TCONS_00052673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052673
Unique NameTCONS_00052673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052673 ID=TCONS_00052673|Name=TCONS_00052673|organism=Clytia hemisphaerica|type=transcript|length=1348bp
CTTTAATCCTCTAAGAGCGTAAACTTTGAATTTTGGAATCTTTTTTCGGT
AATAAAAGTAGGAGTGGCAAAACCGCCGTTTTTCCGCTTTTGTTAACATA
TTCGGGCATCTGGTTTTCGGAGGCGAATAAAATCTCCTTACCAGGCCCTT
GGCGTGTAGCACAAGACAAGAAAGGCGAGAATTTTGTGAAGAGGTAAAAA
GTacctcaaaaaatattcatcaaGCTGTTAGAGGGGATACACAATTCTCC
CTtctaaaaccttaaaaatatatatacatgGCTTTAAAAAGGATAACAAA
GGAATTGACAGATTTAGGGAGGGATCCACCAGCACAATGTTCAGCTGGAC
CTATAGATGAAAAAGATATGTTTAAATGGCAAGCTACTATAATGGGACCA
ACGGAAAGTCCATATCAAGGTGGCGTATTTTTTCTTACAATCAACTTTCC
ACCAGATTATCCTTTCAAACCACCAAAAGTCACATTTGTTACAAGAATAT
ACCACCCCAATATTAATAGCAATGGAAGTATCTGTTTGGATATTCTAAGA
CAACAATGGAGTCCTGCTCTAACAATATCAAAAGtACTATTATCTATATG
TTCACTACTGACGGACCCTAATCCTGAAGATCCATTGGTACCAGAAATAG
CAAGAATCTATAAAAGTGATCGTTCTCGATACAGTGACCTTGCAAAAGAG
TGGACCAAGAAGTATGCCATGTGATCGGTCATCTAACTAGTAGCCTTCGT
TTAACGACGATTTAAGGTTCTGGAAAGGAGGAAAAGTGTAGAATCTAACA
GCTAATGAAGTCTTcgcattgtttttttatttcgaagcaATTCTAAGCTT
AATGAAGCATGTATTGTATCTTTAAAAAGGGATTATATTGCTTTACTCGG
TCGAACATTTTTTGTCTGTAAATTATGATAAACAAATTTAGTTgactttt
attttaagaaaattttagaattaaactttgaaagatttttttgtaaattg
acGGTATCTATTTTCCCGATCATCAGTTCTTTGTTCAAGTTTCAAGTTCC
agttttgattgaaaacaacCTTCTCAGAATAAACAACGTAGAGAAACGAA
GCCTTGGCAGATTATTTTAATTGTACTGGaggtcaattttttctttagaa
atctGTTCTCTTTTAGCTACACTgataattggtaacttctttctTAGGAG
CCTTTAACTTATGTATCTTTCAAGATTTGtttgtaaaagaaaaataattg
taaAGTTGTCGatattcattttgtattttcCTTTTGAAATAATTTGGCTG
ATCATTCTAATTTctcatcaatttataacttagaaatttaaaacagaa
Run BLAST on NCBI

protein sequence of TCONS_00052673-protein

>TCONS_00052673-protein ID=TCONS_00052673-protein|Name=TCONS_00052673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MALKRITKELTDLGRDPPAQCSAGPIDEKDMFKWQATIMGPTESPYQGGV
FFLTINFPPDYPFKPPKVTFVTRIYHPNINSNGSICLDILRQQWSPALTI
SKVLLSICSLLTDPNPEDPLVPEIARIYKSDRSRYSDLAKEWTKKYAM
Run BLAST on NCBI

transcript from alignment at scaffold_218:360397..369837-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052673 ID=TCONS_00052673|Name=TCONS_00052673|organism=Clytia hemisphaerica|type=transcript|length=9441bp|location=Sequence derived from alignment at scaffold_218:360397..369837- (Clytia hemisphaerica)
