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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052199 ID=TCONS_00052199|Name=TCONS_00052199|organism=Clytia hemisphaerica|type=transcript|length=1575bp
NNTGCAGCCACTCATGATATTGAAAATGAACTTTACTACAGTAACGCCTT
GAACCAAGTCAGTGAAAAACTTGGTGATCAACGAATGATGAGATGGCTTA
CTCTTACTTGTGAAGAACCAAAGAGCGGCAAGTACAAGTGGAAACAACTG
ATTGATTTTCTGGAGAAAGAGATGAAAGTTCACCAACAGAAAGCTGCCAt
ccaaaaatcaaacaaacaacCTGACACCGAAAAACCCAAAGGCGGAGGTG
GTAAAGGAGGTCGATCAACTTACAACACGTTTCCTGACCAATCTTCATGC
TACATCTGTGGAGCAACAGATTATACACAAACCAATGGTCCTAGTGGAAC
AAAGCTAGTACAATATTTCTCCTGCAAAGTTTTCGTCGAAATGACTCCAG
CTAAGCGATTCAAAACCTTGCAACAGAAGAATCTCTGCTACCAGTGTCTC
TTCCCCGGGGCACGACGTGACCAAGGCAAACACAAAGAGGGTCAATGTCA
ACAGACGTTCATATGCCAGCATCCTTACCATCAACCTTTCAAGCCAAGGA
AGCATATCCTCGTTTGTGAAGAACATAAGACGAACCAAATAAACCTGGAC
ATCCTAGAACATTACAGAACCAGATGCATCATCCGACAACCTGTGCCAGC
CTACTCTAAAGAAATAACGCTGACCTTCCATTCTGCTAACGATTCAAACG
ATGAGGATCCAGAAGCAATCTTCATGCTACAACCAATCTCTGTCAATGGA
AAACAATTCACCATATTCTATGACTCTGGGTGCTACGACTTCATTGTACG
TCATCACGCAANTTCACCATATTCTATGACTCTGGGTGCTACGACTTCAT
TGTACGTCATCATGCAATCAAAAAACTTGGCAACCGAGCAAATCAACAAT
ACGTTGGTCCTATCACAATGGGCGGGGTTGGTGGCATATCAAGTCAAAGC
AAGCACGGCACCTACAAAATTGATCTTCCACTCATTGATGGAACAGATGC
AACTCTCGTTGGACCATGCTTGGACCAAATCACTCAGAAGTTTCCGACAT
ACAAATTGGACGGTGAAGTCATCAACGACATTCGTAAAGATTATGCCAAA
TCTGGTGGTGATCCATGCAATCTTCCTCTGGTCCCAAAACAAGTTGGTGG
TCATACAGATTTTATGATTGGCATCAAATATTCAAGATACTTCCCGGAGG
AGGTATTCAAGATGCCATCAGGACTGACAATTTACAGATCNTAATCTTCC
TCTGGTCCCAAAACAAGTTGGCGGTCATACAGATTTTATGGTTGGCATCA
AATATTCAAGATACTTCCCGGAGGAGGTATTCAAGATGCCATCAGGACTG
ACGATTTACAGATCATGCTTCAAAAGTCCAGACGGATCAACCGGCGTTAT
TGGTGGTCCACACCCTGTCTTCAACAACATCAAAGATCACCATTTCAGCA
CCAATAAATTCATCAATGATCAACACGAACTGTTTAAGTTGGGATATCAT
GTCAATCCTGACCTTCACCTGCTCGGATACACCAACAAGAATACCGACAT
CTTCATTACATCAAACTCAGCCATT Run BLAST on NCBI protein sequence of TCONS_00052199-protein >TCONS_00052199-protein ID=TCONS_00052199-protein|Name=TCONS_00052199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
XAATHDIENELYYSNALNQVSEKLGDQRMMRWLTLTCEEPKSGKYKWKQL
IDFLEKEMKVHQQKAAIQKSNKQPDTEKPKGGGGKGGRSTYNTFPDQSSC
YICGATDYTQTNGPSGTKLVQYFSCKVFVEMTPAKRFKTLQQKNLCYQCL
