TCONS_00052518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052518
Unique NameTCONS_00052518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052518 ID=TCONS_00052518|Name=TCONS_00052518|organism=Clytia hemisphaerica|type=transcript|length=2630bp
CTgcaaccctacctgggactcatggCTCATGGAGGTGAAAAAGGTACCAT
GACCAGCGGCACAACCCCTTACACCCGTACCCCTTATTGCCCAAGTATCC
CGCCTCGGGTAGGTTACCTATGCATGGCCCGAACTTCGAATCCAAATCAA
ACTTCTTCAATGTCTCAAGATCTTTCAAGAATGTAGCTGACTGTTCTGAG
CTTTTGccatctaaaaagaaaagaaaatggttAAAGAGTCAATATAGTCC
GTGGCCAATTGGAACTAATCTAGCTTCATTGTCGAGAAcgtacaaaaaaa
aaaaatagtaaaattcactttcgttttctgcTAAGCTTATGCTTACCTTC
TTTGAGCTTTCCACCTTGGAATATATTCTTCTTTTGAGGATAAAGTTGGT
TTAATTTTGCCATAGTAGCACTAACTTACTAAGGTACACTGCTTCAGTGT
TGAGTTTGAAAGGCAGGAGCTTTCTTGCCTACTTGTTCGAGCTTCTTATG
TTATAAATTTTcgcaaaaacatcaattttttgttttgaaaaaattttggc
tACCATTTTGGTTTTGCTTTGTTGTCGAATCCAGTCTCCTCTCGGAAATT
CTGAGAATCGCGCACGAAAACGAGGCAAAAATAACACGTCGTTCTTCCAT
GTTGAAAATTCAAAGTGGCTGACGAAGTTAAGCAGTCCAGTCAGAACTAA
TCCAGCCTAAAATAATTGTAAATATGATTGGGAAACTGATTTTTTTAGGC
TGTTTTACTTATTGTGCTTCTTATTTCATCAATATTGATGCCCATGGAGA
AGAATGTTTCCACGACCGTGTCAATCCAGGAACGAAAATGGCTCTTAGAT
TTGAAGTTGCTGATGGTGGATTTTTAGATATCgatgtcaagATCACTGGA
CCTGACAACAAAGAAATTTACTCAGGACAACGGGAGAGTAATGGAAAATA
CACTTTTGCTGCCCACATGGAAGGAATCTACTCATACTGCTTTTCCAACA
AAATGTCAACGATGACACCAAAGATCGTCAAATTTAGTATGGATATCGGT
GAACCACCAAAAGATACCAGCAAAGAAGATGCAGaacACCACGACAAACT
GAACGACATGATCTCACAATTGACTTTATCATTAGCTGGTGTCAAACATG
AACAAGAATACATGCAAGTTCGTGATCGTGTACACAGAGCTAtCAACGAC
AGTACGAACAGCCGTGTGGTGTGGTGGGCtttctttgaaagtttgatCCT
CGTTTGTATGACCCTTGGACAAGTATACTATCTGAAACGATTCTTTGAAG
TCCGACGTGTCATCTAAACATATAGACATTGACAAAATAGATTACATCAT
ATTTCACCATGAAGACAATTTTTAGACCTATCTCTCCACAAACTAGTATC
AGCTTTGTATCTGGAGCTTTTGAAATATATCTCATGAAATTGCAGGAAAT
TaagttttttctaagaaaatgaGAAGCTTTAGCAAAAAAGCAGCATTAGA
TTCTAGATTTTGTGGAGTAAAGGTCTCCAAGGAGGTTTGATACACTCCCG
TACATTGAAACGTCATTGCCGGGTTTGGAGTTACATACTTACgaattttt
cactttgtttgatCATAGACTATGGTTTGATGGACAGTTTGGTGTGTATA
TTTGACTCTCTCCCTAATACAATCATCAATAAACTAACAATATTCTTCGA
ATCAGAGAAAATCTAATTTCGTTAAATTAAGTTAAATTAAATTGTCCATC
AAGGAAAAATAGAGGTTTCAATGTGGGAGAGTTGAATGTGCATTTACTTT
AACATTTTATAATTAGGTTGaatagatttttaaaaacaatcatTATCATA
TTAAAACTGTTCTATAAAAAATGATACTCTTACTCGGATtagagaaatat
ttttcatgaatatcatgaatatcaaaGTTGAAAcgttttgaaaattcaat
tttttttctctacaGCTGCTACTTTTTGTACAGTTTTTTTCGGTGTAGCA
ATTGtctttcaataatttgaagaaATCTTCGAGGAAAATTATAGAATATT
TTTCTTGCAATAGACAAggttttatatattttgaatttaGGTATATTTCG
ATGAATTTTTAGgggttttctccttttttttacagaagCCTGTTTGCATG
AATGTTAATGCATGAATGCTAACAGCTTTTTGTACTATAttggtatttca
ttttctattgACCTATAACTTTTCGACTTTTGGGTGTAGGTGCTTTATCC
CGACATAAATATTATCAAATGGTTTGCATTGATCtattaattctttcatt
agTAAGCAACTCCATNAAAATATTATCAAATGATTTGCATTGATCtatta
attctttcattagCAAGCAACTCCATGTGTAGCCGcagtttttcattaat
tttctaCCACATTACAGTATGTTCCAAGCTAAAAGGAAACAGTAACAGTT
TTTGGttgtatttttaaaatatttattactTACGTAATTTTGattgagaa
aaaatataaatttaccCTCTTCATAAAACGAAATATTATCCATCTCGACA
TTTTTATCCTGTGTCATACTTCTATTATATGTATTGTATTTTGTAATCTA
CTacacaaaaaattaaacttgGACCGTAAA
Run BLAST on NCBI

protein sequence of TCONS_00052518-protein

>TCONS_00052518-protein ID=TCONS_00052518-protein|Name=TCONS_00052518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MIGKLIFLGCFTYCASYFINIDAHGEECFHDRVNPGTKMALRFEVADGGF
LDIDVKITGPDNKEIYSGQRESNGKYTFAAHMEGIYSYCFSNKMSTMTPK
IVKFSMDIGEPPKDTSKEDAEHHDKLNDMISQLTLSLAGVKHEQEYMQVR
DRVHRAINDSTNSRVVWWAFFESLILVCMTLGQVYYLKRFFEVRRVI
