TCONS_00052516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052516
Unique NameTCONS_00052516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052516 ID=TCONS_00052516|Name=TCONS_00052516|organism=Clytia hemisphaerica|type=transcript|length=784bp
GCTCGATTGAATATAGTGTAAACAATCGCAAAAAAACCTTCAATGAAATA
ATATTTTCGTCTATATTCTCTTTCTAGGAACTGCGAGAACTGTTCCCACT
CCTGTTACACGATTTGTTTGGATACCAAAACCTCCCAAATTGGGGTTTCC
ATTACTTGGAGCCACGCTCCTACCCTGTTGACTATAATGctatgaaaata
ttcttaggacCCAAAGGAATTTTGTTCAAGATCATTGACAAACTCATGAC
AGACCATGATGCCATTTTTCAGCTTCCGTTTGAGATTCTTCCGGTAAGAT
TCATTTTTCAAGTGTATCATAAACTAGtctttgccacggaaagtcatgtg
acatattatttttcaaccaataagatttaataatctcgagggtaaaacaa
acactatggtttaactcactaaaagattatgtttactgaaaacacatata
attaatctttagtaaagtgttctgttgtaccccagttctgacgtcatgcc
gTAGCGAAGAATAGTTTTTTAAAGCAATAATAACAATTTTGAACGACATC
GATTTGAATCATATACAATTGTATGGAAGGAAGATTCCACGGATGCGGAC
AGTACGGAAAATAAACAACAACAGACTGTATGAAGCGTGATGAAAGATTT
AAacacaaaatacaaaattaaagcagtgcagtcaaaacacgtgattactc
gaaaaagttcacgtgattttatttatatatgttgctacacgttttttttt
ataagaacaaactatataagaacataaggcttcg
Run BLAST on NCBI

transcript from alignment at scaffold_217:93532..94315+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052516 ID=TCONS_00052516|Name=TCONS_00052516|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at scaffold_217:93532..94315+ (Clytia hemisphaerica)
GCTCGATTGAATATAGTGTAAACAATCGCAAAAAAACCTTCAATGAAATA
ATATTTTCGTCTATATTCTCTTTCTAGGAACTGCGAGAACTGTTCCCACT
CCTGTTACACGATTTGTTTGGATACCAAAACCTCCCAAATTGGGGTTTCC
ATTACTTGGAGCCACGCTCCTACCCTGTTGACTATAATGctatgaaaata
ttcttaggacCCAAAGGAATTTTGTTCAAGATCATTGACAAACTCATGAC
AGACCATGATGCCATTTTTCAGCTTCCGTTTGAGATTCTTCCGGTAAGAT
TCATTTTTCAAGTGTATCATAAACTAGtctttgccacggaaagtcatgtg
acatattatttttcaaccaataagatttaataatctcgagggtaaaacaa
acactatggtttaactcactaaaagattatgtttactgaaaacacatata
attaatctttagtaaagtgttctgttgtaccccagttctgacgtcatgcc
gTAGCGAAGAATAGTTTTTTAAAGCAATAATAACAATTTTGAACGACATC
GATTTGAATCATATACAATTGTATGGAAGGAAGATTCCACGGATGCGGAC
AGTACGGAAAATAAACAACAACAGACTGTATGAAGCGTGATGAAAGATTT
AAacacaaaatacaaaattaaagcagtgcagtcaaaacacgtgattactc
gaaaaagttcacgtgattttatttatatatgttgctacacgttttttttt
ataagaacaaactatataagaacataaggcttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033206XLOC_033206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052516-exon-scaffold_217-1491911889:93532..94315TCONS_00052516-exon-scaffold_217-1491911889:93532..94315Clytia hemisphaericaexon
TCONS_00052516-exon-scaffold_217-1510915933:93532..94315TCONS_00052516-exon-scaffold_217-1510915933:93532..94315Clytia hemisphaericaexon
TCONS_00052516-exon-scaffold_217-1575043694:93532..94315TCONS_00052516-exon-scaffold_217-1575043694:93532..94315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:93532..94315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246532	0.35144	0.994879	2.23227	0	0.0769054	0	0.0895008	0.137303	0.079671	0	0.18524	0.138562	0	0	0.0526794	0.135274	0.067671	0	0	0.0911537	0.128171	0.506679	0	0.0778466	0	0.445735	0	0.118272	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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