TCONS_00052669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052669
Unique NameTCONS_00052669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052669 ID=TCONS_00052669|Name=TCONS_00052669|organism=Clytia hemisphaerica|type=transcript|length=938bp
TTGATGTGGATGGGATCCTTAACGAAGTCAATACCTTTGTCAATGCAGGC
TACGAGACAACCTCGACATCACTTGCGTGGACTTTGTACTGTCTGGGAAG
GAACCAGAGAGTACAAGAAAAGCTCTACAATGAAATAATCCGTTttgaga
aagataaaaaattgcaAATGGAAGATTTTAAAGAATTGCCTTACCTGGAT
TTAGTTGTGAAAGAATCATTACGTCTGCATCCAGCAATCACAAGATTCGG
TCGACAAATAGCAGATGGGACTGTGCTTGGTGGTAAAGTTTTCCCCGACT
GTACTTTGGTTATTGATATCGTTGCTATGAATCGGAATCCTGATGTCTGG
GAGGATCCACTAACTTTCAATCCTGAACGGTTTGAAACCTTTGACAAGCA
AAGCAAACGAAATCCGTTCCTCTACGTTCCTTTTTCAGCTGGTCCTCGTA
ATTGCATCGGTCAAAAATTTGCACTCAGTGAATTGAAAGCAGCGGTCTTT
CATTTGGTGAAACATTTAGAGTTGATTTCACTTCAAGATGAAAGTGAATT
GAAGGAAACTTTTGATTTGACTCATGGCTGTGAGAACGGACCAATGCTTA
AGATTAAACCTAGGAATtaacattaaatttgaatttttaaaagtagatat
tgatttttcattctgttttttttgtaatacgACATTTGTAAATCGTAGCA
GGACCCAAAGAGTTAGTGACTAATTTTAAGGTCCTCCCATTCGTAAAGTG
ACAGTTTTAATGTATTTCTCTCAGATTTTGATTATAAGAATGCATTGATT
CAGCTTGAAGAATCCATACTACCATGGTTATCGTAttccttcgaataaac
gccctggGCGTTTATTGAATAATCTTCAACCTAGGTCACTTTAATAAGGG
AACCTTGCTTAGCCTTTTCGATATCTTTCAGCTCAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_218:333294..336109-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052669 ID=TCONS_00052669|Name=TCONS_00052669|organism=Clytia hemisphaerica|type=transcript|length=2816bp|location=Sequence derived from alignment at scaffold_218:333294..336109- (Clytia hemisphaerica)
TTGATGTGGATGGGATCCTTAACGAAGTCAATACCTTTGTCAATGCAGGC
TACGAGACAACCTCGACATCTCTTGCGTGGACTTTGTACTGTCTGGGAAG
GAACCAGAGAGTACAAGAAAAGCTCTACAATGAAATAATCCGTTTTGAGA
AAGATAAAAAATTGCAAATGGAAGACTTTAAGGAATTACCTTATCTTGAT
CTCGTAATTAAAGAATCGTTACGTTTACATCCTGCGGTTCCACGTTTCAG
CCGACGCATTCCCGATGGTACTCTTCTCGGAGGAAAAGTTTTCCCTTATT
GTACGCTAATAATTGATCTTATTGAAATGAATCGAAATCCTGAAGTATGG
GAAGATCCACTAACTTTCAATCCTGAACGGTTTGAAGATTTTAAATTGAA
AGGCAATAAACGAAACCCATTTCTTTTCGTCCCTTTCTCAGCTGGTCCTC
GTAATTGCATCGGACAAAAATTTGCACTCAGTGAGTTGAAAGCAGCGGTC
TTTCATTTGGTGAAACATTTAGAGTTCATCTCTCTTCAAGATGAAAGTGA
ATTGATAGAGACATTGGACTTGATTCATGGCTGTGAGAACGGGCCAATGA
TGAAAGTGAAACCTCGAAAGTAGATAACCTTACCAAGATTTTAATAAAAT
TTAATTTTTGTTTTAATAGAACTAACCTAACAAAGAAAATTAAACTACTA