CTTTAATCCTCTAAGAGCGTAAACTTTGAATTTTGGAATCTTTTTTCGGT
AATAAAAGTAGGAGTGGCAAAACCGCCGTTTTTCCGCTTTTGTTAACATA
TTCGGGCATCTGGTTTTCGGAGGCGAATAAAATCTCCTTACCAGGCCCTT
GGCGTGTAGCACAAGACAAGAAAGGCGAGAATTTTGTGAAGAGGTAAAAA
GTACCTCAAAAAATATTCATCAAGCTGTTAGAGGGGATACACAATTCTCC
CTTCTAAAACCTTAAAAATATATATACATGGCTTTAAAAAGGATAACAAA
GGTTGGTTAATATATACATTCAATTTTTGTTATGACAAATCGACTAAGGA
AAGACCAGAGTCGTTTCAACTTTTGATTTGAATATTTTTTTGTTACTGCT
CTGGGGCTCCATTCTTTGACTGTTCTGAATGTCGCTCGTCACTGATTGCT
GATTAATAAGTCTATACAAACTAGTTTAGATTTTCAGCCATTCAGGGATA
GTGACAATTTTTTTAACTAAGCCTCCTGGAAATCAGGGGCTGAACAACTT
CCCTGGGAAGTACTTTTTGAGTGACAAAGCAAAAGGTGCTGAAAACAAAA
ATCTATGCCTTTAAACTAGAGTAACCACTGGATACGTTGATAATCTAGAA
CATGTTAAAAACCCCTTGGACGGTCATGTAAATTGGGCTGTTCAAAAAAT
TGATAAAGTTTTTATGAGGAAAGCATCCCCTATAAAAGCTGACAACCTTC
AATGACAGACTTGAAAAGTCAAAGATTTATTGACCCCTCCCCCTGAAAAA
GTTGGTGAATACCCCCTGTATGGTTTTGAAAATGGAATAGCCCATCCCAT
GCAAATTTCCAGGATAACGGTGGCAGAAACTCGATCTTTGCTTGAATCAT
GAAACTTAATCCTATTTTTTGTACATGAGTCATGAGAATCATGACAAAAA
TTTGATGTCCTAGGCCCTTATTAACAGAACAAGCCCATTCTGAAGTTAAT
TCTTTGTGTTACTTACTTGTGTAGGTGTTCGAGCATAGTGCTCAGGTAAG
ATTCTTGGTGAACCACGCCTCTATTTGATTAATCTGTCGAGGGAAAAAGA
ATCGCAGTATATATTTTTCATGTCAAGTATTGAATTTAAATTAGGTCTCA
TGCACCCAGTATATCCATGAATTTGGGGTTCATCCGGGATCGACTTTAAG
TGAGTGTCAAGGGCATTTTTTAATTTTTCAGTTGAAGTGTTTGAAGTTGA
AGTTTCTTATGCTCTTTGGCATTACATTGAATAGTTTTGCACCTCGTTCA
GAAAGAGTGCAATCTCTAAGGTAGGATGTTTGATTCTTGAAGATAGACAG
TTGGCACAGCCGGCCGAGCCGGGGATTTTCGTAAGCTTTTATACTGCTAT
TCATGTTAGGTACTATCCCTTCTAACACCTTCCAAACATAGATGATGCGA
TATAGCGTTCCCTTCTTCTTTGAAGGGAATAGATTTTGGATTGCTTGAGA
CACTCCCAATACCTTACCTTGAGTTACCTTGAGCTTGTTTCGTAATATCT
TTACGCATCCATCCTGTGAGGACCGATGTAAATTTTCATATTGATGATGC
TGTTTGTTTCAGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAGACAGTTCCTCCAGAATATTGCGAGTGGCTTAGCA
AGTTCTTCTTTGCAATTTTTCAGCAAAATCGCAGGAAATCCATCAGGACC
GGGAGCAGAGTTTGGTGGAATAATTGTTTGAGATGCCTTTTATCCTTCTC
AGAAAGGATTTTTGAATGTCTTTGTGTCTCTAAATGGGCCATTCCGGAAA
ATTTTTGTTACCCCCTGTCGGACAACGTGTATTTTTTTATTTTTTTCTAG
CCTCGGAAATAATTTCTCTTTTCCAGTGGTGGTTGGAAATTCCATTAAAA
ATTCATGTACTTTTGCAAAATGCATCGGAAATTCCACTCTTTTTTGGCCT
TTTTAACTCGATTGCCTTGGAAATTCATACATTTTCTTCTCTCGCCTTGG