Run BLAST on NCBI

transcript from alignment at scaffold_217:142211..159756+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052518 ID=TCONS_00052518|Name=TCONS_00052518|organism=Clytia hemisphaerica|type=transcript|length=17546bp|location=Sequence derived from alignment at scaffold_217:142211..159756+ (Clytia hemisphaerica)
CTgcaaccctacctgggactcatggCTCATGGAGGTGAAAAAGGTACCAT GACCAGCGGCACAACCCCTTACACCCGTACCCCTTATTGCCCAAGTATCC CGCCTCGGGTAGGTTACCTATGCATGGCCCGAACTTCGAATCCAAATCAA ACTTCTTCAATGTCTCAAGATCTTTCAAGAATGTAGCTGACTGTTCTGAG CTTTTGccatctaaaaagaaaagaaaatggttAAAGAGTCAATATAGTCC GTGGCCAATTGGAACTAATCTAGCTTCATTGTCGAGAAcgtacaaaaaaa aaaaatagtaaaattcactttcgttttctgcTAAGCTTATGCTTACCTTC TTTGAGCTTTCCACCTTGGAATATATTCTTCTTTTGAGGATAAAGTTGGT TTAATTTTGCCATAGTAGCACTAACTTACTAAGGTACACTGCTTCAGTGT TGAGTTTGAAAGGCAGGAGCTTTCTTGCCTACTTGTTCGAGCTTCTTATG TTATAAATTTTcgcaaaaacatcaattttttgttttgaaaaaattttggc tACCATTTTGGTTTTGCTTTGTTGTCGAATCCAGTCTCCTCTCGGAAATT CTGAGAATCGCGCACGAAAACGAGGCAAAAATAACACGTCGTTCTTCCAT GTTGAAAATTCAAAGTGGCTGACGAAGTTAAGCAGTCCAGTCAGAACTAA TCCAGCCTAAAATAATTGTAAATATGATTGGGAAACTGATTTTTTTAGGC TGTTTTACTTATTGTGCTTCTTATTTCATCAATATTGATGCCCATGGAGA AGAATGTTTCCACGACCGTGTCAATCCAGGAACGAAAATGGCTCTTAGAT TTGAAGTTGCTGATGGTGGATTTTTAGATATCgatgtcaaggtatacagt atATTCATTTTATATAATTTATACTATATAGACTATATTCTATTATCCAG AAAGTCTGCACAACAgcagttgaaaaaaaataagatttcccTTTAATTTA AACTCCTCAGATATGAGAAGGAACTAAACTAGAACCTGCCCCCAACGGTG ATATGTCACATGTTCGACAACCCATTTGTTCGACAACTcacttgttcgac aaattcgtaaaattgtcgaacaagtgagtTGTCGAACAAATGGGCGCCCA CTTGGtcgacaacccacttgttcgacaacccacttgttcgacaatctaTA GTTGTTCgacacccacttgttcgacgcCCATTTGTTCGACAAGTGATCGT TCACATAATTGACAGCCCAGTTGTTCGACAGTGTAGATGGTCGACAGTTT GTATATTACCCTGTACCAAAGAGTATTTCACATAAAATCGTAGCCTATGG TTTGCCCTTATCTGGCtcccagatgcagaaattttcttccgacacggtAA AGCTCTGAAGGGAGGCCCGTAtattcgagttagaaaagtttgagttagca attttcgagttagctaaattatgacgtaaTAAAAATGTAAATTATGACGT CTACTCAATTCTAACtgcatttttcttttctaaaaaagatttttcgagtt agaattaactggaatcttttttttcgcaaaaaaattttcgagtTGGCTAA CTcggattttttttcacaaacctATTTTTTTGAGTAAGTTaactaggaat ttatttttcgcgcacaagttttcgagttagctatcttGGGAAAGATTTTC ACATctgattacggaattttgcaagaccgcgtaAAGGATTTTGCTGCGAG GAGTCTGGTAACCCAGCAACCTCGCTCCCTGCGTACGCCTGCGTATTATT AGCTTTTTATATGCTTACATAtagcacacccccttctcacagccacagcc ccactggaaaaattgtccaaaatatcgtccccggtgggaaattaacccca aatttttgtccccattgaaaataatcaaataatgtcagatcttttgtttt atgacgTTTTGTTTTAAGAAATTCCCCCCactgaggtcctataaattaac ctttgtccgtccgttcgttcgttcgtctgctgttaccagcttttctcgag attggctttagttttttctgatttttggcaaaaatatgcaaaatagcaat gcccaaaatgtgacagagcccaattttcggaaaaatttttttccggccga aaataccggaaatatgccggaaaaaccgttttttttagcattttctcgag atttcatcatttttttctgactttttgcatgcacaaagatgcgtattagc aatgtccaaaacatggtcgagtccgatttttgattcttttccggtcgaaa ttgccggaaatatgccggaaatcgccatttttgcagattttgatcagact ttttccttatgttatatttcgttgtttttttcatagaaaaatattATCAA TGGCAATTCctaccatcaagcatggttcaaatgtcaattaaactgatttt tgaagccggaactttctaaaaatcgccggaacagccgattttcgccggaa aaacggtatttcttgaatttctcgagctgtactttNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAACGGTGGAGAACG AAGCattgtttttccattgttttaacAATCGAGGAtgtagctttgtccgc aaaggacaactgtcatggcggcttgaaggtctctgattttgaaaaataat taataatccaatttctaaaaagtcctgtaacttgttgtttttgtatattt accggatgaaactttgaaaatgaaagcaagaaaactcaacgaatacattt atgaaatcaaaTGTGACAACAAACATCATCAAACAACATCGCATGTTTGT CATATTTTTATCATAGTTTGAAACGTCATAAGAAcgacatatcattagca atTTATTTGATGCATTTGACTCTCTTGAGAGAACTTTAGGTCTCATTTGA