ATTTGGTGAATTGATTTCTAAAGTATTTTTCTTTGGCTGACATGTCCTAT
CATATAGCTGGAAACACTGGAAATTACCACCGAAAGTTTCTGTCTATTGA
TTTCAGTCTTAGCAAACACTGCTCTTTTACAACTCGATTGTTCCAAAAGT
TGGTAGTTATTTTAATTGATCTTCAAGGTCCTGAATTTTCTGCATATTTA
ACAAGGATACGTATTACGGAGAGCTTTTCTGTAAGGCTGTTTTCTCAATT
TTAGGGAAAAAATGACGAAAATATAAAATTACAAGGTGAAAAGGAGATAA
CCCCAGGTTAAACATAATAAAAATGTTTTTGACAATTCTCGGATCGATCT
TTGTCATATTGGCGTCATATTTGGTTTTTTCTTGGCTTCGTGTGAAATGG
ACTGACAAAGGTTGGATTTACTATCTTCCTGGTGGGCTACCTTTGATTGG
ACATGTCTTTGTTTTACAAAATCGTAAGAAATATCATGAGCTCAAGGATG
GTTGGTATCGAGAATCTAAAGGGACTTACGGCGTTTATTTATTACTAGAT
CGTATATTGTTATCAATGGATTTAAAAGTCTGGGAAGACTTGTTATCCAG
TCAAAAGTATTTAGATAAAGGACAAGGGTATTGGATTCTTGAGAAATTCC
TTGGTAATGGTTTAGTGACAAGCACTGGAGATTTATGGAAAAAGCGTCGA
CGAATGATTACGCCTGCTTTTCATTTTGAAATTTTGAACGAGTTCGTTTC
CATCATGGAAAATCGGACTTTGGAATTGATTGAAATGTTGAAAAAGTTTC
ACGAGAAAGATGAATCTTTTAACGCTTTTGATATCACTAAACCGTTTTCG
TTGAGTATTATTTGTGAAACTTCGATGGGGATTAATCTCTCAATCGAGGA
AACCTCAAGTGGAAGATTCAAGAAAATGTACGAAAGACTCATTCATGTTT
TATTTCGACGACAACTTAATCCTTTGATGAAAAACGATTGGCTTTATTCG
ATGACAGCTGATGGCAAAGCTTTCTATGCTGCGTTTAAAGAAATTACTGC
ATTTGTTAAAGAAGTCATTGAAAAACGGATCGAAGTTCAACGGAATCCTG
ACAAAGCTGAAGAGATGAAACATACTAAACGAAGGATTTTCATCGATACT
TTGTTAGATTCTTACGAAAAAGGTGATATTGATGTCGATGGGATCCTTAA
CGAAGTCAATACCTTTGTCAATGCCGGATACGAGACAACCTCGACATCAC
TTGCGTGGACTTTGTACTGTCTGGGAAGGAACCAGAGAGTACAAGAAAAG
CTCTACAATGAAATAATCCGTTTTGAGAAAGATAAAAAATTGCAAATGGA
AGATTTTAAAGAATTGCCTTACCTGGATTTAGTTGTGAAAGAATCATTAC
GTCTGCATCCAGCAATCACAAGATTCGGTCGACAAATAGCAGATGGGACT
GTGCTTGGTGGTAAAGTTTTCCCCGACTGTACTTTGGTTATTGATATCGT
TGCTATGAATCGGAATCCTGATGTCTGGGAGGATCCACTAACTTTCAATC
CTGAACGGTTTGAAACCTTTGACAAGCAAAGCAAACGAAATCCGTTCCTC
TACGTTCCTTTTTCAGCTGGTCCTCGTAATTGCATCGGTCAAAAATTTGC
ACTCAGTGAATTGAAAGCAGCGGTCTTTCATTTGGTGAAACATTTAGAGT
TGATTTCACTTCAAGATGAAAGTGAATTGAAGGAAACTTTTGATTTGACT
CATGGCTGTGAGAACGGACCAATGCTTAAGATTAAACCTAGGAATTAACA
TTAAATTTGAATTTTTAAAAGTAGATATTGATTTTTCATTCTGTTTTTTT
TGTAATACGACATTTGTAAATCGTAGCAGGACCCAAAGAGTTAGTGACTA
ATTTTAAGGTCCTCCCATTCGTAAAGTGACAGTTTTAATGTATTTCTCTC
AGATTTTGATTATAAGAATGCATTGATTCAGCTTGAAGAATCCATACTAC
CATGGTTATCGTATTCCTTCGAATAAACGCCCTGGGCGTTTATTGAATAA
TCTTCAACCTAGGTCACTTTAATAAGGGAACCTTGCTTAGCCTTTTCGAT
ATCTTTCAGCTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033275XLOC_033275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052669-exon-scaffold_218-1575043694:336043..336109TCONS_00052669-exon-scaffold_218-1575043694:336043..336109Clytia hemisphaericaexon
TCONS_00052669-exon-scaffold_218-1575043694:333294..334164TCONS_00052669-exon-scaffold_218-1575043694:333294..334164Clytia hemisphaericaexon
TCONS_00052669-exon-scaffold_218-1510915933:336043..336109TCONS_00052669-exon-scaffold_218-1510915933:336043..336109Clytia hemisphaericaexon
TCONS_00052669-exon-scaffold_218-1510915933:333294..334164TCONS_00052669-exon-scaffold_218-1510915933:333294..334164Clytia hemisphaericaexon
TCONS_00052669-exon-scaffold_218-1491911889:336043..336109TCONS_00052669-exon-scaffold_218-1491911889:336043..336109Clytia hemisphaericaexon
TCONS_00052669-exon-scaffold_218-1491911889:333294..334164TCONS_00052669-exon-scaffold_218-1491911889:333294..334164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:333294..336109 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.164607	0.279986	0.382936	0	0	1.23947e-09	0.305809	0	0	0	0	0	0	0	0	0	0	0	0	0.015268	0	0.278632
Blast
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BLAST of TCONS_00052669 vs. Swiss-Prot (Human)
Match: CP4FC (Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-40
Identity = 79/208 (37.98%), Postives = 121/208 (58.17%), Query Frame = 3 
Query:    9 DGILNEVNTFVNAGYETTSTSLAWTLYCLGRNQRVQEKLYNEIIRFEKD---KKLQMEDFKELPYLDLVVKESLRLHPAITRFGRQIADGTVL-GGKVFPD-CTLVIDIVAMNRNPDVWEDPLTFNPERFETFDKQSKRNPFLYVPFSAGPRNCIGQKFALSELKAAVFHLVKHLELISLQDESELKETFDLTHGCENGPMLKIKPRN 617
            + I  E +TF+  G++TT++ L+W LY L R+   QE+   E+    KD   K+++ +D  +LP+L + VKESLRLHP      R      VL  G+V P   T +IDI+ ++ NP VW DP  ++P RF+  +    R+P  ++PFSAGPRNCIGQ FA++E+K  +  ++ H     L D +E +   +L    E G  L+++P N
Sbjct:  316 EDIRAEADTFMFGGHDTTASGLSWVLYNLARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVLPDGRVIPKGITCLIDIIGVHHNPTVWPDPEVYDPFRFDP-ENSKGRSPLAFIPFSAGPRNCIGQAFAMAEMKVVLALMLLHFRF--LPDHTEPRRKLELIMRAEGGLWLRVEPLN 520
The following BLAST results are available for this feature:
BLAST of TCONS_00052669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4FC1.482e-4037.98Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE... [more]
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