TCONS_00052364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052364
Unique NameTCONS_00052364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052364 ID=TCONS_00052364|Name=TCONS_00052364|organism=Clytia hemisphaerica|type=transcript|length=1115bp
GAATTATTTTGCTAATTACCACTGATATAAGGAGATAAAGATCTTTCTTG
TGAGATATTTTATGTGTTGGTTTTATCGTTGCTGCGAAAAATGTCTGAAG
AAACTGATCTGTTTCTATCCCATGATTGGGGTGAAGATGGAAAAACGAAC
CATGATCGAGTGAAAAAAATCAACGAAGCCATCAAAGAGTTGGGTTATAT
CACGTGGTTTGACAATGAGCGAATGGTCGGCAACATGAGAGAACAAATGG
CAAAAGGAATTGATAATACCAAATGTTTTATCGCATTTCTGACGAAGAGA
TATCATGATAAAGTAGTCTTAGGTTCGGATACCGATAATTGTCGAACAGA
GTTCGATTACGCTAGCTCGACGGTTCCCATGGTGGCTGTAGTTCTTGATG
CCTCGATGAGAAACCCTGGAGAGTGGAAAGGAAACATTGGTTTAACACTG
AAGAAGTTTATGTATATTGACATGTCAGGCGATATTGAGACCCCTCTTAC
CTGTCTAAACAACTCAAACTTCTTACAAATAATTTGGATGTCAAGGGTAT
CTTCCCAAATAATCAAGTGCAAAACTCTGGTGCTACCTCGCAGTCGATTT
CCAGTTCAAAGCAAGCCTTGGCaccaaatctaaaaaaaataagttatAAT
TCAAAACCAGCTACGCAGCAACTTACGGCTTCGAGCTTGAATGGTGCCAC
CTGTTCATCTGATTGTGTAATTCAGCCTCAAGATGAACCTTTGATGGAAA
GCACTCATCTTTTGTCGTAAGCTCAAGTAAAATACCTCTAGAGATAATAG
AGGAAGACCTTGGACTTTCCTCGGCTCAGTACTATTTGACCTACCAAGAC
AAGGAGTTAAAATACAAAGATATATTGTTAGAACAAATACTAATTGAATC
GAATTTTCGTTTAGTTTTGCGAAAACGATCTTTTTCAATCTTcgtcaaat
tcaaaatgaaagcCATCACTTTGGAAGTCGAACCAAATGATACTATCGAC
AACgtcaaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACA
ACGTTTGATCTTCGCTGGCAAAGAATTAGAGGATGGCCGAACCCTTTCCG
ACTACAACATCCAAA
Run BLAST on NCBI

protein sequence of TCONS_00052364-protein

>TCONS_00052364-protein ID=TCONS_00052364-protein|Name=TCONS_00052364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSEETDLFLSHDWGEDGKTNHDRVKKINEAIKELGYITWFDNERMVGNMR
EQMAKGIDNTKCFIAFLTKRYHDKVVLGSDTDNCRTEFDYASSTVPMVAV
VLDASMRNPGEWKGNIGLTLKKFMYIDMSGDIETPLTCLNNSNFLQIIWM
SRVSSQIIKCKTLVLPRSRFPVQSKPWHQI
Run BLAST on NCBI

