TCONS_00052508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052508
Unique NameTCONS_00052508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052508 ID=TCONS_00052508|Name=TCONS_00052508|organism=Clytia hemisphaerica|type=transcript|length=3660bp
ccattgagatctcaatagaaatttttatccccgctttGGCAAAAGGTGTC
AACATGACTGTGAGACAGAGATGTTGGGGTGACAGGGGTGTGTAATTCAC
GGTGCTCGTATTCGAATAGAGATATCGTTTACATCGGCTACCTGGATGCG
TTTTGCAACTACAGTGACTTGAGAATCTTAGAGAGATTTTGTAAGCTTTA
ATAATAACAAACTTTATCAATAACAAAGATTGCTCTCCCTTTTTTCCTCA
CCTCTTCCAAAGTTCTTTCCGAGTTCAAGTGTCCTGTGgatgtaacctga
gatcagattgtgcataccacgctgaagctctaaaggaatgtgtgaaaaca
taacaatctgacgaatatgcaatctcaaaatcgtaaggaccgcgttcgtc
taaaaggactaggaatgacaacaaagttgcgtgcattgtgtttatgaata
gggtgccgtatcagttttttgactttctggcgcacaacaagattttcgtc
agatgtataattttcaagcaacttcagaggtttaccgtgcgcgtaagaaa
aattatgaacagctgttatcagggtAATATAATCTGACTTTCTCACTATG
TCAGTATATAATAGAAAAGAGTTGTTATGTTAAATTCAAAAGTGATAACA
TTAATGGTATTTCCAACTTGTGTAACTTATGGCATGTCTATAAAGGACTC
TcatagacccggtaggattttttagCAAGTGGGTATAAATAACAGAGGAT
TGGGGATTGAtgttcccatattttttatgactggggatttcaattatttt
gttttcaagtcaaaaaattcagtggggatggaaaaaaagcataatatttt
acagtgaggattggtttatttgattcttttcggtggggacaaaaattgta
ggttaaattttccaccggggacaatgTTTTcgccaattttttcagtggga
cGGGGTCCCATGGTAATTTATACGTCTAAAGAAACAGTAAATGTAGAATT
GTTtgtcttttttgagaaattgaagGAAAACCTGCTTGataacgtcataa
ttatttgaAATCAGGCCTCGGTTGTTCATCCGGTCTGGTACTACTCCGAT
ACCGTGGCTATTTATTACACTGTTATATAATCGAAAGGCTATCATCCTTG
AAATGAAAGTAGCAGTTCTTGGAGCAGGGATTATTGGCTCATCAACAGCC
TATAAAATTATTCAACAATTTTCcttttgtgacgtcactttgATATCAGA
TGAATTTTCACCTTCAACCACGAGCGATGGAGCAGCCGGACATTGGGAGC
CGTTTTGGTTGGGTGATACTCCTGTAGATGTGATTAAgAGTTATGCAAAG
GAAACATTTGCTTATGTcatggaaaatatcaaaaataatccCGATTCTCC
TGATATCGGATTTTTTACATGCCACGGATTTCTTCTCAGTAAAGATGAAA
CGTTTAAGaaaccattttggtATGACATCCCATCTGATTCCAGGGTATTG
AGCAAAGATGACTTGAAAATGTTTCCATCCGAGGCAAGATCTGGGATGAG
TTTCACAACAGTGTACACGGAAGGTCGGAGATTGGTTCCGTATTACATCA
AACGttttcaagagatgGGAGGAAAAGTTTTTCAGAAGTTAATCAGCTCC
TTAGATGAGTTGCCTGGTGATTTTGACGTTGTCATTAATTGTACAGGACT
TGGTTCACGCAAGTTATTTAACGACAAAAGTATGTTTCCTGTGAGGGGAC
AAGTTCTCAAGATTAAAGCACCTTGGATAAAGCAATTTGTAACCTATGAT
GTTGAGAATCAAGACCCAATGTATATCTTACCCAATCAAGAATTTGTTGT
CGTAGGAGGAACAACACAAAAAGGAGATTATAACGCCAAAATTTCGTTGA
CAGATCGGAAAGAGATTCTGGACAAAGCAACAAAATTTATTCCAAGTTTA
AAAAATGCTAAAGTTGTAGGTGAATGGGTTGGTCTTCGACCTGCAAGAGA
AAAAGGCCCtcgaattgaaattgaaaattttacccTCTCGAACAATCGAA
ACTTAAAGGTTATTCATAATTACGGACATGGAGGATGTGGAATGACAATA
CATTGGGGATGTGCTAATCACGTGGCCAAATTGTTTGATCAAGTTTGTTC
GCAGCAAAATACTCGTCTACAAACTTCCAAGTTATAAGGATGACTATGAT
AACTATGTGACACTCACCACTTTAAAACAAAGTCCATTCTACGTCAGTAt
cgttctttaaaaacaaacagGCCTCTAGTCCCTTAGTTTGCTTTCATGAG
AGCACTAAAAATGCAAGTTCTTTTCTGAAATATAATAAGGCAGACCTGGC