AAATTTCGAATTTTAATGAAAACTTTTACCCTCGGAAATCCTGTGTCGTC
CGCCCCCCTGTTACAGACAAATTCTGGAATGGCCCAATGAGACCAACAGT
ATTTGGACTCCATAGAACGGAGCAATATTCTAAAATTGGTATCACCAACG
ATTTGTAGAGTCAAACATTCAAATGACCGCGATGAAAAAGTTCGCAGCAT
CAATGAAGCTTTTTGAATGGTTGAAATTAATTGTTCTTTAAACAAGCAAT
CATTACTCATCAGGATTCCCAAATCTTTTACAACAATTTTGCTTTCAATG
ATATTGCCTGATGGTGATGTATAGTTTGTTTGGTCCTTGATAAATTGATT
TTGACCATATCTCAACAGTTCAAGTTTCATGTTATTGTCATCTGTCCATT
TGTAAATTTTCTCTAAGTCAGATTGAAGTAAGGGAACATCTTCAATTGTC
TTGACTTATTTTGATGCACGGGTGTCATCAGCAAAGGACTTCACAAAGCT
GTTTAAGATATCTTTGTCAATATTGCCAATGAGTATAAGAAAGACCAAAG
GACCCAGGACACTTCCTTGAGGGACTCCTGATAAGACCTCTTGTGGTTTT
GACTTCACACCATTTACAAGCACTGACTGGGCACTTAAGCCATTGTAGTA
TTTTTCCATCAATTCCTAGTTGCATTATCTTGTGTAGGACAATTGCATGG
TCAACTTTATCAAAGGCTATCGAGAAATCTAGGTAGACAACATCTACAAT
TGCTTCTATGTCAAGAATATTCAATATCAAGTCATATTGTTCATCAAGCA
ATTGACTTAGACATGATATACATGTCATCTTCCATCGAAAGAGCAAACCT
AGCTATATTTTCCTTTTTACTGTCATTCAGGAGAAGGGAAGAATACATTA
AGCATATATTTGGCTTGGAACCATCAATAGTGAGACCCATGCACTTAGAC
AATACAGACTTATCATGGTTTAGATCTCCGAAATTTTGTAAACATTCAAT
TCAAAAAGCATTCAGATTTTGGGAGCAGTGGAATGTCTTTTTTACTTCAA
CTTGACCACATTTCCAAACCTTTTTGAACTGAAAAAAATGGTTGATATGA
ACAGACCATTTTTCATCCCCTTTTAGTGTCCGGTTATCGAGCGCTGCCGC
TCCTGAAATCGTTAGAATTTAGGTAAATCAGCATTTTTGATAAAAGGGTA
ATTTTCGCAGTTTTGTCCTATTTTGGACACATTTCTTTCAATTTCCTTGG
GATCTTTTAAATTTTTTGATGAAAAATGGCAAAATTTATAATTTGAGTAC
ATCTGTACATCCTGTGCCCAAGTTCAGGAGTTGCCATAAAGCCATTATGG
TAATAACCGGGAGGGTACATTGCTATACATTGTAATTTTAGTATTCTAAT
TTTTCATGGTTTTGCCGAAAAACCACCAAAAAAGTTAAAAATAGTTCCCG
CAAAAATTAGTGCTTATTAAAGACATGTACTTATTCTTTGTATTCTGCAG
GAAAATATATCACGTTTGATCCCAGCCCAGGGATTTTTCTAAGCACTTTG
AGCTAGCTGTGGCCATTTTTGTAAATTTGGCTCTGTTGGGGGCTTAGAGG
GCAAAGCTCTCAAAAAATTTTGAAAATGTAGATAGTATTTTAGGCTTGTA
AACAATGAAAAAGTCAAATTTTGCTAGAAAATGTTTTTTCTACATTAAAA
GAAGAAATTTTTGCGGGAATTTAATTTAACGAATGGCTGAAAAAAATTTT
TCAGAGGGAATTTAATTTGGCAGATGATGGATACTGACGGAACTTAATTC
CGCACATTTTGGCCAAATCCGCCAATTGTCTCCTTCTTTTTACATCAACT
TGTATGAATTGTGTTTTGTATTATCAGGGGGTTTTTGCCATGCATAACTT
TTGATCTAGATCAGCAACTTTTTGTACCAAATTTGGAACAGTTGTTTCTT
CCATGATATACTCATAAAATCCTTTCAACTTGATGATGTCATCATGAAAA
TGACATTGGCAGCCAACCTATAGAAGACCTCAGAAAGGCGTCAATTAAAA
AGCAACTAGAAAAGATTTGTTAATTCTGTTTTGATTTTCTAAAAGTTAAT
AGAAAACTCAATAATATATTTGCTGGTTTATCAATTTTGAATTTTGAAAT
CTATGCTGAAGATGAGTAAAATCAATTTAAAGGGACATAAAAGTAGTAAA