FPGARRDQGKHKEGQCQQTFICQHPYHQPFKPRKHILVCEEHKTNQINLD
ILEHYRTRCIIRQPVPAYSKEITLTFHSANDSNDEDPEAIFMLQPISVNG
KQFTIFYDSGCYDFIVRHHAXSPYSMTLGATTSLYVIMQSKNLATEQINN
TLVLSQWAGLVAYQVKASTAPTKLIFHSLMEQMQLSLDHAWTKSLRSFRH
TNWTVKSSTTFVKIMPNLVVIHAIFLWSQNKLVVIQIL Run BLAST on NCBI transcript from alignment at scaffold_212:109705..111279 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052199 ID=TCONS_00052199|Name=TCONS_00052199|organism=Clytia hemisphaerica|type=transcript|length=1575bp|location=Sequence derived from alignment at scaffold_212:109705..111279 (Clytia hemisphaerica)
AATGGCTGAGTTTGATGTAATGAAGATGTCGGTATTCTTGTTGGTGTATC
CGAGCAGGTGAAGGTCAGGATTGACATGATATCCCAACTTAAACAGTTCG
TGTTGATCATTGATGAATTTATTGGTGCTGAAATGGTGATCTTTGATGTT
GTTGAAGACAGGGTGTGGACCACCAATAACGCCGGTTGATCCGTCTGGAC
TTTTGAAGCATGATCTGTAAATCGTCAGTCCTGATGGCATCTTGAATACC
TCCTCCGGGAAGTATCTTGAATATTTGATGCCAACCATAAAATCTGTATG
ACCGCCAACTTGTTTTGGGACCAGAGGAAGATTANGATCTGTAAATTGTC
AGTCCTGATGGCATCTTGAATACCTCCTCCGGGAAGTATCTTGAATATTT
GATGCCAATCATAAAATCTGTATGACCACCAACTTGTTTTGGGACCAGAG
GAAGATTGCATGGATCACCACCAGATTTGGCATAATCTTTACGAATGTCG
TTGATGACTTCACCGTCCAATTTGTATGTCGGAAACTTCTGAGTGATTTG
GTCCAAGCATGGTCCAACGAGAGTTGCATCTGTTCCATCAATGAGTGGAA
GATCAATTTTGTAGGTGCCGTGCTTGCTTTGACTTGATATGCCACCAACC
CCGCCCATTGTGATAGGACCAACGTATTGTTGATTTGCTCGGTTGCCAAG
TTTTTTGATTGCATGATGACGTACAATGAAGTCGTAGCACCCAGAGTCAT
AGAATATGGTGAANTTGCGTGATGACGTACAATGAAGTCGTAGCACCCAG
AGTCATAGAATATGGTGAATTGTTTTCCATTGACAGAGATTGGTTGTAGC
ATGAAGATTGCTTCTGGATCCTCATCGTTTGAATCGTTAGCAGAATGGAA
GGTCAGCGTTATTTCTTTAGAGTAGGCTGGCACAGGTTGTCGGATGATGC
ATCTGGTTCTGTAATGTTCTAGGATGTCCAGGTTTATTTGGTTCGTCTTA
TGTTCTTCACAAACGAGGATATGCTTCCTTGGCTTGAAAGGTTGATGGTA
AGGATGCTGGCATATGAACGTCTGTTGACATTGACCCTCTTTGTGTTTGC
CTTGGTCACGTCGTGCCCCGGGGAAGAGACACTGGTAGCAGAGATTCTTC
TGTTGCAAGGTTTTGAATCGCTTAGCTGGAGTCATTTCGACGAAAACTTT
GCAGGAGAAATATTGTACTAGCTTTGTTCCACTAGGACCATTGGTTTGTG
TATAATCTGTTGCTCCACAGATGTAGCATGAAGATTGGTCAGGAAACGTG
TTGTAAGTTGATCGACCTCCTTTACCACCTCCGCCTTTGGGTTTTTCGGT
GTCAGgttgtttgtttgatttttggaTGGCAGCTTTCTGTTGGTGAACTT
TCATCTCTTTCTCCAGAAAATCAATCAGTTGTTTCCACTTGTACTTGCCG
CTCTTTGGTTCTTCACAAGTAAGAGTAAGCCATCTCATCATTCGTTGATC
ACCAAGTTTTTCACTGACTTGGTTCAAGGCGTTACTGTAGTAAAGTTCAT