GGAAACGGGAAGATTGGGAAGACTTTAGCCTCCCAACTTTTgggcaaatg
agatttttttctcaaattactCGAAACGTCCGTCCTGTAACGAAAATCAA
ATGAGCGTATTGAAACAACTTTAGGAGCCACGCGATGCAGTTTTCTTTAA
CACGTCCTTGCTGCCCGGGTGAAGGCCCGGGAGGGGGGGATACTCGTATG
GTCCGACATACGGTAtgtgtgccgcccttaagggtaggtttttcgagacc
ctcgaaAAGCACTGTAAGAGTGTACTTCTGATAGAGTGTACTACAAGGGT
CTTATTTTAGCTGGATACATTATataagggtgtgtttggggactACTGAA
TTACAAGTCACATTTTCAGGTGTGTTAGCAAAATAAAGTATGCACTCAGG
TAAATAAAGGCACGTCCAAATTTACCTTAATTTTTCATcgccgtttccac
ttgtcaaaTCTTCTCACTTTATACATCGCAATAAGCATATTACAATGTAG
ATCACTAGAATGactgtgccataattaattttttacccaaaaaaaaagat
attgggcaaaaacaaaaaaaatgacgATGACGTcaataaaacttgttttt
tttttaataactccTGTTTGGCTGATGGAAGAAATATATAATccggacca
aagttgcacattGTTTTACATAAGatgttttgttaaattttgctgacgtg
AGCAGAAAtaagcaaaatacgaaattttgcaataaagtgttgatgtcaga
aaaatttcaaattatttttttttcaaataatataaaatagaTCACCTCAT
AATATATTTGAAATGGTTAATTGGTCAACTAGTTTTATAGCAAATAGtgt
aattataatttttttttttttttgaaaatgcatAAGTAGATAAGGATTTG
TACaggaatcatttttaagaataaatttcaactttttttacatCAAGAAT
TTATTGTGGTataaactaaaaaataaaaaaataatcaaaaacaaCCCCTT
CCCCCAAACCCGGTGGGACAAAAGCCGGCAGAAATATCGTCCCCAAATTC
AAATCCAACTGTTGTCTCcgctgagaaaataaaataatgaaatccTCACA
GCAAAATGTTTAGGTTTTTCGATCCGcactaaattttcagatttgaaaac
aatggattTCAAATCCCAGCCATTATAATACATTggaatatcaatctcca
tcgaTTTTCAATACGTTAATTTTACCTCAAACTTgctgaaaaaatcttac
cgggtctgtgagagaAGAGGgtgttcaaaaaatcatcacAACGTCAACTT
ACTTTGTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_217:42786..53904+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052508 ID=TCONS_00052508|Name=TCONS_00052508|organism=Clytia hemisphaerica|type=transcript|length=11119bp|location=Sequence derived from alignment at scaffold_217:42786..53904+ (Clytia hemisphaerica)
ccattgagatctcaatagaaatttttatccccgctttGGCAAAAGGTGTC
AACATGACTGTGAGACAGAGATGTTGGGGTGACAGGGGTGTGTAATTCAC
GGTGCTCGTATTCGAATAGAGATATCGTTTACATCGGCTACCTGGATGCG
TTTTGCAACTACAGTGACTTGAGAATCTTAGAGAGATTTTGTAAGCTTTA
ATAATAACAAACTTTATCAATAACAAAGATTGCTCTCCCTTTTTTCCTCA
CCTCTTCCAAAGTTCTTTCCGAGTTCAAGTGTCCTGTGgatgtaacctga
gatcagattgtgcataccacgctgaagctctaaaggaatgtgtgaaaaca
taacaatctgacgaatatgcaatctcaaaatcgtaaggaccgcgttcgtc
taaaaggactaggaatgacaacaaagttgcgtgcattgtgtttatgaata
gggtgccgtatcagttttttgactttctggcgcacaacaagattttcgtc
agatgtataattttcaagcaacttcagaggtttaccgtgcgcgtaagaaa
aattatgaacagctgttatcagggtAATATAATCTGACTTTCTCACTATG
TCAGTATATAATAGAAAAGAGTTGTTATGTTAAATTCAAAAGTGATAACA
TTAATGGTATTTCCAACTTGTGTAACTTATGGCATGTCTATAAAGGACTC
TcatagacccggtaggattttttagCAAGTGGGTATAAATAACAGAGGAT
TGGGGATTGAtgttcccatattttttatgactggggatttcaattatttt
gttttcaagtcaaaaaattcagtggggatggaaaaaaagcataatatttt
acagtgaggattggtttatttgattcttttcggtggggacaaaaattgta
ggttaaattttccaccggggacaatgTTTTcgccaattttttcagtggga
cGGGGTCCCATGGTAATTTATACGTCTAAAGAAACAGTAAATGTAGAATT