GAATCGTATAattgtgttttgatgaaaaatgcaataaatAATTTTACGAA AGATGATTAGTGACCATTAGTGAAgggaggagggtgaacaataatgtcat tactgcggacaaaaTGCTAGTACatgaaaaatcgatgaaaaaccagCTTG TtgtgtacacatttttttttataagcaactcaaTTTTTCGGGTCAGGCCT AGAGCTGCTAAGGGTTTTTTGGAAATCCAGGCCCTAAGTTGCTTGTAAGg ttgcttaaaaattttcaagcttaaaatggttgaaaagcacatttttgcat ttttcaacaatttttcaattttgaatgggcagtagaggcatttttcaaaa attttcaaggcTTTCTTTCAAAGTTGtgtcaaagttatttttcattgctg aggaaaaaagttgctAATTTGGATGTGAGACCTCAGGGTTGCTAAGCAAG ttgcttatttttttggccattttgaggccttagcaactcggttgcttata aaagaatgtGTATCCAGAGTCCtatctatgataaatccatgtaACTATAA ATATTCCGGCAACGGCGGTTACAGAAGGTACTCAATCTTTTTTATGGAGA GTGTTTCTTTTGTTATTATTCCTTTTATGGGAGTAATTGCTCTCCATTAA AAACACTTTGCATTCCGACACTAACCATCAAGAATATATCGAGAATCGGT AAACAGGCCGTTTATAAAAATGACCAATAAAGATTGTGCTTGGAtcagaa agagaaaatattaactttATTCTTTATAATGGCTCTGAAAATGATATCTT ATTCGCTTATCTTAGCATTAATTCTctaagaaacaaaagaaaagatttga aaatgttaatattACCTCAGAGTCAAAATATTATGGGAATTTTGGTCGCT TTTCGACATTTGAAGTTCAGACGAGAAAGTCAATTTTGGGCTAAAACCTC TACTCGTCTATTCCTTTTTTAGAGCACTTACGAATCGTTTGTAGTTTTGA AACTTCCTgctcgggtgagttagggcgtgtctaaagtttttaaaaacact aaTCACAAAAATGAGAGCAATAGCACCCATTGTAAGGGATACAATATTCT TGCGTGATGCTATGCTGTCTCCTCGTCCTGAGTCTCGCTGCGGTGGCAAA AATAATATCAGCTTCCAACCCTAGTACCAACCAACCCAAGTACTCTCGGG GGTTCTTGTATatagaaaatagtattttgGCGTCTTAAAGTTTGTCTTGC GCTAGCGTATATTGATTACAGCGCTCTTTATCTaatgtgagtgagtccac ctttagaatattgccCGCAGTACACCAGCACAGTACTCTCCTCACTGCGG AACGAAACACAAGAGACCGTTTGaaacgaggggtaaatcacttgaaaaaa gtgtacgatacttttttaattctcatttgactttttgacttttttttgac ttttatttgactttttgatttttttcgaactttcattttgactttttccc gacAAAAACGTCCACCGCCCTCGGGCGcccaaaattttccacccaaattt gtccaaaaacgCCAACCACCCATAAATTTTATTCCACCCATCcacccatt caagaaactttttgactttttcaggactttttttctaagaattcttgact ttttctttgactttttgactttttctttgactttttgacttttttttgac tttttttagaggtgtacgataattttttgagtgatttacccctcggttTG AAATGGGCAGAGTTTGTCAGAAGAGTCGCAAAGGGTCGATAGACCTATGC TGTTAAGTCAAGTCAAGTAAGTCATGTctactccataatggcggcaaaTT ACGTAACTTACATTCCGATAAATAATGAGATCTCTCACGGACTCTCAGCT CCACATATAGTGTATACATAGAATAAATCCaactgacgagttaggctaac tgttatgatcGCCATTCCTCCAAGAAGAACCCACACACGGGTGCACCACC GTCTGGGTGCACGTTAGGGATGAGGTGATTATCCCTAACAAAACGCTGCC ACTCGCCTGTGCGCTTACGCGCACAAATTTTTCCCCATGCGGGCTAGTGA GAGATCTCATTATTTATCGGAATCTCGTAAACATAAcgaaatgtgcaaga cctctTTTGCCAAATAATCCCAATTTTTGAATCCGATTATTGAAGGAATA CTCtacccacagatatctgtaaagcccgaagggattgccgcctacttttt tttatctcgcgctccaaaaacaattaaaatgctagatcctatccgcCGCG GGCACGAATTTAAAAAGtcactttttttgctggagaaagcttaaagttgc atatctagcccttcgggctttacaaatcTGTGACTCTACCCCATCTCCTA CATGCAACACATGTACTTATATATCTTTGATTCACTTTAGTTATAAGAGG ACAGAATCATAGTTTAGAAAACTCATCATGTTAGTTTCGACACCTCTAGC TTCCTTTTCAACCGGTATCCGAATCGCTCTAGTTTGAAAaataacaagaa gcccgttgggcgtgaaggtccagcgcTGGTGAAAGTTTAGTTTAGAAGCT TATCGTGGTGAAACAAAGAAGCATAACCTCTATACTGTGATAAGAGATTA ATTCGTTATTGTAGATGGGAAGCTAAACTGATCAAAATGTATAAATAAAC ATTGGTGCTCTATTATagcaaaaaatctttctttccgTTTTTCTTTATAC TCTTATTAGAAAcgtacaaagttttttttctcataaaattgcATCTGTTC TCTTGGCTGGAAAAACACGATCTGTTCTGAGTAGAAGACTGGTGCCCTTG GAATCGGGGTATCTGTTCTAAGATCgaaaaatccttccagctggcaaata agaacagataggtatttacaatttttttatcgttggctgcttctgccCCT CCCTcatattcgattttttttcttgaaaagcccTTTATTTGTGatcgcaa aaaaataaatacacaAAGTTCGAAAGAACAACCACAGAGATATGTAGATA TCTGTAAGTTCAGTGTCCCGGTTTGCCGAATTTCAAAGTCCTGGTTTGCA GAATTCAGAGTCCCACTTCAGAGTCCCGAATTGTGGGTCCTAACTTAGAT TCCTGGTTCGCCGAATTTCAGAGTCCCACCCCAAAGGTCCCCGTTTGCAA AATTTTCCGGGACCCACCCAcacttcattttttatgttgTTTTATTTCAA