TTTCAATATCATGAGTGGCTGCANN Coding sequence (CDS) from alignment at scaffold_212:109705..111279 >TCONS_00052199 ID=TCONS_00052199|Name=TCONS_00052199|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_212:109705..111279 (Clytia hemisphaerica)
TCATAAAATCTGTATGACCACCAACTTGTTTTGGGACCAGAGGAAGATTG
CATGGATCACCACCAGATTTGGCATAATCTTTACGAATGTCGTTGATGAC
TTCACCGTCCAATTTGTATGTCGGAAACTTCTGAGTGATTTGGTCCAAGC
ATGGTCCAACGAGAGTTGCATCTGTTCCATCAATGAGTGGAAGATCAATT
TTGTAGGTGCCGTGCTTGCTTTGACTTGATATGCCACCAACCCCGCCCAT
TGTGATAGGACCAACGTATTGTTGATTTGCTCGGTTGCCAAGTTTTTTGA
TTGCATGATGACGTACAATGAAGTCGTAGCACCCAGAGTCATAGAATATG
GTGAANTTGCGTGATGACGTACAATGAAGTCGTAGCACCCAGAGTCATAG
AATATGGTGAATTGTTTTCCATTGACAGAGATTGGTTGTAGCATGAAGAT
TGCTTCTGGATCCTCATCGTTTGAATCGTTAGCAGAATGGAAGGTCAGCG
TTATTTCTTTAGAGTAGGCTGGCACAGGTTGTCGGATGATGCATCTGGTT
CTGTAATGTTCTAGGATGTCCAGGTTTATTTGGTTCGTCTTATGTTCTTC
ACAAACGAGGATATGCTTCCTTGGCTTGAAAGGTTGATGGTAAGGATGCT
GGCATATGAACGTCTGTTGACATTGACCCTCTTTGTGTTTGCCTTGGTCA
CGTCGTGCCCCGGGGAAGAGACACTGGTAGCAGAGATTCTTCTGTTGCAA
GGTTTTGAATCGCTTAGCTGGAGTCATTTCGACGAAAACTTTGCAGGAGA
AATATTGTACTAGCTTTGTTCCACTAGGACCATTGGTTTGTGTATAATCT
GTTGCTCCACAGATGTAGCATGAAGATTGGTCAGGAAACGTGTTGTAAGT
TGATCGACCTCCTTTACCACCTCCGCCTTTGGGTTTTTCGGTGTCAGgtt
gtttgtttgatttttggaTGGCAGCTTTCTGTTGGTGAACTTTCATCTCT
TTCTCCAGAAAATCAATCAGTTGTTTCCACTTGTACTTGCCGCTCTTTGG
TTCTTCACAAGTAAGAGTAAGCCATCTCATCATTCGTTGATCACCAAGTT
TTTCACTGACTTGGTTCAAGGCGTTACTGTAGTAAAGTTCATTTTCAATA
TCATGAGTGGCTGCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052199-exon-scaffold_212-1491911889:109705..111279 | TCONS_00052199-exon-scaffold_212-1491911889:109705..111279 | Clytia hemisphaerica | exon |
| TCONS_00052199-exon-scaffold_212-1510915933:109705..111279 | TCONS_00052199-exon-scaffold_212-1510915933:109705..111279 | Clytia hemisphaerica | exon |
| TCONS_00052199-exon-scaffold_212-1575043694:109705..111279 | TCONS_00052199-exon-scaffold_212-1575043694:109705..111279 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_212 | supercontig | scaffold_212:109705..111279 . |
Blast
The following BLAST results are available for this feature:
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