ATTTAAACATTGCGCAAGCCACGTGTCATTAAAGAGAACAATTAAAATCA
CGTGTCCAAAACAAACTTGTAAAACAATGGAACAATCAAAATTAGCCATA
TTTGTTTTGATTTTGTATCTGCTGCATACAGTTTGTTTACAAATTTCACA
AGTACTGTTATGTCCCTTTAAATGATATGTCATCATTTTTTGCAAATTTT
TTTAGTTAGTATCTAAGACCGTTTTATTTAACACAATTTGGGTTTATGGC
CAATGTTGGTAATAAAGTCATAAAATATGACCCGGCTGTTTTTTTTTTAC
TTAAACTTTGGTTGGCTTACACATTATAAATTTTGTTAATATCCTATTCT
AATAGAATTTCAGGGAGTTTTAAGCAAAAGTGCCAGGGAACATGTAAAAT
ACCTCCTCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCC
CCCCCTTCCTGTTAAAAATAGGGTTTAAACTTTGAAATGAAAGGTATTTG
GCAGAAAAAAAATCAGATATTGCATTAATAAGATTATAGAAATATTGATA
AAAATCCACCCCTGGATATCTTTTCAGAAAGCACAAGATCGATATGTAGT
TCAAACTCTATCTAAGATGGAGACTTATGTCTATGCTGAAAATTATATTT
AGACAGACTTCGTGTTACAAGTGATATGACTGGCCCCTACATAAAATATG
TAAAGGGAATGAGAAAGTGAGAAAGGAAAATTAAACTTTTCAGTTTTTTG
AAATAAATGATAGCATATTGATCATCAGCTAGACAGGTTTCAAGTTTGAA
CTGTCTTTCTTTTTTAGGAATTGACAGATTTAGGGAGGGATCCACCAGCA
CAATGTTCAGCTGGACCTATAGATGAAAAAGATAGTAAGTATTCATCACA
GGAAAAAATCCTTGAATCACATGCGTGTGAAAAACAATTTCCGAGCATGT
GATCCTGCAAAAAATCACATGCGTGTGAAAATACAATTCACAAGCCATCG
TTTCTCGACTTATTAAATGGGGTGTGACTAGATTTAAAATCACAAATAGG
ATTGTTTGTCTTTCTTAGAGAGAAAGGTTTAATACCCTGAAAGTAACTCA
CTTCTATTCTATTTAACAAGTGAGAAAAGATGGATTGTGAATTACATTTT
CACACGCATGTGATTTTTTGCAGGATCACATGCTCGGAAATTGTTTTTCA
CACGCATGTGATTCAAGGATTTTTTCCTGTGCATATGGTTTGTAATCTCA
GTGGTTTATGATATTGACACTAATTTTTTACAAAAGTCTCAAAAGCTAAG
TTAACTATGATGTTTCTTTCCAGGCCCCTCAATCCTCAATGTAATTATTA
CATGGCTTCCATCTGGAAGTTGGAGGCTGATAATTGTTGCTCATACCAAG
GGCATAAAACCTTCAAGAAAACTACACACAATTCTTAATAATCTTTGTTT
TCAATGTTTAACAGCTCTGATCTAGTATCAAGCACCTGCGACATAGTGTA
GCTATCTTCAAAAAAAAAGTCTGTAATTCTGTGTAATTATGCAAACTAAA
AATCGCTTGATAACAAACAAATTGCAAGAGTTTGCAACAAAATCAGTTAG
AACTGAGTTTTTTTAGGCACTTGCAAATTTGTCTGCAATTTTTTAATAAC
ATTACAGAAAGACTTTACTTGCGACATGTGTGCAATTTCCCATATGCTTG
CAACGAAATGTAATTGCAGCTGTATGCAAAACCTTTGTTGCCTCTGCTTT
AGGCTATACAAGACTAGCAGGCAGGAATTTTGTAAATTTTTGTGAGTTAT
TAACATTTAGCATTTTGTGTTCATTTTCCTTTCAGTGTTTAAATGGCAAG
CTACTATAATGGGACCAGTAAGTGTTAAGCTCTTATATAAGTTCATTTTA
TTTTTATTTTAATGGTCTGTTTCAAGATAGTTGAAATTTAAATTTTTTAA
ACTGTAATTTAAAATTAATTATTGGATTTTATATTAGGATTGCATTATGA
CTAGCAAAATATTCCTTTTTTCAGACGGAAAGTCCATATCAAGGTGGCGT
ATTTTTTCTTACAATCAACTTTCCACCAGATTATCCTTTCAAACCACCAA
AAGTAAGTGATCAATTTTTTTTTTCACTTTGGTCTTCAACATGCATTGAT