CgagttttgaaattagccgtagcaTAGAAATTTAGACATAGTAGACATAA AGCAAGAAGTAATGGAGGgaaaaattttagtcgtctagaaacctttgtgc aaaaatatCTAGGGGTCTTGTTCGGAAGCAATGTTTGCTTTGATTTCATA AtcgatttgattggtttagaaaaaCAATCGAGACGCACATAATCGGTTGA ACAAGGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGAGATATCAGTACACATA ACAATTTCCTCTCCCAAGAAATTATTCTCCATtgtccaaacaaaagaaaa gtgtcattatttcaattataattttttcccactcaaaaaaaaagttgatt ttgtttttgagagtttgttgatGCTAATCTCGTCCCGTGTGTCCCAGATt gaagcatcaaaaagctgatgatACGAGGATACGTGTTGTTGCTTGATCAa gaattaatttaatttaatctatACCCTTCGTGCTCTTAACGGAATAGCAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCCGGAATACCGG ATTCTtcccagtcgtttatacaaactaaatcccgtaaatCATAATATCAT ATAACATATATACTTACGGTATTACACgcataaacgactccagtctatgt aGTCTCGATTTCCGGACCATTATTCTTATTACGCGAAACAGGGCGGCAAT TCTACTACATGTCTGCCATAAAAAGCCGCGCGAGAgagtgttttgaataa ttttcctcttttcatcTTTTGACGAGCGCACTTCTCTTTTGCAGTACTGT TCACCTTTCAGTGTTTGATAATTAGGTGGAGCTGATTATTGACCTggaat ttttgatttataaGTCTAGCTCTAGACTAcaggaggccccccagcggttt gcgtgatggcgtgattgggacttctTTCTTGCGTGATTGcatgattagag attttttttggcgtgatggcgtgatcaagattttatcgtgatgcgtgata gggcaaaaatttgaggtgtgatgcgtgatttgggctatttttcgctattt tttgcgtgatgacaaattttagcgattgattttcgtgaagcgtgatggag aaaatttttttgcgtgatggcgtgattaggggtgccgctggggggNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNGGGGCTCCTACAGTCTatgctttttgaga aaaatgaaatccGAGTTgattgctaactcgaaaatccttttGGGAAAATG GAAAAGCNNTTCTAACTCGAATTTTGGTAACTCGATAATTCCGGGCCTag gttttccgggcctcgttTCATTTCCgttgttttattttgtcgaACAACTG GTCCGTCGAACTGATGCgctgtcgaacaactgatcgCTTAGTTATTCGAC AGACCACTTGTTTGACAAATgagtgtcgaacaagtgggtgtcTAACAACC ATACAGTCGAACAAGTGGATATCGAACAAGTAACTGTCGAACAACTGGTC TGTCGAACAACTAAGcgatcagttgttcgacagcGCATCAGTTCgacatt ttttaagatttgtcGAACAAATGCACCGTCGAAcaagtatactgtcgaac aagtgggattttCCCCCCCCAaccttctgaaaattcaaaacaagacTTGG TGTGAAGGCAGCTGCCGACTTTTACTGAACTTATCGAAGCACATGCTTAA GATGTAGAATGTCCAATGTTGAATGATAAAACTTACCACCAGTTAATCAA AGACTGGACACAAATCAGTCTGGTGCGCGCTAAAAAcgctaaaagaaaaa agttaggAGTTTGTGTCTGATGTCAAGCATTCACGCAATGACATACAATG AGACACTGGACAGTTCAGTATGTCAGAAGAGTCGTTGATGTCTATACTCA TTCTGCCAGGCCAGAATATAAATTTGGTGTACAGAATGCCCGTTTGCATA GGGTAAAAATAGGAAATACAAGatcaaatttggaaaaaaaaatttttaaa tgacCCTAAAAGATTTAACTGTCTGTCTAGACTTAGACTCCTACGTATCA AGATTATGGGATTCAAAGTGCAGGctaattttactttcattttcagtggt ttcatttttttcgttttcaagccaacatcttagcagtTCATAACAAACCT TGATATTCAAAAAACTTATCATCCAGTCTGAGAAATCCTCTTACAGTAAT TGCGTGCTTGACTCCCAAGGCTGTAAGCGCGCAATTACACAGTTAAAATT GCTGTTTAAATCTCTGAAGTTAAGCACGCAATTAAGAGGATTTCCTAGAC TGTCATccttacaaaagttgtctttctGATTTCCCTTCCACAatacaggg ctcgaaataacggtcggacatcggacattgtccgacccaattgctgaaat gtccgacccaaatcgattctagtcggacatcatgtcTGACCCAATTACTT TTGGtgccttcaaaaaatttgtcagatgcgttgtgaaatttccaaaagta aTTATAATTAACATAGAATTAGTAACCTCTTTATTTACACACAGAAACTC CCAAAGTTGCGATCATTAGTGTTAGATATTCATTTTGTGTGatgcttttt ctcaacaaatgaaaGCATGCTTCAAGTAAAAACCATAAGCTTCTGACCAT TAATTGgcatttgtttagcttctttgTGATCAATGTGaaattctatcaga agcttgtgTTAGACTTGAAGTATATAGATTTTGAAGTAAGTGCAGTCTGT CAGGTGTATTTTCATTCAAGTAAAGATTACTCAAGCTCACAAAAGCAAAA TAGGGCACctgcttttttcctttttcactcAAATAAATCGCGATCGTTTG TTTGattttccttataaggaaattTAGTATTTCAAGCATTCTTGAGTATT TATATGATCACGATCATGGTTTTTGGAGATAGAGGcttaaattaattaat taaattcaATTATTATGCCTGAGATGATTCATTATACTAGCTACGTACAG AAACCTTTTGCTTTTAAGTTGAAAAACGAATGTCCGAccccacataaaaa tcaatcggacatgtccgacccaatttactttaaaagccttaggacatgtc tgacccaaatcaatttttgatcggacaatgtgtccgaccacctaaatatt atttcgagccctgcaataatttatgtaattacaCTTTCTGTCAGTCAGGT