transcript from alignment at scaffold_213:712238..714203-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052364 ID=TCONS_00052364|Name=TCONS_00052364|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at scaffold_213:712238..714203- (Clytia hemisphaerica)
GAATTATTTTGCTAATTACCACTGATATAAGGAGATAAAGATCTTTCTTG TGAGATATTTTATGTGTTGGTTTTATCGTTGCTGCGAAAAATGTCTGAAG AAACTGATCTGTTTCTATCCCATGATTGGGGTGAAGATGGAAAAACGAAC CATGATCGAGTGAAAAAAATCAACGAAGCCATCAAAGAGTTGGGTTATAT CACGTGGTTTGACAATGAGCGAATGGTCGGCAACATGAGAGAACAAATGG CAAAAGGAATTGATAATACCAAATGTTTTATCGCATTTCTGACGAAGAGA TATCATGATAAAGTAGTCTTAGGTTCGGATACCGATAATTGTCGAACAGA GTTCGATTACGCTAGCTCGACGGTTCCCATGGTGGCTGTAGTTCTTGATG CCTCGATGAGAAACCCTGGAGAGTGGAAAGGAAACATTGGTTTAACACTG AAGAAGTTTATGTATATTGACATGTCAGGCGATATTGAGACCCCTCTTAC CTGTCTAAACAACTCAAACTTCTTACAAATAATTTGGATGTCAAGGGTAT CTTCCCAAATAATCAAGGTATGTGTTTTTGTACGACAATATTATTTGCTT TGCTATTTTGTTACAATGGTCTCTTTGAGTTTTACGATTGACTTTCAAGC GGGGCGTGGAATTTCCGAGTTATTCTTTTCTGAGTTATTTTGCGCATGAC GTCATAATTTTATTTTTGTGACGTCATTATGACGTAATCTCAAGAATCAT AACTTTTTTCGAGCTTTTAACTTTTCGAATTATTTGGTGTTATTTAAGTA ATAAGGTTTTTTTCGTGCCTTTAACTTGACGCCATTTATTAACTCGCAAA TTAACTCGGGAATTCCAGGCCCCCTTTCAAGCTTTATGTGAACTTCGTCG GCTATATTTATATTGTTTGATATCATATACTCCTTTTTTTTCTTTAACAG TGCAAAACTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCC TTGGCACCAAATCTAAAAAAAATAAGTTATAATTCAAAACCAGCTACGCA GCAACTTACGGCTTCGAGCTTGAATGGTGCCACCTGTTCATCTGATTGTG TAATTCAGCCTCAAGATGAACCTTTGATGGAAAGCACTCATCTTTTGTCG TAAGCTCAAGTAAAATACCTCTAGAGATAATAGAGGAAGACCTTGGACTT TCCTCGGCTCAGTACTATTTGACCTACCAAGACAAGGAGTTAAAATACAA AGATATATTGTTAGAACAAATACTAATTGAATCGAATTTTCGTTTAGTTT TGCGAAAACGATCTTTTTCAATCTTCGTCAAATTCAAAATGAAAGCCATC ACTTTGGAAGTCGAACCAAATGATACTATCGACAACGTCAAAGCCAAAAT TCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTG GCAAAGAATTAGAGGATGGCCGAACCCTTTCCGACTACAACATCCAAAAG GAATCCACCCTTAACTTGGTCTTGCCTTCCGTTCCCATTCGGTCACTGAC AATCTTTGTCAAAACTTTATCTGGTAAAACCATTACTTTAAAAGTCGAAC CAAATGATACTATCAACAACTTCAAAGCCAAAATTCAAGATAAAGAAGGA ATCCCTCCAGATCAACAACGTTTGATCTTCTCTGGCAGAAAATTAGAGGA TGGCCGAACCCTTTCCGACTACAACATCCAAAAAGAATCAACCCTTCACT TGGTCTTACCTTCCGTTCGCATTTGGTCAATGACAATCTTTGTCAAAACC TTATCTGGTAAAACCATTACTTTAGAAGTCGAACCAAATGATACTATCGA CAACGTCAAAGCCAAAATTCAAAATAAAGAAGGAATCCCTCCAGATCAAC AACGTTTGATCTTCTCTGGCAGAAAATTAGAGGATGGCCGAACCCTTTCC GACTACAACATCCAAA