TGATATATTAAATGGAAATGCAGATTGATTACCATAGTTTTTCTTTAAGT
TTTAAAGATTTCCATGCCTAAACCTTTTGATGTTTTTAGCGCTTAACCAT
TTGCTTAATCTCTCACCTGACTTAATAATCTCTGTGAATGCTAATTGTAG
AATTTACAGGATTTATTTTGGTTTTGTTAAGAACAGACACGTCTTGTGAC
AGTTTTGCACTGTCGTTAAAGCAAACAAAATTCAATATCTATTTTGTACT
TTAGGTCACATTTGTTACAAGAATATACCACCCCAATATTAATAGCAATG
GAAGTATCTGTTTGGATATTCTAAGACAACAATGGAGTCCTGCTCTAACA
ATATCAAAAGGTATTTATGACTTTTATCATTTTGGATTCTCAGAAAAACT
TGTTAAACTTTGATAAATTCATTGTAAACTTTTGCTTTGTTAGCATGATT
AAACATATGCGTGAATAGAACGCCTTTATAAGAACGCGAGGCTCAATTTT
GGCAAAAACCTAATAAGAATTAAGAACAATTTAAGCCCCATATGTCTGAA
ATGGCTAAATAAACCCAAGTCGATAAGTTGATACTACAAGCACGTTAAGA
ACAATTGAGCTTGGGGATCACAAGACAATTAGAAATAGCAGATCCTGATG
ACAAATTACCTGGTTCTTATAAAAAGTGTGTATTAACTCTGTGCTTGAAT
CATTTTATTCTCTAGATAATCCTAGCGGATACAAATACTTACCTATTATA
TAATTGAAATACAGCTACCGTTTTAATTAATTGCTTCATGAGCATTCTAG
ACCATTCTGGATCAGACAATGACCTTTGTTTTACTTTTTTTATTTTAAAA
TATGCTTAAAGCACGCAGGATCACGTTATTCTTTATCATGATGTTTGGTA
TTAAACAACTCATCTGCGTATCAGATATTTGTAGGGAGCTTAGTTTTTGC
TCAAAATGGCAATACTTTTCACATCACACCGCGCTTCATTATAAGACCTT
TTCACCATTCTTTTTTCTAATTTTTAGTACTATTATCTATATGTTCACTA
CTGACGGACCCTAATCCTGAAGATCCATTGGTACCAGAAATAGCAAGAAT
CTATAAAAGTGATCGTTCTCGATACAGTGACCTTGCAAAAGAGTGGACCA
AGAAGTATGCCATGTGATCGGTCATCTAACTAGTAGCCTTCGTTTAACGA
CGATTTAAGGTTCTGGAAAGGAGGAAAAGTGTAGAATCTAACAGCTAATG
AAGTCTTCGCATTGTTTTTTTATTTCGAAGCAATTCTAAGCTTAATGAAG
CATGTATTGTATCTTTAAAAAGGGATTATATTGCTTTACTCGGTCGAACA
TTTTTTGTCTGTAAATTATGATAAACAAATTTAGTTGACTTTTATTTTAA
GAAAATTTTAGAATTAAACTTTGAAAGATTTTTTTGTAAATTGACGGTAT
CTATTTTCCCGATCATCAGTTCTTTGTTCAAGTTTCAAGTTCCAGTTTTG
ATTGAAAACAACCTTCTCAGAATAAACAACGTAGAGAAACGAAGCCTTGG
CAGATTATTTTAATTGTACTGGAGGTCAATTTTTTCTTTAGAAATCTGTT
CTCTTTTAGCTACACTGATAATTGGTAACTTCTTTCTTAGGAGCCTTTAA
CTTATGTATCTTTCAAGATTTGTTTGTAAAAGAAAAATAATTGTAAAGTT
GTCGATATTCATTTTGTATTTTCCTTTTGAAATAATTTGGCTGATCATTC
TAATTTCTCATCAATTTATAACTTAGAAATTTAAAACAGAA

Coding sequence (CDS) from alignment at scaffold_218:360397..369837-

>TCONS_00052673 ID=TCONS_00052673|Name=TCONS_00052673|organism=Clytia hemisphaerica|type=CDS|length=2682bp|location=Sequence derived from alignment at scaffold_218:360397..369837- (Clytia hemisphaerica)
TACTATTATCTATATGTTCACTACTGACGGACCCTAATCCTGAAGATCCA
TTGGTACCAGAAATAGCAAGAATCTATAAAAGTGATCGTTCTCGATACAG
