TCONS_00052672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052672
Unique NameTCONS_00052672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052672 ID=TCONS_00052672|Name=TCONS_00052672|organism=Clytia hemisphaerica|type=transcript|length=810bp
tCTAGTTGTAAAAATGGACCTTtcagcctcctgcaactcaaccaaataga
aatagaaaaaaaaccaTGTTACTATTTTGCTTTTTAAATGATATTTGAAT
ACCACCTGGTTTAACACAGttattgttttcctttttttacaGGACCATGA
ATATACAGTCATCGATACTGCACAAGGTGTCTGGTGGTATGCTCGAGACA
GTTTAGGaaATAAAGGGTACATTCCAGCAAATTATGTAACTAAACATACT
GGCATCGAATCTGAAAAATGGTACCATGGAGATATGACGAGACAGGAGGC
AGATGTAACACTTAAGaGCCGTGATGACGGTACATTTATAGTTCGAAATT
CGAGCCAACCTGGAATGTATACACTCTCCTTTTGCTTTCAAAGAGTGGTC
AAACACTATCACATTAAAGTCGATgcagaaaataaattttacgtTTCACA
AAGACATCATTTTGATTCAGTCTCCAAACTTATCGAGTATCATAAACTCA
ACAGTGCAGGTCTGGTCACACGGTTGAGAATACCATATCTTGGAACGGAA
CCTCCTCCTGTTATGCTTGGATACGGCGTTTTCCAAATCAATCGAAGTGA
GCTTCTTTTCAAGAGAGAGATTGGTGCAGGACAATTTGGAACAGTACATG
AGGCAATATGGCGGAAAGAGAAACTTGTTGCCGTCAAACAAATGAAACCG
GACTCCATGAACACGCATGATTTCATAGAAGAGGCTAAAATGATGCAGTA
agagaaaaaatatcaatttcccATAGAAGTTCTGAGTATTTtctttctta
tagaaaaatg
Run BLAST on NCBI

protein sequence of TCONS_00052672-protein

>TCONS_00052672-protein ID=TCONS_00052672-protein|Name=TCONS_00052672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MTRQEADVTLKSRDDGTFIVRNSSQPGMYTLSFCFQRVVKHYHIKVDAEN
KFYVSQRHHFDSVSKLIEYHKLNSAGLVTRLRIPYLGTEPPPVMLGYGVF
QINRSELLFKREIGAGQFGTVHEAIWRKEKLVAVKQMKPDSMNTHDFIEE
AKMMQ
Run BLAST on NCBI

transcript from alignment at scaffold_218:349112..351544-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052672 ID=TCONS_00052672|Name=TCONS_00052672|organism=Clytia hemisphaerica|type=transcript|length=2433bp|location=Sequence derived from alignment at scaffold_218:349112..351544- (Clytia hemisphaerica)
TCTAGTTGTAAAAATGGACCTTTCAGCCTCCTGCAACTCAACCAAATAGA
AATAGAAAAAAAACCATGTTACTATTTTGCTTTTTAAATGATATTTGAAT
ACCACCTGGTTTAACACAGTTATTGTTTTCCTTTTTTTACAGGACCATGA
ATATACAGTCATCGATACTGCACAAGGTGTCTGGTGGTATGCTCGAGACA
GTTTAGGGTATGATTTTATTATATTAAAAAAATGCTCCAAAGTTACTCTA
GCACTGGTGATTCAGATTACCTTATTTTTTAGTTACTTGCTGCTACAAAA
TGGCTTATAAAATATTTCTACTTTTATTTTTTTGCTTAGGCTTTTGGTTT
TGTAATGCAACCAACATGGATACTGAATTTGGGGTTAAAACAAAAATAAA
AGCATGAATTAACACAGAAATTATGTCACGCAACTTATAGGATTTCGTTG
CTGAAAATGAGTGCCAGCATGATTATTGTTTTTTTTTCTCTTAGAAATAA
AGGGTACATTCCAGCAAATTATGTAACTAAACATACTGGCATCGAATCTG
AAAAGTAAGGCAATGCATGAACTTATATACGAGTCATTCTTGTGAGATCT
TTGGAATCTGACACAAAATGTAATGCTCTTTTTCAAACATATGTCTGTCT
GCCCCTGTCTGCCCAAATATTTTAGAGTAGCTTGAAGACTTGGCTGAAAT
TTTAAACACTTATACCTTGAGTTATACCTATTTTTCAATGTACGCTATCA
AACACTTTATCATCGACCTTTCTAGATGGTACCATGGAGATATGACGAGA
CAGGAGGCAGATGTAACACTTAAGGTACTTTATATTTTAAATGACTGGCG
TGTTTATTCACGCAGAAATTGATTTACTTCTTGTTTTCCCCCTAAAGGCT
AATTTTGGTAATGACTTTTGCTTAAAAAACCTGTAACTTGCAAATTGAAT
TCCTTCTGGTACTTGGATAGACGTTGGATAGAAAATATTTTTCCTGATAC
TTTTAATTGTATTCGTGAGGACTTCTATCAGCTTGCCAGAAAAACATTTT
GAACATAGCTTATGTTAGGATACCAAATGACCTTTTCTTTGCAACTTACA
