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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052198 ID=TCONS_00052198|Name=TCONS_00052198|organism=Clytia hemisphaerica|type=transcript|length=882bp
NNAGAGAAGTCTGaacttttcaaccaatcacaAGACGTTGGAAGCGAATT
CCAATACAGATGTATCAACTGTCGTGGCTGTAAATCCTGTAAGGAACTTT
CAACAACTGACGAGGTCATGAGTGTACAAGAAGAAGTTGAACAACATGTT
ATCAATGAATCAATCAATGTTGATGTTTGCAAGCAAAATTCGACTGCATT
TTTACCACTTCTACATGACCCATCATTATATCTTTCTCCAAATAGAAAGA
TTGCACTCCAGATCTACAACCAACAACTGAGACGACTTTCAAAGTACTCC
AAAGACAAGGAAGATGTCCTCAACTCAGAGCAAAAACTTCAAACTCTTGG
CTACGTGGATTATTTAAAAAACCTCAGCCCAGATGTACAACATACACTTC
GAAACACCAATATCAACAACTTTATTCCATGGCGCGCAGTATGGAAGGAG
AACTCGGTGTCAACTCCGTGCCGTATTGTGTTCGACGCTTCAATGAAGAC
CGGAAGTGGCTTCTCACTCAACGACATCATTGCAAAAGGAAGGAATAACA
CTAATAAGCTCTTAGAAATTTTCCTGCGGTGGAGGGGACACAAGGTTGGT
ATCCACACAGATGTTGCTAAAATGTATAACACCATACAACTCGATCAAAC
TCACTGGTGTCTCCAACGTTATCTGTGGGAAGAAAATCTTAACCCAGACA
AACCGCCCGAAGAGAAAGTCATAAAAACCCTTATCTATGGCGTAAAATCA
AGTGGGAACCAGGCGGAGCATGCGCTTCGTGAAActgcaaaaattttcaa
agaccaGTACCCGGAAGTTCACAAGATCATAACCGATGATGTATACGTAG
ATGACTGCATAACCGGTCATCAATCACAGTCA Run BLAST on NCBI protein sequence of TCONS_00052198-protein >TCONS_00052198-protein ID=TCONS_00052198-protein|Name=TCONS_00052198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
XEKSELFNQSQDVGSEFQYRCINCRGCKSCKELSTTDEVMSVQEEVEQHV
INESINVDVCKQNSTAFLPLLHDPSLYLSPNRKIALQIYNQQLRRLSKYS
KDKEDVLNSEQKLQTLGYVDYLKNLSPDVQHTLRNTNINNFIPWRAVWKE
NSVSTPCRIVFDASMKTGSGFSLNDIIAKGRNNTNKLLEIFLRWRGHKVG
IHTDVAKMYNTIQLDQTHWCLQRYLWEENLNPDKPPEEKVIKTLIYGVKS
SGNQAEHALRETAKIFKDQYPEVHKIITDDVYVDDCITGHQSQS Run BLAST on NCBI transcript from alignment at scaffold_212:108686..109567 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052198 ID=TCONS_00052198|Name=TCONS_00052198|organism=Clytia hemisphaerica|type=transcript|length=882bp|location=Sequence derived from alignment at scaffold_212:108686..109567 (Clytia hemisphaerica)
TGACTGTGATTGATGACCGGTTATGCAGTCATCTACGTATACATCATCGG
TTATGATCTTGTGAACTTCCGGGTACtggtctttgaaaatttttgcagTT
TCACGAAGCGCATGCTCCGCCTGGTTCCCACTTGATTTTACGCCATAGAT
AAGGGTTTTTATGACTTTCTCTTCGGGCGGTTTGTCTGGGTTAAGATTTT
CTTCCCACAGATAACGTTGGAGACACCAGTGAGTTTGATCGAGTTGTATG
GTGTTATACATTTTAGCAACATCTGTGTGGATACCAACCTTGTGTCCCCT
CCACCGCAGGAAAATTTCTAAGAGCTTATTAGTGTTATTCCTTCCTTTTG
CAATGATGTCGTTGAGTGAGAAGCCACTTCCGGTCTTCATTGAAGCGTCG