GTTtgtcttttttgagaaattgaagGAAAACCTGCTTGataacgtcataa
ttatttgaAATCAGGCCTCGGTTGTTCATCCGGTCTGGTACTACTCCGAT
ACCGTGGCTATTTATTACACTGTTATATAATCGAAAGGCTATCATCCTTG
AAATGAAAGTAGCAGTTCTTGGAGCAGGGATTATTGGCTCATCAACAGCC
TATAAAATTATTCAACAATTTTCcttttgtgacgtcactttgATATCAGA
TGAATTTTCACCTTCAACCACGAGCGATGGAGCAGCCGGACATTGGGAGC
CGTTTTGGCTGGGTAATACTCCTGTAAATNTGATGGGGCAGCCGGACATT
GGGAGCCGTTTTGGTTGGGTGATACTCCTGTAGATGTGATTAAGTAAGTT
CTTCTGTTTTATTTTATCTCAAGAACCACCCCTGTTTCAACtgttttgaa
actttgtgacagCTAGGCCATCAGCATTGACATTATGGTCTAAACAAATT
CGTAGGTAACATCAGGCTTTTCTTTgtcatttttgctgaaaagtataatt
cataaaataaaaaagggttcatttcattgaatttttgtttatttttatag
gAGTTATGCAAAGGAAACATTTGCTTATGTcatggaaaatatcaaaaata
atccCGATTCTCCTGATATCGGATTTTTTACATGCCACGGATTTCTTCTC
AGTAAAGATGAAACGTTTAAGGTATTGATGGTATCGAAAAATTGACTTAG
ACATGCgataaataaaacttttactGTCCGTCTCCACAGGTtaaatttca
gagaaagctaAACTGTGGTACTCACAGTGCTGAATTTGCGCTGAGTAgct
atcccagctggcacacaacgttgtttaaacgtttatctaacgttcacaac
gtccatatcacgttagatgaacgttaaaacaacgttgtgtgccagctggg
atcatAGTAACTTTATTTTAGGCTATTTGAGATACAAATTTTGAGATCAA
TGTTCAAACAACGGAAGATCGTGTTCATCTAAAGTTTTTCTCatgctttt
tgttttttttagaaaccattttggtATGACATCCCATCTGATTCCAGGGT
ATTGAGCAAAGATGACTTGAAAATGTTTCCATCCGAGGCAAGGTACCTTA
GCATGTGGTGTTACTATTTacatacccccttctcacagacccattggGAA
CCCTTCACACtgaaaaaattggtcaaaatatcgtccccagtggaaaacta
taccctaatttttgtccccgctgaagaTAATCATATAAACaaatccccac
tgaaaaatattatgttatttttccatccccattgaattCTCTGGCtggaa
aacaatggaattcaaatccccagccttaaaaaacatgggaatatcaatct
ctATCGAGTTTTAGTATGTTTTTTTACCTGCtcgctgataaaatcccacc
gggtctgtgagaaggaggtgtattTACAAAATCCATATTACGGTAAATAC
ACAACTAGATTTTacactagtcatagctttcactaaatgcccccacataa
agatcatgtcatgcacttataaagcttttaatgctttaaagattaaagca
ttaaaaataatcagCAATAATTGaatgatttaattattgattgattggtt
gattgatttgttgattgattgattgattgattgattgaggcatttgcttg
aaaaaaaatatattccattaacaaaatacttgaagaattcaggcagcttg
ataatttaataaaatttaaaaatttaagtaaaagctggaaaagcttttca
aaaatatatttaaaaaattatggtatcattagctcACTAGCTTACATATT
atctttcacatctcctgtttgtttttttctcctagtttctttcttacaac
aatatgtGTCATGATTAATTATTATTCATAGACCTTTTCTGGTAATGTCA
CAggcatcttagattgtaggcaaaataaatcaacaaggtaccaatcagaa
atagcttgtttatttCATTgcggctgctatatttcaacaattctctattg
ctactttgcctagtAAACAATAgccaagaggatactgcgtataaaattta
tcaaaaagttctgcgccatgtTAAATTGGGTTAAGGCTCGGGCTCCACAT
GCGTACGCTGTGTTTGCACTTCTCAAGATACTTTTTcctgatgcaatctt
ttctccaagctgaaaggattgaggCCATTAAGATGATcacagcgcagaca
atgaagagacgtgccttcaggaagctagactttttgaatttataGCTATA
CTTTCAcattatggtgtttctgtatgactttctgtgtacctagtctaacc
accgttaaatgcctacGGGAAGGTCCATCCtgacttggaaagccagaatt
ggagctatttcaccaaaccactggagtgtaagttatttaggctatcacaa
ctgcatgaaaaagttgaacgtgcgcatcaattaaagttgaacgaatgtaa
acaaacttttttcaggtttttgaaatagatttaccacactgaaaaaaaag
tgaaaacactcgaagtgaggtaaatctattatattttgaagaccaaaaga
