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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052586 ID=TCONS_00052586|Name=TCONS_00052586|organism=Clytia hemisphaerica|type=transcript|length=1835bp
TTTCTCATTGATCCGATTGGTAGTGCTGGGCAAAGTATAATTTGTAACAG
AGCTAAGGTggaaatatatctttttttgcaaatatgAATGAGCTTGTGCA
AATTTACGAAACTTggtaaaacgttttttttacaaagaatcTTGGTCTTT
CTATGATGCATGAATGGATATCAACCTCTTGACAATCAACTTCATCTTGA
TACTGACAACACTTTCAATCACCACACAAACCGTTCAAGCTGGTGAACAA
AAAGGACCTGGCGTACGACACATTTGCGGCAAAGACTTCATCAGAACCTG
GCAAATCCTCTGCAAAATCAAACAACTTAAACGTAACCGTGGTAGGAAAA
GACGTTCTCTTCTTGACGATGGCGTTGTTAAAATCAAATCAGCACACGAC
TTATTGGACAGCAGAACTGCTAGATCATTTTTAAAAGCTTCCTTATCGGT
AAGGAGTAAACGTTCGATTTACAGTCGAGTGAACACATTAAATGCTTCCG
AGGAATGTTGCATGGAAGGATGTCGTCTTTCCGAAATCAATGAATACGAT
TGCTAAAACATCATGTTTCAGTTGACAGGACTGTATTCATTCAAACTTTA
ACGGTTCTAGTATGATCAAAAGAGTCCAGAAAACTCAAAAGCTGGAACAG
GTCTTTTGAAATGGAAATCATGCCATATGATAGGAGGAAATAAGCCTTCG
ATTGGCTTTCCGAGATAAACGATTGATTACAATTAATTAAGTTATTGGAC
CATAGGTTATCATGATGAAAACTCGATACCTATATTTAAATACGTTATCC
AAACCTTTAGTGTAATATCTGACAATATACAGTTTAGTTATAGGTATGCT
TTTAGATAATTTTTCGGGTTATCGGGGTACAAATATATTCCAAAAGTACC
AAATTTGAAATCCGAAATCTAATTTTAACGTATTTAAAACAATTATTTTA
AGTATATATGACAATAAAATGtggaatttgttttttaaaacttcgttttt
aatttatttacatTAAATAGGATTGAGGTTAGTTTTATACAAAGGTGGAT
GCAAGGAGCCCTTGTTATAagccttttcataaatcattCCGAGTAACGAt
tacctcgttttgaaaccattaccaaggtgattaaatcccttgAGTTTTTC
AAATATTGCTTTTATAAATAGGCTAAACTCCAATGGGAATCATTCCCAAT
TGCAATATTTTGAGAACGAGGCAATCGTTGCCCGTGATATAATTTGTGAA
AAGGTCTCTTCGcaagatttttatcaaaaccTATTACCATTAGTGTTTTA
AGCCCTCTAATTGAATCGAAATTTCTTTATAGTCATGTCGCACTTAAAAC
CATTAACCTGCCCCCTACTAAACTGTTTAACTGTGCAAAGTATCGTTTAA
CTTTGGCAAACTGCCAAGAAAAAGATTCCTTGATGCAATGTTTATGCGAA
TATTCAATATAACCTGCTATcaacttttccaattttttttcttgcattca
cttttgttttaatattttccccgaagttttttaactttttaatctTCAAT
ATTTGAAGGAATTTTAGTAACCATGATTACAATTTGTGTCATGGGCCCAA
TTATTATGTATAGTCCCCATTTAATCACATTTATCcatttaaatttctta
taaccagttatttctcaatttattattttaaagtGTATTAGACTATTAGA
CTTTAGGCAGCCAATGAAATGCCTGATGACCCATGCAGTatgtattttta
gattttacaaTAGGATGCTTTAAGTATATTCGGTATGCAGAATAAAGTAA
CATAATACAACAACATTTGAATTCTTCAATTCTCA Run BLAST on NCBI transcript from alignment at scaffold_218:431996..434873+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052586 ID=TCONS_00052586|Name=TCONS_00052586|organism=Clytia hemisphaerica|type=transcript|length=2878bp|location=Sequence derived from alignment at scaffold_218:431996..434873+ (Clytia hemisphaerica)
TTTCTCATTGATCCGATTGGTAGTGCTGGGCAAAGTATAATTTGTAACAG
AGCTAAGGTggaaatatatctttttttgcaaatatgAATGAGCTTGTGCA
AATTTACGAAACTTggtaaaacgttttttttacaaagaatcTTGGTCTTT
CTATGATGCATGAGTAAGTCCTTTCGCctcattttatattttgttcATTG
TCTTATCTAAGGTTAAACATTGTGCTAGGCGTTGCCCTAAAGCTTTTCTC
GTATAATCATTTATTTTTCAGTACGCAGTAGTTTTTTTCAAACCTTTGGA
TTGCAATAATCAAAGTCGTAAAAATTGGTCATAATTCTAAATCATCAATC
TAATGAGCTCTTACGCTCTAACCATCCAAATActctaaaaactttttcaa
tcaaatccATTCTTAAAGTGTACTATGACGAGCGCGAACTTTTATTATAA
GTTAAAAAGTTACCGAAATCGGAAGCTTTTAGTATTGATTTATGTAGAAT
ACAATCTCAACTCTTTCAAGGGCATATCACGAAAGTTTGTAATATATATT
GATATGTAACTACTACAGACGAGTGTCTAACACTCGGACATAACTCATAA
CTCAAAAGACAGATTGCCACGGGAGAGTGGTTTTAATGTATTCAACGAAT
ATATTGAGCATTTGCAAGAATAAGCATCAGCGAAAAGCGGATACATGGTT
TGCTAATCTATTTTTAACGCTCCTTCCTTCTAATTCTTCTAATTCGATAA
AATTTGTCCCCTCGATATATCCAGAAACTTAAAATTCACCAATGGTTATT
TTCCCTCTACCATTACAGATGGATATCAACCTCTTGACAATCAACTTCAT
CTTGATACTGACAACACTTTCAATCACCACACAAACCGTTCAAGCTGGTG
AACAAAAAGGACCTGGCGTACGACACATTTGCGGCAAAGACTTCATCAGA
ACCTGGCAAATCCTCTGCAAAATCAAACAACTTAAACGTAACCGTGGTAG