TCATCATAATTATACGCATGTTTTTGTCAAACGTGCACTGCTGCTTCTTA TAAAGCTCCTGTCAGCAAAATTATAATTCATTGAATTTGGCTACGAAAGG TTAGCTTTGGGCACGCCTAggaatctttttaaaaagcttgaGAGTCCAAG TCAAACACGTTTCATATAAAAACTTCCTATAATGTGAAATGTTTGTTCCC TAGCCTGTTCTCTTTCaaatgtaacaaaaatttttcaattttgatgattt ttaattgCCGTTGACGTCATTATGGCGTCCTTTTTTTTAGCTATTcagct tctcaaatattgatttttaggTATAtgttaaaattgtattttttggaatc cttggatttttctcaccactcgttttttgtgatcttatgaacctaattga tcatttaaaaatgttttcttctaaCAAGTCTGTGCAAACAAAGAACATTA AACAACGTAAATCTCACTATAGAAACAGCTGTTTTATCTCTATtactgtg agtggtcctaaatccgattgcactgcctaaatccgaccccccaaataact gctatgaaaaaaaattatatgtttgcaaacattccctctccaagttgaac aatactattgcaagaactctcgaaataaaacatctaacaagatgactaaa gGTTAatatgtcaattaatgtgatcaaaaaagtgtgagttgtaaaattaa ttacAGTCTCTATTATTTTGAATCCGTTGCTcagtgtttaaaacgttaac aattttgtaataaaaaatgttttgtataagaagtaattattgttatttgg ttcaattggttcagtatCAAATGTCTGGGTGTTTTTCCACTGGCGGCTTA AGCTTACGGGACGCGTAATAAAACGCTGAATAGCCCAAAAATATTCATAT AAGTTGTGGATAAAAAGAGATGGTTACACGTTATgtattcttttgtaaaa aataatttcatctcCCACATCAAATCTTTTGTATTTCCTGATCCGCCTAT CCTCGCTCTTTTGTTCTCTCATACATGCCCTAGACCATGTATTAGTGGAT TAAAAAATGcgtgaaaaatacaaaagattcAACAATTTTTCTCCTGTGTT GCTTTGGGAAATACATTATttctctgaaaagaaaaaatttaacgtgcaac catctcttttcatccaAAAGTTATATGAATAGTTTGGGCTATTCATACTT TTATGAAAAAGTTATATTAATCCAGTTAGTTTAAGCCGTCAGTGGAAAAA CACTCTCACAGTTTAGTTGACattttggtatcttcattgcgtcccagcga aaggtttgtttttatttcagtttgtaTCTTtaaaagaccccatcggattt aggcagggctgtcggatttaggaccactcacggtattatcttgaaaaatt gactttttctatAAAACAATGCATTacaggggggggcacgcagttactac aagacagtatgacacttactaccgtggtggtactgtattcagaagttatg aaaacagttactacacagtgtagtaactgctgtttgggggtggtgccaaa cactaaaactagcacttttggtgtagtaagtgcatatattttaattcttt ttaaagaacattcaaaattgttcacaaaatatttttgttataaatggacg aaaaaaaatttgactcagacccaactttgaaattatgctttccctaatta tcattaaaatgttctcaacagctgttaaccaagctGAACCAAgtgaatta aaagaaaatctagcacaaaaatggctttaggttgaaaaataattgcaatt tagggtaatttcgagcatgtttttgatatcactcaaaaacaggggtggta cctggaaatcttttctgaaaacagttactaccaaggtgtagtaactgcaa agggggggggggggggcacgcagttaccacaagacatgatgtggagtaag tgctttttcaaccctttttttcaggaccccccccctttgcagttactaca ccttggtagtaactgttttcataacttctgaatacagtaccaccacggta gaaagtgtcatactgtcttgtagtaactgcgtgcccccccccccctgtgc aTTATGTAGTTGATAGCAAGAATTACAAATGAAACAGGCTAAAattatat gaaatattttaggaaattttttggttgcttCATTGACATTCTAGAAAGTG AGTAGGGGTAGAAAACCTGAATGTTTCTTGTGGCAGAATATGGGAGCTAG TTTTTTGCTATTTCTGTATGCGGAACAGTGCGGAAACCATTacagtaata gtaaaatgttacATTCACAACATTTTAAATTCCATCAACCAGTAGAAGAT TTAGaggattttcaaattcaaatgaaTCCAGTCAGCAAAAAACTTTGTCC ATTGCCGCCCTCTTTAAATTTTGCTTTTCACACTATTTAATTCCTTAATA AACAGAATGCATCGGTTGACCTTAAAAATGGGCGCTACTATCTGCCCTTN GACCTTAAAAATGGGCCCTATTATCTGCCCTTAACTTTGCTTTACTGGAT CACCAAATCTCAACCGAATTTCAAGTTTTGTTTGGGCAAAAACTTTTGAT CTGAGATTTTGGATTCATATTCGAAATCATAATCATCCATGTTCAAAGTC TCAAAAAATAttatcagatggtttgagatagtTGTCATGTGGATTCCTTT TATTGTCTATTGCCTATTTTGCCTTtaactgtttttcaaaatcaagataA TTAAGTTACAagtattttacttttaaaattaatttcaactttAAAACCGT GTAAAAAGACCCATTTtgggaaatttcaaattactgTAAGATATTGTAAG ACTTTGAAAAATGCTTAAACAGATATACTTTGGAGGTTTTACTTAGGACT GTAGAAGGTTTCTGCAGGTTAGATATCTctaaccatctgattatcccttt aactggaaagaaaaaatcttaaattttaagttttgaattttcttagGCTT GAACCATTCCACTAAAACGAAAACGCcaacttttatcaaattacaaatct gcagAGGATTTTAAGCAGAGAATCTGATCTTAAAAATTTCGTGTGGATTT ACTAATAAAATTTTGCTTGTCATGCCAttcgtgaaatatttcactggaat ttaatttcgcaaatttgaCTTAAAATAAATATCTCGCAGATCATTTTTGT TtagtaaaaaaattttgtttttcttataatctCGTTAATAACCATTGATT TCGCTTTGGGTAAAACATTCTCGCAAAAAAAGTTCTCGCCCCATCTCTAT