aagagtttgtttacattgatcatgacattcaacattcattcaatcaacca
cttttggattcaactttacatatgcatacattcaacttttttgtactttg
ccggtatcttgttttactaaattaagaaggactttctcgagttacgacca
tatgatggtatttaaagctcaagaagctctataaacaataaaggtagtta
ttaataaaataacagacaaagataaattagagtttgaacaaaaatatcaa
atgcacatttgaaaacttgagcaaatttctttaaagattccggaaaaaga
attgaaatcattgctgaagtaaACTTTTGACTATTCAGTTTTAacgacaa
gaaacaaaatttgacatacaaaacactttttccagtcaatgaaaatcagc
tcatcatcataaccagtctgccattttgtttgttttgatttgcactaCAT
ATAATATCggtgatttgcacaagtaatattgtaattcgtgctatatcata
cactgttataatTTGTAtctataacactcgcttcagcttttcaaagctta
atcaaaactaataaattgtaatatataataatggtaatagcatataatag
catataacgtaatatgaaaatatttgtcccggaaaaaaaccgagcattta
cggaagagactaactacggggatgcttgtgcgacaaaacacaaacaacaa
aatttgaagattccagtccaatatctatgcgtgaagctatgagtgcctcc
tcgtcgctacgctcctgcgggggcaaaaattCCCTCAAAATATACTCTTA
AAACGATGGTAAACTTTCTTCATTCTCATTTCGTTTTAACTACAGTTAAC
cctctccttaactcaaactgAAAGGGGAAGTCTAACTTGTTTGAAAGACA
GAAGGATTCGAACTATAGAGAATATTTTACTACACTTCTCAACTGAATGG
GACTGGAGAATCATTTCGAAtcatagaaaaattgaaaaagttcttTAATT
GCCATGTTTTGAATTAAACATCGCATTGTACAggtttgatttgtttttgt
ttgtgatTGTTTGTGGTGCTTTATTATGATTTCCTTTTGTGTTACTCAAA
TTTTACCTTCTTAAAATTATCCCTCAGATCTGGGATGAGTTTCACAACAG
TGTACACGGAAGGTCGGAGATTGGTTCCGTATTACATCAAACGGTACGCT
TATAGTGTCTTGCTTACACATTTGTACCTTTGACATTGAAGGAACTCCTa
cccataaaaaatgaaattatgtCACATTGGAAAAATACTTCGTCCTATTG
GAAAAACATTCGACGAGAATCATTTaagataaataaaatataattttgaa
tcTGTAGACAAAAAAATCCCATCCACATTGGCTTGGGTGAAGTGCTGAAG
TTTTCACAGGGTTACTAATAGAGTGTTTTCGAAACCACGACGAGAACGGC
AACGGCGACGTGATAGTGGTTTCGCCGTCGTCGTTGTCGTCGCGATTTCG
GAAACTCCTAATCAAGCCATAGTACGATAGTCCCTACGATAGAGGTGTCG
TAATTTCTGTAAAAAAGTTTTACTGGACCGACATCTTTTAGCTATATTTT
AACCTATTTTTAAGGaacaatctttaaaaatattggACAAATTAAGTACA
GTCGCaagataaaaaatgtaaaaatttgttttgaaaatatagttTTTGAT
ATAAATCTTGGCCTCAATTCTAACCATttgttgtttttagttttcaagag
atgGGAGGAAAAGTTTTTCAGAAGTTAATCAGCTCCTTAGATGAGGTAAT
AACTAACCAAAAGGTTCAATGCTGACGTTCTTCGGGGATATTTGGGGGTA
TTTAGGATATGTCTTGAGCTTACCCAAGAGTTTTCACGTTATCTGGTAGa
gagtaaataaataaatatcacACAACGAAGTTTCTTTCCCGAGAGCTTTC
TCTTTCTTCAAAACTATTCTTCCTAAAAGTTTCCCTTTTAAGGCTTTCTG
GTCCAAATGTTACTGTATACCTATTACTGTATATATCTTTAGTTGCCTGG
TGATTTTGACGTTGTCATTAATTGTACAGGACTTGGTTCACGCAAGTTAT
TTAACGACAAAAGTATGTTTCCTGTGAGGGGACAAGTTCTCAAGGTAAAT
CAAACTGAGCCTATTGGTTTTGTCCGATAGCTTTACACTGTAAAAGGCAG
GCACGGGTAAAAAATTTTGTATCCAGAGCCTCTTATAacactttttttag
attttgctgATGAACTTTGATATTAAGCGCTATCTCAGAACTATCAAAAT
GCGAGAGAAGGGAAAAAGCaatcaaagatttttcaaagtcaaCCTTGATC
TTTTTAATTAAAGgcgttttatttttacataagtgtttccgtttcatatc
agaaNGCTTTAATTAAAggcgtttttttatttttacataagtgtttccgt
ttcatatcaggacagtgtctgcctttagttacattatgctgatataagca
aaaaagatatttttcttttcctttttctgaccaatcttgcttcacatccg
tgtcaatctaatgtgaaaaagctagtaaatcaaaattgatgagtaagcaa