TGACCTTGCAAAAGAGTGGACCAAGAAGTATGCCATGTGAGTCACATTTG
TTACAAGAATATACCACCCCAATATTAATAGCAATGGAAGTATCTGTTTG
GATATTCTAAGACAACAATGGAGTCCTGCTCTAACAATATCAAAAGACGG
AAAGTCCATATCAAGGTGGCGTATTTTTTCTTACAATCAACTTTCCACCA
GATTATCCTTTCAAACCACCAAAATGTTTAAATGGCAAGCTACTATAATG
GGACCAGAATTGACAGATTTAGGGAGGGATCCACCAGCACAATGTTCAGC
TGGACCTATAGATGAAAAAGATAATGGCTTTAAAAAGGATAACAAAGTAC
TATTATCTATATGTTCACTACTGACGGACCCTAATCCTGAAGATCCATTG
GTACCAGAAATAGCAAGAATCTATAAAAGTGATCGTTCTCGATACAGTGA
CCTTGCAAAAGAGTGGACCAAGAAGTATGCCATGTGAGTCACATTTGTTA
CAAGAATATACCACCCCAATATTAATAGCAATGGAAGTATCTGTTTGGAT
ATTCTAAGACAACAATGGAGTCCTGCTCTAACAATATCAAAAGACGGAAA
GTCCATATCAAGGTGGCGTATTTTTTCTTACAATCAACTTTCCACCAGAT
TATCCTTTCAAACCACCAAAATGTTTAAATGGCAAGCTACTATAATGGGA
CCAGAATTGACAGATTTAGGGAGGGATCCACCAGCACAATGTTCAGCTGG
ACCTATAGATGAAAAAGATAATGGCTTTAAAAAGGATAACAAAGTACTAT
TATCTATATGTTCACTACTGACGGACCCTAATCCTGAAGATCCATTGGTA
CCAGAAATAGCAAGAATCTATAAAAGTGATCGTTCTCGATACAGTGACCT
TGCAAAAGAGTGGACCAAGAAGTATGCCATGTGAGTCACATTTGTTACAA
GAATATACCACCCCAATATTAATAGCAATGGAAGTATCTGTTTGGATATT
CTAAGACAACAATGGAGTCCTGCTCTAACAATATCAAAAGACGGAAAGTC
CATATCAAGGTGGCGTATTTTTTCTTACAATCAACTTTCCACCAGATTAT
CCTTTCAAACCACCAAAATGTTTAAATGGCAAGCTACTATAATGGGACCA
GAATTGACAGATTTAGGGAGGGATCCACCAGCACAATGTTCAGCTGGACC
TATAGATGAAAAAGATAATGGCTTTAAAAAGGATAACAAAGTACTATTAT
CTATATGTTCACTACTGACGGACCCTAATCCTGAAGATCCATTGGTACCA
GAAATAGCAAGAATCTATAAAAGTGATCGTTCTCGATACAGTGACCTTGC
AAAAGAGTGGACCAAGAAGTATGCCATGTGAGTCACATTTGTTACAAGAA
TATACCACCCCAATATTAATAGCAATGGAAGTATCTGTTTGGATATTCTA
AGACAACAATGGAGTCCTGCTCTAACAATATCAAAAGACGGAAAGTCCAT
ATCAAGGTGGCGTATTTTTTCTTACAATCAACTTTCCACCAGATTATCCT
TTCAAACCACCAAAATGTTTAAATGGCAAGCTACTATAATGGGACCAGAA
TTGACAGATTTAGGGAGGGATCCACCAGCACAATGTTCAGCTGGACCTAT
AGATGAAAAAGATAATGGCTTTAAAAAGGATAACAAAGTACTATTATCTA
TATGTTCACTACTGACGGACCCTAATCCTGAAGATCCATTGGTACCAGAA
ATAGCAAGAATCTATAAAAGTGATCGTTCTCGATACAGTGACCTTGCAAA
AGAGTGGACCAAGAAGTATGCCATGTGAGTCACATTTGTTACAAGAATAT
ACCACCCCAATATTAATAGCAATGGAAGTATCTGTTTGGATATTCTAAGA
CAACAATGGAGTCCTGCTCTAACAATATCAAAAGACGGAAAGTCCATATC
AAGGTGGCGTATTTTTTCTTACAATCAACTTTCCACCAGATTATCCTTTC
AAACCACCAAAATGTTTAAATGGCAAGCTACTATAATGGGACCAGAATTG
ACAGATTTAGGGAGGGATCCACCAGCACAATGTTCAGCTGGACCTATAGA
TGAAAAAGATAATGGCTTTAAAAAGGATAACAAAGTACTATTATCTATAT