ACCTATCCACTCCACTCCACCATAGATCACTGGACCTGACAACAAAGAAA TTTACTCAGGACAACGGGAGAGTAATGGAAAATACACTTTTGCTGCCCAC ATGGAAGGAATCTACTCATACTGCTTTTCCAACAAAATGTCAACGATGAC ACCAAAGATCGTCAAATTTAGTATGGATATCGGTGAACCACCAAAAGATA CCAGCAAAGAAGATGCAGGTCAGTCTAGAGTGAAATTCGATAAACTACTT AACTAAACCCCTTACACAATAAACTTAAAAGATGACCTCAATTTTCAGTA CAATATCTGTGAAAGCCTCGTTCAATTGTTTGAAATGGAGAAAACTGACT ATTGCCATTCAATCAAACCTAGTAAATTTGAATCCTTTAGTATAGCATGG TGTAAAGGTTGATAAGTGAGATTATTCATTTGAAGAGTGTCGATCAAGTG CTATAATCTTCCGTCTAACACAAATAATGCCATACTTTCAGAAGCTTTAC CTTAGCCTTGGTGCCACTCATTGCTTTTTGATTAgctggatggcgctgat aagttgCCCGATGTAATACGGCAGAACTTTTTTGGTTTTGCCTTTGCATG CAATAAATCCATACCtctagatccagtccctttttagaggaaaaaacaac aaaaaacctTAGTCAATAGACTaatttttgttacaaattttggagatgcc ttggagtttttacaagatacttcactaattggtcatttaaagagatagag atgacgcgttctttagaaaaagtaataacattcttttattacatcttaac gaccaaccaaatcaaataagagcttgtaaaaactccagcttgttgcaaat tttgatattttcatgtttttataatAGTTCTATAAACTTTGATGAGATTT TAGAATATATTTCATTGTTTATGGtattttatattgttttttaaaacgaa attgaaaaattgaaagatggCAATATCCTCAGTCTACTTCACTAGACTCA GattatcagaaagcaaagttcagttaGCAGTAGACCCCTAATTTTTTAAT GATTCCTTTACCTATACTATCAAGCTTTACTCAAAGTAGAGCTTAAAATT AGGTTCATACATTGCCAAACTtctctaattttaaatttcattttcatttt tcagaacACCACGACAAACTGAACGACATGATCTCACAATTGACTTTATC ATTAGCTGGTGTCAAACATGAACAAGAATACATGCAAGTTCGTGATCGTG TACACAGAGCTAGTAAGTATAAAAAAGTTGTATTTACTAAGCTTTATATA AACCCTGGAGGCAGTTACTCAATCCTGGCCAACCAAAAAGCTTTGGATGG ATTTTTGAAAGTAGTATTCTAATGGTACAGAGGTataaaatgcatcgaga gcgctagatttAGTTTTCgttattcattttttatgtaGCGTCATTTGGTA CCAAGCAAATATCGGGTGGGTGCGCCACAAAAGTGCCACTTTCTTTGTAG TGAATTTTCTCGAtgtctaaaaatttcaaaattaaccaatcttttctcat ttgaaagaagaaatataaactgaaattttgatgtatcacctattaaattt gatttattagGTCAAAAATTATGCTCTatcgaataaaaacattactttca gaaagtgctcgaaaacgttgaaaattgaaacagaagCAAGatttacatga tacatcagtatttttgctatgcttcaGTCATTAAAATGATAATTTAGCTG TCAGTAACAAGTAATGTTTTGTTATCCAAAGGAAAGTTACATTTCGATGT AGGGAAGAAAATTCCTTAAAAGGCctaaaaatctggtaaaattcataaaa atacatcaagtaatatgggtttcgagataAGTTCAGCCTGAAGGAAAAGT TcggtaaaaataattttaaacccTCTTAAGgtataaatttaaaaatttac gTGTTCTATTACTAAAGAATGCTCTTAATcgtgtaaaggctattgcgatt gtcaattttagaatgaaaagtcgattttcaacgttttcgagcactttttg aaagtaacttttttattcaattgagcataacttttgatctaataaacCGA ATTTAATTAAATGAATTTTCAGacctcgagaaaattcactacAAAGAGAA AAACTCTTAATTGTGGTGCGTTCACCTGATATTTGCTTGGTAACTACATC AAAAATGACCCAtccaaatttaagtttatctttcttctttcgaaTGGGAA AGGAGTGGTTAAATTTTTAGacctcgagaaaattcactacAAAGAGAAAA ACTCTTTTGTGGTGCACACGGTATTACTGTATTGGCTTCCTTGCCAAACT TACAAAAATGCCCCGGTCAAAGATTGCGGATACATAGCTTAGTTCAAGTT TATTAAAGAGGTCAATGGTTGTATTTTGCGTTTTGAGGAATTCCATTTGT CTCAAGAGTTACTTTGCTCCAATATTTTTTAGTTGAGGATTGTCATTATC CCTTTGAAACTGTTTGAGAGCAGAATTCTCAACTTAGGTTTGACTAGAAT CTGAGTATGTCTGTGTCTGTACCCTTTGGGTGTATTTTTAGAACTCTAAT CAATAACAGATAAAATGCATGTATCATAAACACAAacttttaattaattt tctttcagtCAACGACAGTACGAACAGCCGTGTGGTGTGGTGGGCtttct ttgaaagtttgatCCTCGTTTGTATGACCCTTGGACAAGTATACTATCTG AAACGATTCTTTGAAGTCCGACGTGTCATCTAAACATATAGACATTGACA AAATAGATTACATCATATTTCACCATGAAGACAATTTTTAGACCTATCTC TCCACAAACTAGTATCAGCTTTGTATCTGGAGCTTTTGAAATATATCTCA TGAAATTGCAGGAAATTaagttttttctaagaaaatgaGAAGCTTTAGCA AAAAAGCAGCATTAGATTCTAGATTTTGTGGAGTAAAGGTCTCCAAGGAG GTTTGATACACTCCCGTACATTGAAACGTCATTGCCGGGTTTGGAGTTAC ATACTTACgaatttttcactttgtttgatCATAGACTATGGTTTGATGGA CAGTTTGGTGTGTATATTTGACTCTCTCCCTAATACAATCATCAATAAAC TAACAATATTCTTCGAATCAGAGAAAATCTAATTTCGTTAAATTAAGTTA AATTAAATTGTCCATCAAGGAAAAATAGAGGTTTCAATGTGGGAGAGTTG