016..71439Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:71016..71439TCONS_00052180-exon-scaffold_212-1575043694:71016..71439Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:71515..71545TCONS_00052180-exon-scaffold_212-1491911889:71515..71545Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:71515..71545TCONS_00052180-exon-scaffold_212-1510915933:71515..71545Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:71515..71545TCONS_00052180-exon-scaffold_212-1575043694:71515..71545Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:80799..80861TCONS_00052180-exon-scaffold_212-1491911889:80799..80861Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:80799..80861TCONS_00052180-exon-scaffold_212-1510915933:80799..80861Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:80799..80861TCONS_00052180-exon-scaffold_212-1575043694:80799..80861Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:81237..81444TCONS_00052180-exon-scaffold_212-1491911889:81237..81444Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:81237..81444TCONS_00052180-exon-scaffold_212-1510915933:81237..81444Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:81237..81444TCONS_00052180-exon-scaffold_212-1575043694:81237..81444Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:81762..81801TCONS_00052180-exon-scaffold_212-1491911889:81762..81801Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:81762..81801TCONS_00052180-exon-scaffold_212-1510915933:81762..81801Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:81762..81801TCONS_00052180-exon-scaffold_212-1575043694:81762..81801Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:81945..82043TCONS_00052180-exon-scaffold_212-1491911889:81945..82043Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:81945..82043TCONS_00052180-exon-scaffold_212-1510915933:81945..82043Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:81945..82043TCONS_00052180-exon-scaffold_212-1575043694:81945..82043Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:82660..82729TCONS_00052180-exon-scaffold_212-1491911889:82660..82729Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:82660..82729TCONS_00052180-exon-scaffold_212-1510915933:82660..82729Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:82660..82729TCONS_00052180-exon-scaffold_212-1575043694:82660..82729Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:82971..83017TCONS_00052180-exon-scaffold_212-1491911889:82971..83017Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:82971..83017TCONS_00052180-exon-scaffold_212-1510915933:82971..83017Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:82971..83017TCONS_00052180-exon-scaffold_212-1575043694:82971..83017Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:83180..83238TCONS_00052180-exon-scaffold_212-1491911889:83180..83238Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:83180..83238TCONS_00052180-exon-scaffold_212-1510915933:83180..83238Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:83180..83238TCONS_00052180-exon-scaffold_212-1575043694:83180..83238Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1491911889:83474..84548TCONS_00052180-exon-scaffold_212-1491911889:83474..84548Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1510915933:83474..84548TCONS_00052180-exon-scaffold_212-1510915933:83474..84548Clytia hemisphaericaexon
TCONS_00052180-exon-scaffold_212-1575043694:83474..84548TCONS_00052180-exon-scaffold_212-1575043694:83474..84548Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:71016..84548 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.839899	0.41032	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00052180 vs. Swiss-Prot (Human)
Match: RTN4 (Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.075e-32
Identity = 72/199 (36.18%), Postives = 116/199 (58.29%), Query Frame = 2 
Query:  404 ETVTKENVETMKKEKK-TENCQFKSRLGIYLVKADLPQ-HVLDAIYWNKIPKTAGMFGGIMFLLMSLYWYPFLTVVTNFCLALLAVAFLYRIGMTIVNAVQKTSPEHPFQKLLEKDIKVSDERVDSFSKCLAKEINCTVKCSQDLFLVKDVFKSMKFGVLLWLLSYVASWISPLTMLTLCVLLAFTVPKLYEEKYVQID 994
            E++ K  V   + EKK   + + + R    +  A+L +  V+D +YW  I KT  +FG  +FLL+SL  +  ++V     LALL+V   +RI   ++ A+QK+   HPF+  LE ++ +S+E V  +S      +NCT+K  + LFLV D+  S+KF VL+W+ +YV +  + LT+L L ++  F+VP +YE    QID
Sbjct:  965 ESIVKPKVLVKEAEKKLPSDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 1163
The following BLAST results are available for this feature:
BLAST of TCONS_00052180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTN48.075e-3236.18Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2[more]
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