ACGATATTTTATTTCTTTTCAGAGCCGTGATGACGGTACATTTATAGTTC
GAAATTCGAGCCAACCTGGAATGTATACACTCTCCTTTTGGTAAGTTTAA
TGTCTTTGGAAAAGAAGTTCTCCAGAAACCCATATTATTGACATCCATCA
ACTGTTCTGAAGGGTAACCTCGCTAAAGGCGAATTGTAGATTTAATATGG
GCTTCAGGAATCTGAATGGAGGAAGGGAGGAACATTACATTTTAAGGAAA
ATACAATATTTAGAAACTGTGATATTTTTCTTTCATAAATCTCCAAATGT
CTTCATCAGTCTTTAAAATGTTTTAAAAACTACATAATTCTTACCAGAAG
ATAGAAATAAATTATGACATATAGAATGATATTCTTTTGAGTTAAAGAGA
ACCAAAAACAACACTTTTCTGTGGGTCATGTGAAAAAATGGTCGAAGCTT
ATCTGGACAGCTCTCAAAACATGACATCCTCAACAATATTATTGTTAATC
TTCTCAATTTCAGCTTTCAAAGAGTGGTCAAACACTATCACATTAAAGTC
GATGCAGAAAATAAATTTTACGTTTCACAAAGACATCATTTTGATTCAGT
CTCCAAACTTATCGAGTATCATAAACTCAACAGTGCAGGTATGTACACGG
ATGGTCTCCCTTTCGATTGAGTATCAATCCTGTCTTTTTATTTAATTCAT
CTTATTATTTCTTTCATTCTACGTAATACATTCATGGAGGGAACTAAAAA
TATATCTGAAATATTCAAGTAACAAAAAGTACTTGTTGAGTGGGACTGCT
TTAATAAGCTTTTTGTTTTTCGTTGGTAGGTCTGGTCACACGGTTGAGAA
TACCATATCTTGGAACGGAACCTCCTCCTGTTATGCTTGGATACGGTAAA
GAATGGTTTTGCTTTATGCTAAAAGATTAAGTTTGAAGTTTAACTTTCGG
ACCGTAGGGGTGTAGGAATGGGTGCCAGCAGCGTGATCTCTTTCTGCAAA
AGGAAAGATAGGAATAATCACATGTTAAAATGAAAATAATCAAAATTTGA
ACTTATCTGAACCAATATTTATCTCCCTCCCCTTGCATTTATTCCCAGGC
GTTTTCCAAATCAATCGAAGTGAGCTTCTTTTCAAGAGAGAGATTGGTGC
AGGACAATTTGGAACAGTACATGAGGCAATATGGCGGAAAGAGAAACTTG
TTGCCGTCAAACAAATGAAACCGGACTCCATGAACACGCATGATTTCATA
GAAGAGGCTAAAATGATGCAGTAAGAGAAAAAATATCAATTTCCCATAGA
AGTTCTGAGTATTTTCTTTCTTATAGAAAAATG

Coding sequence (CDS) from alignment at scaffold_218:349112..351544-

>TCONS_00052672 ID=TCONS_00052672|Name=TCONS_00052672|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_218:349112..351544- (Clytia hemisphaerica)
GCGTTTTCCAAATCAATCGAAGTGAGCTTCTTTTCAAGAGAGAGATTGGT
GCAGGACAATTTGGAACAGTACATGAGGCAATATGGCGGAAAGAGAAACT
TGTTGCCGTCAAACAAATGAAACCGGACTCCATGAACACGCATGATTTCA
TAGAAGAGGCTAAAATGATGCAGTAAGTCTGGTCACACGGTTGAGAATAC
CATATCTTGGAACGGAACCTCCTCCTGTTATGCTTGGATACGCTTTCAAA
GAGTGGTCAAACACTATCACATTAAAGTCGATGCAGAAAATAAATTTTAC
GTTTCACAAAGACATCATTTTGATTCAGTCTCCAAACTTATCGAGTATCA
TAAACTCAACAGTGCAGAGCCGTGATGACGGTACATTTATAGTTCGAAAT
TCGAGCCAACCTGGAATGTATACACTCTCCTTTTGATGACGAGACAGGAG
GCAGATGTAACACTTAAGGCGTTTTCCAAATCAATCGAAGTGAGCTTCTT
TTCAAGAGAGAGATTGGTGCAGGACAATTTGGAACAGTACATGAGGCAAT
ATGGCGGAAAGAGAAACTTGTTGCCGTCAAACAAATGAAACCGGACTCCA
TGAACACGCATGATTTCATAGAAGAGGCTAAAATGATGCAGTAAGTCTGG
TCACACGGTTGAGAATACCATATCTTGGAACGGAACCTCCTCCTGTTATG
CTTGGATACGCTTTCAAAGAGTGGTCAAACACTATCACATTAAAGTCGAT
GCAGAAAATAAATTTTACGTTTCACAAAGACATCATTTTGATTCAGTCTC
CAAACTTATCGAGTATCATAAACTCAACAGTGCAGAGCCGTGATGACGGT
ACATTTATAGTTCGAAATTCGAGCCAACCTGGAATGTATACACTCTCCTT
TTGATGACGAGACAGGAGGCAGATGTAACACTTAAGGCGTTTTCCAAATC
AATCGAAGTGAGCTTCTTTTCAAGAGAGAGATTGGTGCAGGACAATTTGG
AACAGTACATGAGGCAATATGGCGGAAAGAGAAACTTGTTGCCGTCAAAC
AAATGAAACCGGACTCCATGAACACGCATGATTTCATAGAAGAGGCTAAA
ATGATGCAGTAAGTCTGGTCACACGGTTGAGAATACCATATCTTGGAACG
GAACCTCCTCCTGTTATGCTTGGATACGCTTTCAAAGAGTGGTCAAACAC
TATCACATTAAAGTCGATGCAGAAAATAAATTTTACGTTTCACAAAGACA