AATGTGCATTTACTTTAACATTTTATAATTAGGTTGaatagatttttaaa aacaatcatTATCATATTAAAACTGTTCTATAAAAAATGATACTCTTACT CGGATtagagaaatatttttcatgaatatcatgaatatcaaaGTTGAAAc gttttgaaaattcaattttttttctctacaGCTGCTACTTTTTGTACAGT TTTTTTCGGTGTAGCAATTGtctttcaataatttgaagaaATCTTCGAGG AAAATTATAGAATATTTTTCTTGCAATAGACAAggttttatatattttga atttaGGTATATTTCGATGAATTTTTAGgggttttctccttttttttaca gaagCCTGTTTGCATGAATGTTAATGCATGAATGCTAACAGCTTTTTGTA CTATAttggtatttcattttctattgACCTATAACTTTTCGACTTTTGGG TGTAGGTGCTTTATCCCGACATAAATATTATCAAATGGTTTGCATTGATC tattaattctttcattagTAAGCAACTCCATNAAAATATTATCAAATGAT TTGCATTGATCtattaattctttcattagCAAGCAACTCCATGTGTAGCC GcagtttttcattaattttctaCCACATTACAGTATGTTCCAAGCTAAAA GGAAACAGTAACAGTTTTTGGttgtatttttaaaatatttattactTACG TAATTTTGattgagaaaaaatataaatttaccCTCTTCATAAAACGAAAT ATTATCCATCTCGACATTTTTATCCTGTGTCATACTTCTATTATATGTAT TGTATTTTGTAATCTACTacacaaaaaattaaacttgGACCGTAAA

Coding sequence (CDS) from alignment at scaffold_217:142211..159756+

>TCONS_00052518 ID=TCONS_00052518|Name=TCONS_00052518|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_217:142211..159756+ (Clytia hemisphaerica)
ATGATTGGGAAACTGATTTTTTTAGGCTGTTTTACTTATTGTGCTTCTTA
TTTCATCAATATTGATGCCCATGGAGAAGAATGTTTCCACGACCGTGTCA
ATCCAGGAACGAAAATGGCTCTTAGATTTGAAGTTGCTGATGGTGGATTT
TTAGATATCgatgtcaagATCACTGGACCTGACAACAAAGAAATTTACTC
AGGACAACGGGAGAGTAATGGAAAATACACTTTTGCTGCCCACATGGAAG
GAATCTACTCATACTGCTTTTCCAACAAAATGTCAACGATGACACCAAAG
ATCGTCAAATTTAGTATGGATATCGGTGAACCACCAAAAGATACCAGCAA
AGAAGATGCAGaacACCACGACAAACTGAACGACATGATCTCACAATTGA
CTTTATCATTAGCTGGTGTCAAACATGAACAAGAATACATGCAAGTTCGT
GATCGTGTACACAGAGCTAtCAACGACAGTACGAACAGCCGTGTGGTGTG
GTGGGCtttctttgaaagtttgatCCTCGTTTGTATGACCCTTGGACAAG
TATACTATCTGAAACGATTCTTTGAAGTCCGACGTGTCATCTAAATGATT
GGGAAACTGATTTTTTTAGGCTGTTTTACTTATTGTGCTTCTTATTTCAT
CAATATTGATGCCCATGGAGAAGAATGTTTCCACGACCGTGTCAATCCAG
GAACGAAAATGGCTCTTAGATTTGAAGTTGCTGATGGTGGATTTTTAGAT
ATCgatgtcaagATCACTGGACCTGACAACAAAGAAATTTACTCAGGACA
ACGGGAGAGTAATGGAAAATACACTTTTGCTGCCCACATGGAAGGAATCT
ACTCATACTGCTTTTCCAACAAAATGTCAACGATGACACCAAAGATCGTC
AAATTTAGTATGGATATCGGTGAACCACCAAAAGATACCAGCAAAGAAGA
TGCAGaacACCACGACAAACTGAACGACATGATCTCACAATTGACTTTAT
CATTAGCTGGTGTCAAACATGAACAAGAATACATGCAAGTTCGTGATCGT
GTACACAGAGCTAtCAACGACAGTACGAACAGCCGTGTGGTGTGGTGGGC
tttctttgaaagtttgatCCTCGTTTGTATGACCCTTGGACAAGTATACT
ATCTGAAACGATTCTTTGAAGTCCGACGTGTCATCTAAATGATTGGGAAA
CTGATTTTTTTAGGCTGTTTTACTTATTGTGCTTCTTATTTCATCAATAT
TGATGCCCATGGAGAAGAATGTTTCCACGACCGTGTCAATCCAGGAACGA
AAATGGCTCTTAGATTTGAAGTTGCTGATGGTGGATTTTTAGATATCgat
gtcaagATCACTGGACCTGACAACAAAGAAATTTACTCAGGACAACGGGA
GAGTAATGGAAAATACACTTTTGCTGCCCACATGGAAGGAATCTACTCAT
ACTGCTTTTCCAACAAAATGTCAACGATGACACCAAAGATCGTCAAATTT
AGTATGGATATCGGTGAACCACCAAAAGATACCAGCAAAGAAGATGCAGa
acACCACGACAAACTGAACGACATGATCTCACAATTGACTTTATCATTAG
CTGGTGTCAAACATGAACAAGAATACATGCAAGTTCGTGATCGTGTACAC
AGAGCTAtCAACGACAGTACGAACAGCCGTGTGGTGTGGTGGGCtttctt
tgaaagtttgatCCTCGTTTGTATGACCCTTGGACAAGTATACTATCTGA
AACGATTCTTTGAAGTCCGACGTGTCATCTAAATGATTGGGAAACTGATT
TTTTTAGGCTGTTTTACTTATTGTGCTTCTTATTTCATCAATATTGATGC
CCATGGAGAAGAATGTTTCCACGACCGTGTCAATCCAGGAACGAAAATGG
CTCTTAGATTTGAAGTTGCTGATGGTGGATTTTTAGATATCgatgtcaag
ATCACTGGACCTGACAACAAAGAAATTTACTCAGGACAACGGGAGAGTAA
TGGAAAATACACTTTTGCTGCCCACATGGAAGGAATCTACTCATACTGCT
TTTCCAACAAAATGTCAACGATGACACCAAAGATCGTCAAATTTAGTATG
GATATCGGTGAACCACCAAAAGATACCAGCAAAGAAGATGCAGaacACCA
CGACAAACTGAACGACATGATCTCACAATTGACTTTATCATTAGCTGGTG