acgatatcactcttatttaaaaataaaacctttaattaacTTAACAGATT
AAAGCACCTTGGATAAAGCAATTTGTAACCTATGATGTTGAGAATCAAGA
CCCAATGTATATCTTACCCAAGTAAGTTTTCATACTTCCCTTCCCATCAT
TTTATCCCTCTAAATAATCTTGCATTGTAAGACACATGCGTATTTAGACT
ATGCTGTAGCCTAAAACAAATCACCTTCTAAGAAGCAatcccaaagccga
agaaaattcgtaAACGGGTTTTTTGCCAAAGAAAAGAGTTTACGgccggt
agagtttgccagtcttcgaaactctcccgccgattttttcccatataccg
ccatattttcccgcctttactatcactgtaaaggacgataacatcgtcta
atgTGTAATTTGCCGTTCTTTAAACCGTATATAGTTAATTCCCATGATAa
gcaaagaggaatgaatccgtcgtgaaaatttaaagtctgttcacgataag
tgtgcactcttttttcttttacctataacttttgaaggaattcttcaatc
tttataaatttggtatcgttagagagatatttgtgactggaacaatttga
aataaaaaaaactataaatgaagatgaaaataaagaagaaaacaatgaag
atcttgtagaaaattgctataactttcatattcactggagagattctttg
atcttaggtgggcatcactgtgaaaaaatttcactaaaatatttattcaa
tataaagttatgatgcaaagttaataagtgatcgACCTcaaaaaacatca
gaaaacagcagaaaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
GGGGTGAATTTCACCCcggctacgtgtaaccaccGCCTATTTATGTTTTT
CCAAAGTGAGTTCTTAGTTTTATGTTTAATACAGTAATGCAAACTACAAA
TTTTTCTGTTGTGTCTTTTATGGTGATTTTTCCATACCTGGTCTTACTTT
CGCCTTCCTCACGAATattgaaaataaccaaaatattGTCATCAAAGTTA
AGGTTTACAGGCAGTACCAGATTGATCAAAGTAtcttaaaaattatcaaa
acaagaTAACTACtttaaattctacttttatAAACTTTTAGTCAAGAATT
TGTTGTCGTAGGAGGAACAACACAAAAAGGAGATTATAACGCCAAAATTT
CGTTGACAGATCGGAAAGAGATTCTGGACAAAGCAACAAAATTTATTCCA
AGTTTAAAAGTAAGTTTGGTAAAACTCACGGTCTTCTAAAATAGTGTTAA
CACGTTAAGCGCAATACAGATTGTACGACTTTTGTATTGTAGtctatttt
ttttaagataagATGGAGCTTTTCTATTGTCAGAATTAGAACAAACTTCA
CTGCTAGCCAATAAATTGGCTTGCTTCGATGCAGGTTTCTCCCGGGAGGC
GGGTACTAGGTTTTCGGGATGACAggtatgtgccgcccgacttttggTGG
TCGGGAAATTATTGGGACAAAAACGGGACTTAAATGAAAAAACTcgaatt
tttgtgaattttgtgaCCCTAGTTAGGTCTATTTTACTATAAAATAGGCT
TTTGAGGGTCCCAATATAGAGTTTGAACTGTTTTTGCAACCCTTAGGGGG
GGAATGGAATTAGATTATGTGATTTTTACTACCCTTAGTGGGATTTTGAA
GATCCAAaacggcacatacccgtaccctccTTTTGCCTAGGTAACCCCGG
GGGGTTTCTCAAACCCTGTATTGAATTGGAATTTTGTAATTGGAAAAATT
CTACGCCAGAAAGCCTCATTGCATTTATTTCATTTCTAGCGTTAACATTA
ACACTAGGCACTAATTACGAAAGGCTCGAATAACCGAAAGCTTCAAATCA
TACCCTGTTTTTTGAATAATctgaatctttttttaaacgtattttttttg
tttgtatcAGAATGCTAAAGTTGTAGGTGAATGGGTTGGTCTTCGACCTG
CAAGAGAAAAAGGCCCtcgaattgaaattgaaaattttacccTCTCGAAC
AATCGAAACTTAAAGGTAAGTTAAATttattaataaaaaataatgtgTTT
CTCAACAGCCTGGAATTGGAAAACTTAACGCCACCTTCGTCCTTTTCCAA
TGACATACCTTAAGTGTATCGATTTTggtggggattaaatttgacGAATT
TGGCAGTTTTTGGtaaaatccgccaaattgaatacactccaaaattttta
aaatgcaaatttaaaaaatagattttaaattcgattttaaatacatgttt
ctttttgacataatcagcctcatggaaggctggattggaaggttctttaa
aaaaaccgaatcaaaaaatctttttttctcattctcagcctcagcatgtt
tcttagatgtttcttagtttttaggcattctaagcctcatgtttcttaaa
agtctgtttcttaaaaaaaatgcatACCTCTATAGATCTACTTTCTATAA
TACTATGAGAAACTCTTTTCAGAGAATGAACAGAAGCCTACCGTATAGCG
TTATTAGCTTGTGAAGTGTGATGTCATTTTACTTAGACGAtatatcgtct
