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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052588 ID=TCONS_00052588|Name=TCONS_00052588|organism=Clytia hemisphaerica|type=transcript|length=492bp
GCTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTT
AGCAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGA
GAGTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaatt
atttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAga
tgattttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATCGCGT
TTACTCTTTCAACTTCCATTTCATCTTTGGGAACTAACAAATGGGATGGC
AAAACCATGGAAAGTGTGACCTTGAATGATGGAACTACGCTCAGTTTTGA
TGGTAAGTTTGAttcgaaattttgttttgatatacggcaaattttataaa
ttttcgaCTATACAATCAAAAGCTCGCGAGTACCCAAAACGAAACATCCT
TATTTTCTATTCTGGTAAAAACCTTGGAACATATGATAATAT Run BLAST on NCBI protein sequence of TCONS_00052588-protein >TCONS_00052588-protein ID=TCONS_00052588-protein|Name=TCONS_00052588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
ASTSIERAFQKYVDGTLAIKTHVESSKDAEDLLRVQFQYNEKEGSKQTKI
ISQKLTDFSFDVSQSLDDFNKNEELWQNYFRIAFTLSTSISSLGTNKWDG
KTMESVTLNDGTTLSFDGKFDSKFCFDIRQIL Run BLAST on NCBI transcript from alignment at scaffold_218:488840..491597+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052588 ID=TCONS_00052588|Name=TCONS_00052588|organism=Clytia hemisphaerica|type=transcript|length=2758bp|location=Sequence derived from alignment at scaffold_218:488840..491597+ (Clytia hemisphaerica)
GCTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTT
AGCAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGA
GAGTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaatt
atttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAga
tgattttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGTATAATC
TTTCTGttgaaattttcgattttcaatgATCTTTATTATTGCAAAAAGCT
CAATAAGAGGATATAAgtcatattttccaaaattaggtGCCCGCTAATCC
TTTAACCAAATATATTCCAGACTAAAAATATACATCATTTTTTTCCTTCA
GGATCGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACGTAAGTC
AATACAGTTGATGCCCTCTGATTCGGCATTCtgttattcgataagctccc
attATCAATCAACTAACAGTCATTTGACAAATTTCCTTTTAATTTCTCAT
AAAAGATTTTTATCGGGCATTCTATCGCTATCATCTCCCTGGGGTTGTGG
TATTTTAAGATTCatgatttacgatgcacgattcacGATCCATGTTCCAT
GCATAAATTATGCTGATTTATGCGTAATCATGCTAACCATGATATTTTGG
CAATTTACAAAGTTTCATTCGCAGAAACCAACGACAAACTCAATTAgttt
tacttacttactttaggCATCCACTTGGGGTGACATGAATTAGTTTTAAT
TAGTTTTATAATTAGTTTTAAAAGCATGATTCATGttagattatacaaat
tatattcaACGAAGCTTTCATCGCATTCTCCCGTCTGTACCATGATCctt
aaaagaaaagtaaagcaCGTGCAGACACTTTCTGCGCTCTCTTTGTTCAT
AtctgttgtttacttcgtacattagaGTCCGCAAACCATGTTGCTGAATA
TTGCTCATCAGTATGTTGTGTAGTCTACGTAAAAGCCTTGATTAGTTGTA
GCTTTATTGCTTACTTATTAGTTTTTACATAAATTTGCCGTCGTAAACAA
AAACGAGAAAATATTACGCCATTGTTTTGGAAAATGttacataatttaag
ttttatgtaAATACTTCATGCATGGATCGCGAATCGtacatcgtaaatcg
ttaggtCGTCCATCTCAAATTGCACCAACCCGTCTCCCTGGAAGAGTTTT
GATTTCTAGCATATGAAAGGGTTTTTGGAATAGATTGTGAATTTTAGACG
ATCCTATCATCAACACAATGTCACAACAAAaggaataccttatcggccct
ttttacgccgccCCTTATTACGCCATAGCCTAATGTTGGGCTTACGCCAT
ttagggccgttaataacgccaaaatttataaaaatggctacttatgcCTC
GAATTAAtaaataatgactaaaatttacatttaaatgtcattttcagtag
taaactgttgaaaatttcatcgaaaattactgatttttaaatataatatt
tcactgaagttttaaatatggagtaaaacaatggataattttcatcTTCG
AATCAcacctaaaatcttttaaattgagaaataataataaaaaattaacg
ccgtttttaggtaaaaaattcaaaatcttggcccttttacgccggccctt
ttaacaccggtcgttattacgccacgagaccaaaaataacgccaataagg
gccggtgtaaaaagggccgataacgTAATTCGGGAGGCAGATGAATTTGA
AAACGGAGTTTAGTTCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTTCGCA
ATGGAATGTAATATTCCAATCttcataatttttgtttttgctgttCTGAA
AGGTAAAGCTTCTATGGATGATATATATTAATAATTACTCCTGTATATAG
TAACAAATGGGATGGCAAAACCATGGAAAGTGTGACCTTGAATGATGGAA
CTACGCTCAGTTTTGATGGTAAGTTTGAttcgaaattttgttttgatata
cggcaaattttataaattttcgaCTATACAATCAAAAGCTCGCGAGTACC
CAAAACGAAACATCCTTATTTTCTATTCTGGTAAAAACCTTGGAACATAT
GATAATAT Coding sequence (CDS) from alignment at scaffold_218:488840..491597+ >TCONS_00052588 ID=TCONS_00052588|Name=TCONS_00052588|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_218:488840..491597+ (Clytia hemisphaerica)
GCTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTT
AGCAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGA
GAGTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaatt
atttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAga
tgattttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATCGCGT
TTACTCTTTCAACTTCCATTTCATCTTTGGGAACTAACAAATGGGATGGC
AAAACCATGGAAAGTGTGACCTTGAATGATGGAACTACGCTCAGTTTTGA
TGGTAAGTTTGAttcgaaattttgttttgatatacggcaaattttataaG
CTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTTA
GCAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAG
AGTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaatta
tttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAgat
gattttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATCGCGTT
TACTCTTTCAACTTCCATTTCATCTTTGGGAACTAACAAATGGGATGGCA
AAACCATGGAAAGTGTGACCTTGAATGATGGAACTACGCTCAGTTTTGAT
GGTAAGTTTGAttcgaaattttgttttgatatacggcaaattttataaGC
TTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTTAG
CAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAGA
GTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaattat
ttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAgatg
attttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATCGCGTTT
ACTCTTTCAACTTCCATTTCATCTTTGGGAACTAACAAATGGGATGGCAA
AACCATGGAAAGTGTGACCTTGAATGATGGAACTACGCTCAGTTTTGATG
GTAAGTTTGAttcgaaattttgttttgatatacggcaaattttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052588-exon-scaffold_218-1491911889:488840..489081 | TCONS_00052588-exon-scaffold_218-1491911889:488840..489081 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1510915933:488840..489081 | TCONS_00052588-exon-scaffold_218-1510915933:488840..489081 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1575043694:488840..489081 | TCONS_00052588-exon-scaffold_218-1575043694:488840..489081 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1491911889:489241..489282 | TCONS_00052588-exon-scaffold_218-1491911889:489241..489282 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1510915933:489241..489282 | TCONS_00052588-exon-scaffold_218-1510915933:489241..489282 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1575043694:489241..489282 | TCONS_00052588-exon-scaffold_218-1575043694:489241..489282 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1491911889:491390..491597 | TCONS_00052588-exon-scaffold_218-1491911889:491390..491597 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1510915933:491390..491597 | TCONS_00052588-exon-scaffold_218-1510915933:491390..491597 | Clytia hemisphaerica | exon |
| TCONS_00052588-exon-scaffold_218-1575043694:491390..491597 | TCONS_00052588-exon-scaffold_218-1575043694:491390..491597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:488840..491597 + |
Blast
The following BLAST results are available for this feature:
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