TCATTTTGATTCAGTCTCCAAACTTATCGAGTATCATAAACTCAACAGTG
CAGAGCCGTGATGACGGTACATTTATAGTTCGAAATTCGAGCCAACCTGG
AATGTATACACTCTCCTTTTGATGACGAGACAGGAGGCAGATGTAACACT
TAAGGCGTTTTCCAAATCAATCGAAGTGAGCTTCTTTTCAAGAGAGAGAT
TGGTGCAGGACAATTTGGAACAGTACATGAGGCAATATGGCGGAAAGAGA
AACTTGTTGCCGTCAAACAAATGAAACCGGACTCCATGAACACGCATGAT
TTCATAGAAGAGGCTAAAATGATGCAGTAAGTCTGGTCACACGGTTGAGA
ATACCATATCTTGGAACGGAACCTCCTCCTGTTATGCTTGGATACGCTTT
CAAAGAGTGGTCAAACACTATCACATTAAAGTCGATGCAGAAAATAAATT
TTACGTTTCACAAAGACATCATTTTGATTCAGTCTCCAAACTTATCGAGT
ATCATAAACTCAACAGTGCAGAGCCGTGATGACGGTACATTTATAGTTCG
AAATTCGAGCCAACCTGGAATGTATACACTCTCCTTTTGATGACGAGACA
GGAGGCAGATGTAACACTTAAGGCGTTTTCCAAATCAATCGAAGTGAGCT
TCTTTTCAAGAGAGAGATTGGTGCAGGACAATTTGGAACAGTACATGAGG
CAATATGGCGGAAAGAGAAACTTGTTGCCGTCAAACAAATGAAACCGGAC
TCCATGAACACGCATGATTTCATAGAAGAGGCTAAAATGATGCAGTAAGT
CTGGTCACACGGTTGAGAATACCATATCTTGGAACGGAACCTCCTCCTGT
TATGCTTGGATACGCTTTCAAAGAGTGGTCAAACACTATCACATTAAAGT
CGATGCAGAAAATAAATTTTACGTTTCACAAAGACATCATTTTGATTCAG
TCTCCAAACTTATCGAGTATCATAAACTCAACAGTGCAGAGCCGTGATGA
CGGTACATTTATAGTTCGAAATTCGAGCCAACCTGGAATGTATACACTCT
CCTTTTGATGACGAGACAGGAGGCAGATGTAACACTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033277XLOC_033277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052672-exon-scaffold_218-1575043694:351338..351544TCONS_00052672-exon-scaffold_218-1575043694:351338..351544Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1575043694:350991..351050TCONS_00052672-exon-scaffold_218-1575043694:350991..351050Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1575043694:350721..350769TCONS_00052672-exon-scaffold_218-1575043694:350721..350769Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1575043694:350355..350422TCONS_00052672-exon-scaffold_218-1575043694:350355..350422Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1575043694:349807..349931TCONS_00052672-exon-scaffold_218-1575043694:349807..349931Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1575043694:349550..349615TCONS_00052672-exon-scaffold_218-1575043694:349550..349615Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1575043694:349112..349346TCONS_00052672-exon-scaffold_218-1575043694:349112..349346Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:351338..351544TCONS_00052672-exon-scaffold_218-1510915933:351338..351544Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:350991..351050TCONS_00052672-exon-scaffold_218-1510915933:350991..351050Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:350721..350769TCONS_00052672-exon-scaffold_218-1510915933:350721..350769Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:350355..350422TCONS_00052672-exon-scaffold_218-1510915933:350355..350422Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:349807..349931TCONS_00052672-exon-scaffold_218-1510915933:349807..349931Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:349550..349615TCONS_00052