GAAAAGACGTTCTCTTCTTGACGGTAAGTGCTTGATTTATACTTTATTCT
AAACacgtcttttttctttattacttTGAATTTGTGTAGTTTACGTAGCT
AAGCTAAATacaagaaatcaaaatttctgtCCGGAAAACTCTGGCTCTCA
GGGTTAAAACTCTTACTTTGATCCAGGGCTACAAAACGGTCTTTCTATGC
CAATTTTGTTGTTTGAGTCTATTGCNAAAACTCTGGCTCTCAGGGTTAAA
ACTCTTACTTTGATCCAGGGCTACAAAACGGTCTTTCTATGCCAATTTTG
TTGTTTGAGTCTATTGCTCCTAAATTCATCTTTAAGTTCCGACCAAAAAC
TTTTCCTGTGGGAGACAAGCGTGTACGTTTCTTCTTTTGACCACGTGATT
TATCCTTTCAGATGGCGTTGTTAAAATCAAATCAGCACACGACTTATTGG
ACAGCAGAACTGCTAGATCATTTTTAAAAGCTTCCTTATCGGTAAGGAGT
AAACGTTCGATTTACAGTCGAGTGAACACATTAAATGCTTCCGAGGAATG
TTGCATGGAAGGATGTCGTCTTTCCGAAATCAATGAATACGATTGCTAAA
ACATCATGTTTCAGTTGACAGGACTGTATTCATTCAAACTTTAACGGTTC
TAGTATGATCAAAAGAGTCCAGAAAACTCAAAAGCTGGAACAGGTCTTTT
GAAATGGAAATCATGCCATATGATAGGAGGAAATAAGCCTTCGATTGGCT
TTCCGAGATAAACGATTGATTACAATTAATTAAGTTATTGGACCATAGGT
TATCATGATGAAAACTCGATACCTATATTTAAATACGTTATCCAAACCTT
TAGTGTAATATCTGACAATATACAGTTTAGTTATAGGTATGCTTTTAGAT
AATTTTTCGGGTTATCGGGGTACAAATATATTCCAAAAGTACCAAATTTG
AAATCCGAAATCTAATTTTAACGTATTTAAAACAATTATTTTAAGTATAT
ATGACAATAAAATGtggaatttgttttttaaaacttcgtttttaatttat
ttacatTAAATAGGATTGAGGTTAGTTTTATACAAAGGTGGATGCAAGGA
GCCCTTGTTATAagccttttcataaatcattCCGAGTAACGAttacctcg
ttttgaaaccattaccaaggtgattaaatcccttgAGTTTTTCAAATATT
GCTTTTATAAATAGGCTAAACTCCAATGGGAATCATTCCCAATTGCAATA
TTTTGAGAACGAGGCAATCGTTGCCCGTGATATAATTTGTGAAAAGGTCT
CTTCGcaagatttttatcaaaaccTATTACCATTAGTGTTTTAAGCCCTC
TAATTGAATCGAAATTTCTTTATAGTCATGTCGCACTTAAAACCATTAAC
CTGCCCCCTACTAAACTGTTTAACTGTGCAAAGTATCGTTTAACTTTGGC
AAACTGCCAAGAAAAAGATTCCTTGATGCAATGTTTATGCGAATATTCAA
TATAACCTGCTATcaacttttccaattttttttcttgcattcacttttgt
tttaatattttccccgaagttttttaactttttaatctTCAATATTTGAA
GGAATTTTAGTAACCATGATTACAATTTGTGTCATGGGCCCAATTATTAT
GTATAGTCCCCATTTAATCACATTTATCcatttaaatttcttataaccag
ttatttctcaatttattattttaaagtGTATTAGACTATTAGACTTTAGG
CAGCCAATGAAATGCCTGATGACCCATGCAGTatgtatttttagatttta
caaTAGGATGCTTTAAGTATATTCGGTATGCAGAATAAAGTAACATAATA
CAACAACATTTGAATTCTTCAATTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052586-exon-scaffold_218-1491911889:431996..432158 | TCONS_00052586-exon-scaffold_218-1491911889:431996..432158 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1510915933:431996..432158 | TCONS_00052586-exon-scaffold_218-1510915933:431996..432158 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1575043694:431996..432158 | TCONS_00052586-exon-scaffold_218-1575043694:431996..432158 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1491911889:432814..433018 | TCONS_00052586-exon-scaffold_218-1491911889:432814..433018 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1510915933:432814..433018 | TCONS_00052586-exon-scaffold_218-1510915933:432814..433018 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1575043694:432814..433018 | TCONS_00052586-exon-scaffold_218-1575043694:432814..433018 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1491911889:433407..434873 | TCONS_00052586-exon-scaffold_218-1491911889:433407..434873 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1510915933:433407..434873 | TCONS_00052586-exon-scaffold_218-1510915933:433407..434873 | Clytia hemisphaerica | exon |
| TCONS_00052586-exon-scaffold_218-1575043694:433407..434873 | TCONS_00052586-exon-scaffold_218-1575043694:433407..434873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:431996..434873 + |
Blast
The following BLAST results are available for this feature:
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