GTTCACTACTGACGGACCCTAATCCTGAAGATCCATTGGTACCAGAAATA
GCAAGAATCTATAAAAGTGATCGTTCTCGATACAGTGACCTTGCAAAAGA
GTGGACCAAGAAGTATGCCATGTGAGTCACATTTGTTACAAGAATATACC
ACCCCAATATTAATAGCAATGGAAGTATCTGTTTGGATATTCTAAGACAA
CAATGGAGTCCTGCTCTAACAATATCAAAAGACGGAAAGTCCATATCAAG
GTGGCGTATTTTTTCTTACAATCAACTTTCCACCAGATTATCCTTTCAAA
CCACCAAAATGTTTAAATGGCAAGCTACTATAATGGGACCAGAATTGACA
GATTTAGGGAGGGATCCACCAGCACAATGTTCAGCTGGACCTATAGATGA
AAAAGATAATGGCTTTAAAAAGGATAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033278XLOC_033278Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052673-proteinTCONS_00052673-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052673-exon-scaffold_218-1575043694:369537..369837TCONS_00052673-exon-scaffold_218-1575043694:369537..369837Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1575043694:363454..363520TCONS_00052673-exon-scaffold_218-1575043694:363454..363520Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1575043694:362471..362502TCONS_00052673-exon-scaffold_218-1575043694:362471..362502Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1575043694:362236..362313TCONS_00052673-exon-scaffold_218-1575043694:362236..362313Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1575043694:361828..361933TCONS_00052673-exon-scaffold_218-1575043694:361828..361933Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1575043694:360397..361160TCONS_00052673-exon-scaffold_218-1575043694:360397..361160Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1510915933:369537..369837TCONS_00052673-exon-scaffold_218-1510915933:369537..369837Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1510915933:363454..363520TCONS_00052673-exon-scaffold_218-1510915933:363454..363520Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1510915933:362471..362502TCONS_00052673-exon-scaffold_218-1510915933:362471..362502Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1510915933:362236..362313TCONS_00052673-exon-scaffold_218-1510915933:362236..362313Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1510915933:361828..361933TCONS_00052673-exon-scaffold_218-1510915933:361828..361933Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1510915933:360397..361160TCONS_00052