AACACAATACGGCACGGAGTTGACACCGAGTTCTCCTTCCATACTGCGCG
CCATGGAATAAAGTTGTTGATATTGGTGTTTCGAAGTGTATGTTGTACAT
CTGGGCTGAGGTTTTTTAAATAATCCACGTAGCCAAGAGTTTGAAGTTTT
TGCTCTGAGTTGAGGACATCTTCCTTGTCTTTGGAGTACTTTGAAAGTCG
TCTCAGTTGTTGGTTGTAGATCTGGAGTGCAATCTTTCTATTTGGAGAAA
GATATAATGATGGGTCATGTAGAAGTGGTAAAAATGCAGTCGAATTTTGC
TTGCAAACATCAACATTGATTGATTCATTGATAACATGTTGTTCAACTTC
TTCTTGTACACTCATGACCTCGTCAGTTGTTGAAAGTTCCTTACAGGATT
TACAGCCACGACAGTTGATACATCTGTATTGGAATTCGCTTCCAACGTCT
tgtgattggttgaaaagttCAGACTTCTCTNN Coding sequence (CDS) from alignment at scaffold_212:108686..109567 >TCONS_00052198 ID=TCONS_00052198|Name=TCONS_00052198|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_212:108686..109567 (Clytia hemisphaerica)
TGACTGTGATTGATGACCGGTTATGCAGTCATCTACGTATACATCATCGG
TTATGATCTTGTGAACTTCCGGGTACtggtctttgaaaatttttgcagTT
TCACGAAGCGCATGCTCCGCCTGGTTCCCACTTGATTTTACGCCATAGAT
AAGGGTTTTTATGACTTTCTCTTCGGGCGGTTTGTCTGGGTTAAGATTTT
CTTCCCACAGATAACGTTGGAGACACCAGTGAGTTTGATCGAGTTGTATG
GTGTTATACATTTTAGCAACATCTGTGTGGATACCAACCTTGTGTCCCCT
CCACCGCAGGAAAATTTCTAAGAGCTTATTAGTGTTATTCCTTCCTTTTG
CAATGATGTCGTTGAGTGAGAAGCCACTTCCGGTCTTCATTGAAGCGTCG
AACACAATACGGCACGGAGTTGACACCGAGTTCTCCTTCCATACTGCGCG
CCATGGAATAAAGTTGTTGATATTGGTGTTTCGAAGTGTATGTTGTACAT
CTGGGCTGAGGTTTTTTAAATAATCCACGTAGCCAAGAGTTTGAAGTTTT
TGCTCTGAGTTGAGGACATCTTCCTTGTCTTTGGAGTACTTTGAAAGTCG
TCTCAGTTGTTGGTTGTAGATCTGGAGTGCAATCTTTCTATTTGGAGAAA
GATATAATGATGGGTCATGTAGAAGTGGTAAAAATGCAGTCGAATTTTGC
TTGCAAACATCAACATTGATTGATTCATTGATAACATGTTGTTCAACTTC
TTCTTGTACACTCATGACCTCGTCAGTTGTTGAAAGTTCCTTACAGGATT
TACAGCCACGACAGTTGATACATCTGTATTGGAATTCGCTTCCAACGTCT
tgtgattggttgaaaagttCAGACTTCTCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052198-exon-scaffold_212-1491911889:108686..109567 | TCONS_00052198-exon-scaffold_212-1491911889:108686..109567 | Clytia hemisphaerica | exon |
| TCONS_00052198-exon-scaffold_212-1510915933:108686..109567 | TCONS_00052198-exon-scaffold_212-1510915933:108686..109567 | Clytia hemisphaerica | exon |
| TCONS_00052198-exon-scaffold_212-1575043694:108686..109567 | TCONS_00052198-exon-scaffold_212-1575043694:108686..109567 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_212 | supercontig | scaffold_212:108686..109567 . |
Blast
The following BLAST results are available for this feature:
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