TCONS_00052200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052200
Unique NameTCONS_00052200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052200 ID=TCONS_00052200|Name=TCONS_00052200|organism=Clytia hemisphaerica|type=transcript|length=537bp
AATTTTTGTGCTAGAAATGCTTTATTTACTTAGAATGACTTAAATTAATA
AGATAAACAattataatatatatatttaaaaaaaatacaagaattATATA
GTAGGAGATTAAGTATAATTTCGGGCTTCGGTATAGGGATAGGGGGCTAT
TTCttacaaaatttgacattgtaaagcattattcgaatttaagaaTTAGG
AATTAGGTTGCGGTTCAAGAAATTGTATTCgtataaaaaatgatgaacta
aCTAACAAAATAAGTCAAACAATTACTTCTTCAGTTGTATTTCGTGCCTC
TTTTACCGAGGGTTCTCCAACTTTCCGTTCAAAAGATCTGTATTTTCCCC
TCATTGAAGATGTTTCTTTGGTTGTGTTGTCGAACAATCAActtcctttt
ctttttaacGTTTATATATTTGTCTTCTATGAGACGATGTTCATTTTGAT
AAGTTTTTTTCCACACGTCTATGACATTGCAGAGCATTGATGTTTCGTCT
CTCTCCGTCGATCTCGCAATACGTTTTTCGATTTTct
Run BLAST on NCBI

transcript from alignment at scaffold_212:160315..160851

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052200 ID=TCONS_00052200|Name=TCONS_00052200|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at scaffold_212:160315..160851 (Clytia hemisphaerica)
agAAAATCGAAAAACGTATTGCGAGATCGACGGAGAGAGACGAAACATCA
ATGCTCTGCAATGTCATAGACGTGTGGAAAAAAACTTATCAAAATGAACA
TCGTCTCATAGAAGACAAATATATAAACgttaaaaagaaaaggaagTTGA
TTGTTCGACAACACAACCAAAGAAACATCTTCAATGAGGGGAAAATACAG
ATCTTTTGAACGGAAAGTTGGAGAACCCTCGGTAAAAGAGGCACGAAATA
CAACTGAAGAAGTAATTGTTTGACTTATTTTGTTAGttagttcatcattt
tttatacGAATACAATTTCTTGAACCGCAACCTAATTCCTAAttcttaaa
ttcgaataatgctttacaatgtcaaattttgtaaGAAATAGCCCCCTATC
CCTATACCGAAGCCCGAAATTATACTTAATCTCCTACTATATaattcttg
tattttttttaaatatatatattataatTGTTTATCTTATTAATTTAAGT
CATTCTAAGTAAATAAAGCATTTCTAGCACAAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033052XLOC_033052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052200-exon-scaffold_212-1491911889:160315..160851TCONS_00052200-exon-scaffold_212-1491911889:160315..160851Clytia hemisphaericaexon
TCONS_00052200-exon-scaffold_212-1510915933:160315..160851TCONS_00052200-exon-scaffold_212-1510915933:160315..160851Clytia hemisphaericaexon
TCONS_00052200-exon-scaffold_212-1575043694:160315..160851TCONS_00052200-exon-scaffold_212-1575043694:160315..160851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:160315..160851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.91099	5.06717	0.294708	0	0.0932258	0.125939	0	0	0.0719364	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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