TCAAACATGAACAAGAATACATGCAAGTTCGTGATCGTGTACACAGAGCT
AtCAACGACAGTACGAACAGCCGTGTGGTGTGGTGGGCtttctttgaaag
tttgatCCTCGTTTGTATGACCCTTGGACAAGTATACTATCTGAAACGAT
TCTTTGAAGTCCGACGTGTCATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033208XLOC_033208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052518-exon-scaffold_217-1491911889:142211..143101TCONS_00052518-exon-scaffold_217-1491911889:142211..143101Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1510915933:142211..143101TCONS_00052518-exon-scaffold_217-1510915933:142211..143101Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1575043694:142211..143101TCONS_00052518-exon-scaffold_217-1575043694:142211..143101Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1491911889:155686..155878TCONS_00052518-exon-scaffold_217-1491911889:155686..155878Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1510915933:155686..155878TCONS_00052518-exon-scaffold_217-1510915933:155686..155878Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1575043694:155686..155878TCONS_00052518-exon-scaffold_217-1575043694:155686..155878Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1491911889:156815..156922TCONS_00052518-exon-scaffold_217-1491911889:156815..156922Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1510915933:156815..156922TCONS_00052518-exon-scaffold_217-1510915933:156815..156922Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1575043694:156815..156922TCONS_00052518-exon-scaffold_217-1575043694:156815..156922Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1491911889:158319..159756TCONS_00052518-exon-scaffold_217-1491911889:158319..159756Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1510915933:158319..159756TCONS_00052518-exon-scaffold_217-1510915933:158319..159756Clytia hemisphaericaexon
TCONS_00052518-exon-scaffold_217-1575043694:158319..159756TCONS_00052518-exon-scaffold_217-1575043694:158319..159756Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052518-proteinTCONS_00052518-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:142211..159756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.5243 41.1406 27.2414 26.578 101.821 74.5063 221.944 226.72 113.059 105.42 86.6776 95.8589 51.9777 47.2654 62.1767 68.7526 70.9858 66.6682 24.993 38.6763 66.5911 65.9096 70.7516 74.4801 38.8898 46.9423 61.5886 42.495 77.1981 66.6015
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
Blast
BLAST of TCONS_00052518 vs. Swiss-Prot (Human)
Match: TMED2 (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 9.955e-90
Identity = 127/183 (69.40%), Postives = 155/183 (84.70%), Query Frame = 1
Query:  766 ASYFINIDAHGEECFHDRVNPGTKMALRFEVADGGFLDIDVKITGPDNKEIYSGQRESNGKYTFAAHMEGIYSYCFSNKMSTMTPKIVKFSMDIGEPPKDTSKEDAEHHDKLNDMISQLTLSLAGVKHEQEYMQVRDRVHRAINDSTNSRVVWWAFFESLILVCMTLGQVYYLKRFFEVRRVI 1314
            + YF++IDAH EECF +RV  GTKM L FEVA+GGFLDIDV+ITGPDNK IY G RES+GKYTFAAHM+G Y +CFSN+MSTMTPKIV F++DIGE PK    E   H +KL +MI++L +++  VKHEQEYM+VR+R+HRAIND+TNSRVV W+FFE+L+LV MTLGQ+YYLKRFFEVRRV+
Sbjct:   19 SGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201          
The following BLAST results are available for this feature:
BLAST of TCONS_00052518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMED29.955e-9069.40Transmembrane emp24 domain-containing protein 2 OS... [more]
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