TCONS_00052570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052570
Unique NameTCONS_00052570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052570 ID=TCONS_00052570|Name=TCONS_00052570|organism=Clytia hemisphaerica|type=transcript|length=526bp
ATNGAATCACAGATTCTGAAATATGATTGGGTAGAGGAACTCTTGACTTC
AAATGTATCTGccgaaagtttgaaatatttgttcaGACTCATTGACACAA
TAgtaatttttcatgaaaagatTGACGAAGAATCCAGTGAAACACCTGAA
TTAGACGatgactttctttttgcatacgGCGAATGGTTGCTGGCGCTGGT
AAAAGATTCTGTTGATGATGATTCTAGTTTTGAGTGGCTACTCAAATTCC
TATACATGGATTTGACAAGTCGAATTCGGAAAGTTGAATCAATGGAAGGA
TTTTTAGATCTAGAAAATACTAAAATGGTCATTGAAATCTTATTTGATTA
TGCGAAAGTTTTTGAAGATGGAATGAAGAGCAAAGTATTGCAAGAGATCT
TTAACTTTCTATGTAGTGGACTTGAAACGAACGTGGAAAGAAATATTCTA
CTTAGTGTCCATTTACCAAATATCACTGCTATGGatatgggttgTACTGT
TTTTCTTAACGAGCatgaaaaatgct
Run BLAST on NCBI

transcript from alignment at scaffold_218:285285..287263+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052570 ID=TCONS_00052570|Name=TCONS_00052570|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at scaffold_218:285285..287263+ (Clytia hemisphaerica)
ATNGAATCACAGATTCTGAAATATGATTGGGTAGAGGAACTCTTGACTTC
AAATGTATCTGccgaaagtttgaaatatttgttcaGACTCATTGACACAA
TAgtaatttttcatgaaaagatTGACGAAGAATCCAGTGAAACACCTGAA
TTAGACGatgactttctttttgcatacgGCGAATGGTTGCTGGCGCTGGT
AAAAGATTCTGTTGATGATGATTCTAGTTTTGAGTGGCTACTCAAATTCC
TATACATGGATTTGACAAGTCGAATTCGGAAAGTTGAATCAATGGAAGGA
TTTTTAGATCTAGAAAATACTAAAATGGTCATTGAAATCTTATTTGATTA
TGCGAAAGGTATTTTAAGCAATACTACcatatgttttttgttttgcgtAA
CAATAACCGATACTGCATTTCCACGATATAGACTCGACCTCcaatacacc
ccttctcacagacctactgGGACCCTTTCTTACTGGAAAAATGGACTAAA
ATATCCTcctcggtggaaaattatcttcAAATTTTTTACCCACTATCCTC
GCAACTCCAATAAATGTTCTGACTCGAAAACAAAAGCATCGAAATCTTCA
GCCATAAAAGATATGGGAATAACAATCGAGTTTCAGTCTGAGTTATTTTT
agccccactggctgaaaaaatgctaTCAGGTTTGTGATAAGGGGATGTTC
TAATCGAACTGAAAAGAGTGCGGCGGATTACAAACTTACTAATCTACCAA
AATTTGATGTATTAATAATAGAAATTTCACCCTTTCGATCTTTTGGCAAG
AAAATCGACGCTCTAAAGAGCGGCACAtataaaatctagaaaatttgaCT
AGCGCCACTGCATTAGTTTAGAAAACTTCCTAACCCTACCTTTCTATGTT
ATTTTGTTTCAGTTTTTGAAGATGGAATGAAGAGCAAAGTATTGCAAGAG
ATCTTTAACTTTCTATGTAGTGGACTTGAAACGAACGTGGAAAGAAATAT
TCTACTTAGTGTCCATTTACCAAATATCACTGCTATGGGTACGTACGTTC
ACATCACTGATTTTTATATATCCccggaccaagctatatccgccatcttt
gattgaagttttttttttaagtacccgcaaagaagccattgtagtgttgt
tattttttttgtttttttattgaaacaaagacaCGTGTACACTACTAGTG
CAGTCTAAATGTGCCAAAAGTTATTAACATTGTGCACAAAGGCGTACAAG
CATGAGACTTTGCACAATTGTAGcttaggggtcaaaaatggatttaaatc
tcagacccaaaaaattggcacctgtttgtgtattttacagaccagaacag
gttcccaggctaaaatgaactctttttttctccaaagtatgtcatgttac
ataccgttggaaagcatttttcatGCTCATTTAGaaaaaacattacaacc
catatctgaaaatgaagccaaaaAAGTTATTGTGGaaggctttttgaaaa
atgcagaaaaacaacgtaattgctgacgtcatcaaaaactcCAGGACCAC
TCGAAGACatttgtttttgtgaaattcGATAATGCACCTCTCGGGTACTA
AATACGATTAATAAGATGCAAACTTATTTTACAATAACTTTTCGAGTATG
GTTAGGGTGGGAAATTTTGCCTTAGAAGTGCTTATCATGGGCATGCCCGA
TGCAACCCATTTAGCCTAAGGCTTGTGAAGGGTCATAAAAACGCGATATT
CAATGTCAATGGAGTCTAACTCTCAACCAAAGCTATCCATTTAGACATTG
AAAGGTCCTCTATTTAATTTGATAGAAATAAACTTTTTCGGGTGGTCCtt
gaatttttgctgacgtcagcaattacGTAATTTTTCTGCGTCTTTTGAAA
AGCCTTCCTCAATAACCTTttttggcttcattttcagatatgggttgTAC
TGTTTTTCTTAACGAGCatgaaaaatgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033244XLOC_033244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052570-exon-scaffold_218-1491911889:285285..285642TCONS_00052570-exon-scaffold_218-1491911889:285285..285642Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1510915933:285285..285642TCONS_00052570-exon-scaffold_218-1510915933:285285..285642Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1575043694:285285..285642TCONS_00052570-exon-scaffold_218-1575043694:285285..285642Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1491911889:286197..286322TCONS_00052570-exon-scaffold_218-1491911889:286197..286322Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1510915933:286197..286322TCONS_00052570-exon-scaffold_218-1510915933:286197..286322Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1575043694:286197..286322TCONS_00052570-exon-scaffold_218-1575043694:286197..286322Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1491911889:287222..287263TCONS_00052570-exon-scaffold_218-1491911889:287222..287263Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1510915933:287222..287263TCONS_00052570-exon-scaffold_218-1510915933:287222..287263Clytia hemisphaericaexon
TCONS_00052570-exon-scaffold_218-1575043694:287222..287263TCONS_00052570-exon-scaffold_218-1575043694:287222..287263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:285285..287263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4188	0.236313	0.416492	1.04583e-07	0	0.252309	0.15844	0.429374	0.475923	0	0	0.730956	0.11382	0.296617	0.411567	0.06497	0.167924	0.542089	0.20739	0	2.26378	2.04353	2.13772	0.633646	0	0	0.900948	1.02953	0.22895	1.57509
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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