acacaagatcactaaaaaagggaatagtttaggaggcggGAAACATTTTT
GTGAACGGGTAGTTAGCCCGTGGTGGAGTAAGCAGTAGCGGAGATGCtag
ctttttttttcaaactctaCTGCCACtatttttttcccgtaaaccgccct
gacgccctaacaTTATTTCCCGTGTTTACTTGACCCTCTAAAACCCGATT
CCTTTCGTTGCAGCTTTTGGGCTTTAATAGTATATATACCCATCTAAAGA
GAGTTGAAgaacaaaattttcagtttgaccTCATTCTATACTGACTTCAC
TTTAATCTTTCATGCAGGTTATTCATAATTACGGACATGGAGGATGTGGA
ATGACAATACATTGGGGATGTGCTAATCACGTGGCCAAATTGTTTGATCA
AGTTTGTTCGCAGCAAAATACTCGTCTACAAACTTCCAAGTTATAAGGAT
GACTATGATAACTATGTGACACTCACCACTTTAAAACAAAGTCCATTCTA
CGTCAGTAtcgttctttaaaaacaaacagGCCTCTAGTCCCTTAGTTTGC
TTTCATGAGAGCACTAAAAATGCAAGTTCTTTTCTGAAATATAATAAGGC
AGACCTGGCGGAAACGGGAAGATTGGGAAGACTTTAGCCTCCCAACTTTT
gggcaaatgagatttttttctcaaattactCGAAACGTCCGTCCTGTAAC
GAAAATCAAATGAGCGTATTGAAACAACTTTAGGAGCCACGCGATGCAGT
TTTCTTTAACACGTCCTTGCTGCCCGGGTGAAGGCCCGGGAGGGGGGGAT
ACTCGTATGGTCCGACATACGGTAtgtgtgccgcccttaagggtaggttt
ttcgagaccctcgaaAAGCACTGTAAGAGTGTACTTCTGATAGAGTGTAC
TACAAGGGTCTTATTTTAGCTGGATACATTATataagggtgtgtttgggg
actACTGAATTACAAGTCACATTTTCAGGTGTGTTAGCAAAATAAAGTAT
GCACTCAGGTAAATAAAGGCACGTCCAAATTTACCTTAATTTTTCATcgc
cgtttccacttgtcaaaTCTTCTCACTTTATACATCGCAATAAGCATATT
ACAATGTAGATCACTAGAATGactgtgccataattaattttttacccaaa
aaaaaagatattgggcaaaaacaaaaaaaatgacgATGACGTcaataaaa
cttgttttttttttaataactccTGTTTGGCTGATGGAAGAAATATATAA
TccggaccaaagttgcacattGTTTTACATAAGatgttttgttaaatttt
gctgacgtgAGCAGAAAtaagcaaaatacgaaattttgcaataaagtgtt
gatgtcagaaaaatttcaaattatttttttttcaaataatataaaataga
TCACCTCATAATATATTTGAAATGGTTAATTGGTCAACTAGTTTTATAGC
AAATAGtgtaattataatttttttttttttttgaaaatgcatAAGTAGAT
AAGGATTTGTACaggaatcatttttaagaataaatttcaactttttttac
atCAAGAATTTATTGTGGTataaactaaaaaataaaaaaataatcaaaaa
caaCCCCTTCCCCCAAACCCGGTGGGACAAAAGCCGGCAGAAATATCGTC
CCCAAATTCAAATCCAACTGTTGTCTCcgctgagaaaataaaataatgaa
atccTCACAGCAAAATGTTTAGGTTTTTCGATCCGcactaaattttcaga
tttgaaaacaatggattTCAAATCCCAGCCATTATAATACATTggaatat
caatctccatcgaTTTTCAATACGTTAATTTTACCTCAAACTTgctgaaa
aaatcttaccgggtctgtgagagaAGAGGgtgttcaaaaaatcatcacAA
CGTCAACTTACTTTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033204XLOC_033204Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052508-exon-scaffold_217-1491911889:42786..44076TCONS_00052508-exon-scaffold_217-1491911889:42786..44076Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:42786..44076TCONS_00052508-exon-scaffold_217-1510915933:42786..44076Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:42786..44076TCONS_00052508-exon-scaffold_217-1575043694:42786..44076Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:44133..44178TCONS_00052508-exon-scaffold_217-1491911889:44133..44178Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:44133..44178TCONS_00052508-exon-scaffold_217-1510