Coding sequence (CDS) from alignment at scaffold_213:712238..714203-

>TCONS_00052364 ID=TCONS_00052364|Name=TCONS_00052364|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_213:712238..714203- (Clytia hemisphaerica)
TGCAAAACTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCC
TTGGCACCAAATCTAAATGTCTGAAGAAACTGATCTGTTTCTATCCCATG
ATTGGGGTGAAGATGGAAAAACGAACCATGATCGAGTGAAAAAAATCAAC
GAAGCCATCAAAGAGTTGGGTTATATCACGTGGTTTGACAATGAGCGAAT
GGTCGGCAACATGAGAGAACAAATGGCAAAAGGAATTGATAATACCAAAT
GTTTTATCGCATTTCTGACGAAGAGATATCATGATAAAGTAGTCTTAGGT
TCGGATACCGATAATTGTCGAACAGAGTTCGATTACGCTAGCTCGACGGT
TCCCATGGTGGCTGTAGTTCTTGATGCCTCGATGAGAAACCCTGGAGAGT
GGAAAGGAAACATTGGTTTAACACTGAAGAAGTTTATGTATATTGACATG
TCAGGCGATATTGAGACCCCTCTTACCTGTCTAAACAACTCAAACTTCTT
ACAAATAATTTGGATGTCAAGGGTATCTTCCCAAATAATCAAGTGCAAAA
CTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCCTTGGCAC
CAAATCTAAATGTCTGAAGAAACTGATCTGTTTCTATCCCATGATTGGGG
TGAAGATGGAAAAACGAACCATGATCGAGTGAAAAAAATCAACGAAGCCA
TCAAAGAGTTGGGTTATATCACGTGGTTTGACAATGAGCGAATGGTCGGC
AACATGAGAGAACAAATGGCAAAAGGAATTGATAATACCAAATGTTTTAT
CGCATTTCTGACGAAGAGATATCATGATAAAGTAGTCTTAGGTTCGGATA
CCGATAATTGTCGAACAGAGTTCGATTACGCTAGCTCGACGGTTCCCATG
GTGGCTGTAGTTCTTGATGCCTCGATGAGAAACCCTGGAGAGTGGAAAGG
AAACATTGGTTTAACACTGAAGAAGTTTATGTATATTGACATGTCAGGCG
ATATTGAGACCCCTCTTACCTGTCTAAACAACTCAAACTTCTTACAAATA
ATTTGGATGTCAAGGGTATCTTCCCAAATAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033105XLOC_033105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052364-proteinTCONS_00052364-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052364-exon-scaffold_213-1575043694:713637..714203TCONS_00052364-exon-scaffold_213-1575043694:713637..714203Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1575043694:712713..713253TCONS_00052364-exon-scaffold_213-1575043694:712713..713253Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1575043694:712238..712244TCONS_00052364-exon-scaffold_213-1575043694:712238..712244Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1510915933:713637..714203TCONS_00052364-exon-scaffold_213-1510915933:713637..714203Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1510915933:712713..713253TCONS_00052364-exon-scaffold_213-1510915933:712713..713253Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1510915933:712238..712244TCONS_00052364-exon-scaffold_213-1510915933:712238..712244Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1491911889:713637..714203TCONS_00052364-exon-scaffold_213-1491911889:713637..714203Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1491911889:712713..713253TCONS_00052364-exon-scaffold_213-1491911889:712713..713253Clytia hemisphaericaexon
TCONS_00052364-exon-scaffold_213-1491911889:712238..712244TCONS_00052364-exon-scaffold_213-1491911889:712238..712244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:712238..714203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0224649 0.0219099 0.0252484 0 1.16729 0.991686 1.14743 1.33183 0.0833401 1.00258 1.80607 0.93147 0.185192 0.382825 8.88996e-07 0 1.21871 0.9338 1.76745 2.80674 0.356407 0.357892 0.10398 0.215348 0.25513 0.2715 0.315504 0.167484 0.0501814 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00052364 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.556e-29
Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  797 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 138          

HSP 2 Score: 115.161 bits (287), Expect = 1.556e-29
Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  797 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct:  106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 214          

HSP 3 Score: 105.531 bits (262), Expect = 3.869e-26
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query:  932 FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
              IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62          
The following BLAST results are available for this feature:
BLAST of TCONS_00052364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB1.556e-2961.47Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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