673-exon-scaffold_218-1510915933:360397..361160Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1491911889:369537..369837TCONS_00052673-exon-scaffold_218-1491911889:369537..369837Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1491911889:363454..363520TCONS_00052673-exon-scaffold_218-1491911889:363454..363520Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1491911889:362471..362502TCONS_00052673-exon-scaffold_218-1491911889:362471..362502Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1491911889:362236..362313TCONS_00052673-exon-scaffold_218-1491911889:362236..362313Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1491911889:361828..361933TCONS_00052673-exon-scaffold_218-1491911889:361828..361933Clytia hemisphaericaexon
TCONS_00052673-exon-scaffold_218-1491911889:360397..361160TCONS_00052673-exon-scaffold_218-1491911889:360397..361160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:360397..369837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
706.876	697.881	940.832	980.356	143.405	110.964	264.663	275.592	365.135	313.581	362.214	391.303	468.609	490.742	405.686	421.184	384.507	439.596	215.984	240.564	532.839	489.995	567.6	525.577	368.803	427.193	401.092	389.13	418.356	409.965
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
IPR023313UBQ-conjugating_AS
Blast
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BLAST of TCONS_00052673 vs. Swiss-Prot (Human)
Match: UB2D2 (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.588e-85
Identity = 123/148 (83.11%), Postives = 134/148 (90.54%), Query Frame = 2 
Query:  278 MALKRITKELTDLGRDPPAQCSAGPIDEKDMFKWQATIMGPTESPYQGGVFFLTINFPPDYPFKPPKVTFVTRIYHPNINSNGSICLDILRQQWSPALTISKVLLSICSLLTDPNPEDPLVPEIARIYKSDRSRYSDLAKEWTKKYAM 721
            MALKRI KEL DL RDPPAQCSAGP+ + DMF WQATIMGP +SPYQGGVFFLTI+FP DYPFKPPKV F TRIYHPNINSNGSICLDILR QWSPALTISKVLLSICSLL DPNP+DPLVPEIARIYK+DR +Y+ +A+EWT+KYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
The following BLAST results are available for this feature:
BLAST of TCONS_00052673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2D24.588e-8583.11Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
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