915933:44133..44178Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:44133..44178TCONS_00052508-exon-scaffold_217-1575043694:44133..44178Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:44386..44506TCONS_00052508-exon-scaffold_217-1491911889:44386..44506Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:44386..44506TCONS_00052508-exon-scaffold_217-1510915933:44386..44506Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:44386..44506TCONS_00052508-exon-scaffold_217-1575043694:44386..44506Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:44848..44927TCONS_00052508-exon-scaffold_217-1491911889:44848..44927Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:44848..44927TCONS_00052508-exon-scaffold_217-1510915933:44848..44927Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:44848..44927TCONS_00052508-exon-scaffold_217-1575043694:44848..44927Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:47513..47578TCONS_00052508-exon-scaffold_217-1491911889:47513..47578Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:47513..47578TCONS_00052508-exon-scaffold_217-1510915933:47513..47578Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:47513..47578TCONS_00052508-exon-scaffold_217-1575043694:47513..47578Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:48126..48180TCONS_00052508-exon-scaffold_217-1491911889:48126..48180Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:48126..48180TCONS_00052508-exon-scaffold_217-1510915933:48126..48180Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:48126..48180TCONS_00052508-exon-scaffold_217-1575043694:48126..48180Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:48428..48529TCONS_00052508-exon-scaffold_217-1491911889:48428..48529Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:48428..48529TCONS_00052508-exon-scaffold_217-1510915933:48428..48529Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:48428..48529TCONS_00052508-exon-scaffold_217-1575043694:48428..48529Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:49033..49106TCONS_00052508-exon-scaffold_217-1491911889:49033..49106Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:49033..49106TCONS_00052508-exon-scaffold_217-1510915933:49033..49106Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:49033..49106TCONS_00052508-exon-scaffold_217-1575043694:49033..49106Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:50527..50644TCONS_00052508-exon-scaffold_217-1491911889:50527..50644Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:50527..50644TCONS_00052508-exon-scaffold_217-1510915933:50527..50644Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:50527..50644TCONS_00052