672-exon-scaffold_218-1510915933:349550..349615Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1510915933:349112..349346TCONS_00052672-exon-scaffold_218-1510915933:349112..349346Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:351338..351544TCONS_00052672-exon-scaffold_218-1491911889:351338..351544Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:350991..351050TCONS_00052672-exon-scaffold_218-1491911889:350991..351050Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:350721..350769TCONS_00052672-exon-scaffold_218-1491911889:350721..350769Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:350355..350422TCONS_00052672-exon-scaffold_218-1491911889:350355..350422Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:349807..349931TCONS_00052672-exon-scaffold_218-1491911889:349807..349931Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:349550..349615TCONS_00052672-exon-scaffold_218-1491911889:349550..349615Clytia hemisphaericaexon
TCONS_00052672-exon-scaffold_218-1491911889:349112..349346TCONS_00052672-exon-scaffold_218-1491911889:349112..349346Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052672-proteinTCONS_00052672-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:349112..351544 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.26084	5.98673	2.00514	1.45713	39.5149	32.3127	31.0091	33.2518	22.2855	25.9406	21.8294	14.9788	22.1033	20.0189	13.0727	12.7341	23.1913	23.1578	15.4369	26.2003	21.1747	17.2045	13.6722	16.1836	16.2755	17.9875	33.2678	25.7427	28.6978	27.9701
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR017441Protein_kinase_ATP_BS
IPR000719Prot_kinase_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00052672 vs. Swiss-Prot (Human)
Match: TEC (Tyrosine-protein kinase Tec OS=Homo sapiens GN=TEC PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.277e-48
Identity = 92/214 (42.99%), Postives = 131/214 (61.21%), Query Frame = 2 
Query:  146 HEYTVIDTAQGVWWYARDSLGNKGYIPANYVT--KHTGIESEKWYHGDMTRQEADVTLKSRD-DGTFIVRNSSQPGMYTLSFCFQ------RVVKHYHIK--VDAENKFYVSQRHHFDSVSKLIEYHKLNSAGLVTRLRIPYL---GTEPPPVMLGYGVFQINRSELLFKREIGAGQFGTVHEAIWRKEKLVAVKQMKPDSMNTHDFIEEAKMM 745
             EY +++     WW ARD  GN+GYIP+NYVT  K   ++  +WY  +M R +A+  L+S D +G F+VR+SSQPG+YT+S   +         +HYHIK    +  K+Y++++H F S+ ++IEYHK N+AGLVTRLR P        P      Y  ++IN SEL F RE+G+G FG V    WR +  VA+K ++  +M   DFIEEAK+M
Sbjct:  204 QEYLILEKNDVHWWRARDKYGNEGYIPSNYVTGKKSNNLDQYEWYCRNMNRSKAEQLLRSEDKEGGFMVRDSSQPGLYTVSLYTKFGGEGSSGFRHYHIKETTTSPKKYYLAEKHAFGSIPEIIEYHKHNAAGLVTRLRYPVSVKGKNAPTTAGFSYEKWEINPSELTFMRELGSGLFGVVRLGKWRAQYKVAIKAIREGAMCEEDFIEEAKVM 417
The following BLAST results are available for this feature:
BLAST of TCONS_00052672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEC4.277e-4842.99Tyrosine-protein kinase Tec OS=Homo sapiens GN=TEC... [more]
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