508-exon-scaffold_217-1575043694:50527..50644Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:51346..51450TCONS_00052508-exon-scaffold_217-1491911889:51346..51450Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:51346..51450TCONS_00052508-exon-scaffold_217-1510915933:51346..51450Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:51346..51450TCONS_00052508-exon-scaffold_217-1575043694:51346..51450Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1491911889:52303..53904TCONS_00052508-exon-scaffold_217-1491911889:52303..53904Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1510915933:52303..53904TCONS_00052508-exon-scaffold_217-1510915933:52303..53904Clytia hemisphaericaexon
TCONS_00052508-exon-scaffold_217-1575043694:52303..53904TCONS_00052508-exon-scaffold_217-1575043694:52303..53904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:42786..53904 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.70751	3.45724	2.75287	1.47525	1.18877	1.84486	1.49971	1.68629	2.13655	1.56574	0.983213	1.73828	0	0.284981	1.01785	1.08959	1.82444	1.1005	0	0.445818	0	0.113941	2.74837	1.66721
Blast
[Close]
BLAST of TCONS_00052508 vs. Swiss-Prot (Human)
Match: OXDD (D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.332e-68
Identity = 133/344 (38.66%), Postives = 192/344 (55.81%), Query Frame = 1 
Query: 1156 KVAVLGAGIIGSSTAYKIIQQFSFCDVTLISDEFSPSTTSDGAAGHWEPFWLGDTPVDVIKSYAKETFAYVMENIKNNPDSPDIGFFTCHGF-LLSKDETFKKPFWYDIPSDSRVLSKDDLKMFPSEARSGMSFTTVYTEGRRLVPYYIKRFQEMGGKVFQKLISSLDELPGDFDVVINCTGLGSRKLFNDKSMFPVRGQVLKIKAPWIKQFVTYDVENQDPMYILPNQEFVVVGGTTQKGDYNAKISLTDRKEILDKATKFIPSLKNAKVVGEWVGLRPAREKGPRIEIENFTLSNNRNLKVIHNYGHGGCGMTIHWGCANHVAKLFDQVCSQQNTRLQTSKL 2184
            ++AV+GAG++G STA  I +    C VT+ISD+F+P TTSD AAG   P    DTP+   K + +ETF ++   I N+ ++ D G     G+ +     T + PFW D+    R +++ +LK FP     G +FTT+  E    +P+  KR +  GG    + I  L EL   FD+V+NC+GLGSR+L  D  +FPVRGQVL+++APW++ F+    +     YI P    V +GGT QKGD+N      + +EIL +     PSL  A  + E VGLRP R  G R++ E       R L V+H+YGHG  G+++HWG A   A+L  +      T +  S L
Sbjct:    5 RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIPHTYPDTPIHTQKQWFRETFNHLFA-IANSAEAGDAGVHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYV-FGQAFTTLKCECPAYLPWLEKRIKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEHFIR---DGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEPSLHGACNIREKVGLRPYR-PGVRLQTELLARDGQR-LPVVHHYGHGSGGISVHWGTALEAARLVSECVHALRTPIPKSNL 341
The following BLAST results are available for this feature:
BLAST of TCONS_00052508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OXDD2.332e-6838.66D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV... [more]
back to top