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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052590 ID=TCONS_00052590|Name=TCONS_00052590|organism=Clytia hemisphaerica|type=transcript|length=1828bp
AAATGATGGTCATCATCATGTTTTTCGAGtaaattgtttaaaatctgTTC
GATAAAAAATTGAAGTCTCTGAATGTCTCCgtttgttttgaataaattta
tcagTAATACTTGATGTTCTTTGAATTCCATTAAGAGTGCACTATCTTGA
TCACTATTGCAAATATGATGGAAATGCTGATACCAGAAATATCCATCCAT
CTTCAGGTTATTTCTTTCACATATCTTAAGATCTCCAATGAAAACTGCTG
CAAGCCTTTGTATTATTTCTTCACGTTTATCAATTTGGTGAATTTTCAAG
AATGCTTGTGTTAAGGAATGACACGTTAGTTGCTGTTCAGCATACGAAGT
GTTGCTATTTGACAATGAGATATTAAtgattgaatattttgataaaaaat
gaagtaTGTCATTCAACGCTGATAAGTCGTCGTTGACAGATTTGAGTAAG
AGACCTTTCTTGATATCTCTTCCATCTAGATATGCAATGATGTTGATTAG
CTGGATAATGGCGCTGTCTCCTTCGTTCTCGATTCTCTCGTAAGCTAACG
ATAAGGTAGTGTAAACGGTCGCTTTTCCGATCTGATCCGATTCCTTTGAC
ATGTACtccttttgtctctttttaaaCTCGATAATGTAAGTTTCTATATC
AATGCCATGCTCGTTAATGTAGGATACTGCTTGTTGCATACCTAAAGGAT
GACACCCGAGCATTTCATAGAGCTGCTTGGTCGTGGATTCTGTTTCATCC
CGTTTGATATTTTGTTGAAGAAAGATTTGAGATTCTTCAACTGTGAAAAC
ATCGAGCTTGATAACTCGGAAACGTGGATCCCATACTTGACACTGTGATG
TGATTAGCATGTGTATTGCATCATAGTTTGCCGTTGGAATGAATTTACCA
ACGTCATTTTGGTCATCAGCGTTATCGAAGATAAATAGAACTTTCCTTGG
AATGTTTCCTTCTTGTTCCGTACTAAAGAACTTGTACACAAGGTCCGCAA
TCTCCTCTAACTTTCTGTACGATCCGTCAGGGTTTTTGGTGTTGATTCCG
CATCGGTCAGCAATATCGCCAAAGGATTTCAGCATAGACATATAGTCATT
ACAATTCACCCAACAGACTACGTCCTCGTAATACTTCTTTTGGAAGGTCT
TCCAGTAGACTTTAGCTTCTTCAGATTTTCCGCAACCTGGTAATCCACTG
ACAACAACTCCAAACTTTGTGTCATCTGCATGTTGTAGAAGCATTGCTGC
ATGGATGTTATCAATAACTGCTTTCCGATGGTGATGATTGGCAACAGGAG
GTTGACAGTTATAATTGAAGGATTTGATATTTAGCAATCTTTTAGCTTCA
GCATCCATCactctcattttttttattctttccaAATCCTCCTTTGGTAC
TCCTAAATCCATCAAAGGTTTCTCGACTGCATCAAAGATATCGTTGAATT
GTTGCTCGTCGAGTTCAGGTGGTGTTTTATGTTGCAACCAGTTTCGGACT
TTCTTCAGAATATGATGCTCGCTATTGAAAAACTCTGTCAGTACAAAAAT
CAGCAAGCTTGTATCAAACAGTTTAACATTTGTCTCGCCGTGCGATGGCA
GGAGAAGGTTAAACTGGTCAGCATTGATGGTCTTATTTTTCCTGCATTTT
AGGATTTGCTTTTTCTTGGTTTCAAAGAATTTGTAGATTTCCTGAGGATC
TTCAGTCTTCATTTCATCAAATACTTTCTCCTGAAGTTTCTCGTCAAACT
TCCCGCgtaatttttgacatttgtaatAACGTATTTCATCTTCAGTAGCC
ACCAACTCTGGTTTCTCTTCCATCAtgc Run BLAST on NCBI transcript from alignment at scaffold_218:519522..521349+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052590 ID=TCONS_00052590|Name=TCONS_00052590|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at scaffold_218:519522..521349+ (Clytia hemisphaerica)
AAATGATGGTCATCATCATGTTTTTCGAGtaaattgtttaaaatctgTTC
GATAAAAAATTGAAGTCTCTGAATGTCTCCgtttgttttgaataaattta
tcagTAATACTTGATGTTCTTTGAATTCCATTAAGAGTGCACTATCTTGA
TCACTATTGCAAATATGATGGAAATGCTGATACCAGAAATATCCATCCAT
CTTCAGGTTATTTCTTTCACATATCTTAAGATCTCCAATGAAAACTGCTG
CAAGCCTTTGTATTATTTCTTCACGTTTATCAATTTGGTGAATTTTCAAG
AATGCTTGTGTTAAGGAATGACACGTTAGTTGCTGTTCAGCATACGAAGT
GTTGCTATTTGACAATGAGATATTAAtgattgaatattttgataaaaaat
gaagtaTGTCATTCAACGCTGATAAGTCGTCGTTGACAGATTTGAGTAAG
AGACCTTTCTTGATATCTCTTCCATCTAGATATGCAATGATGTTGATTAG
CTGGATAATGGCGCTGTCTCCTTCGTTCTCGATTCTCTCGTAAGCTAACG
ATAAGGTAGTGTAAACGGTCGCTTTTCCGATCTGATCCGATTCCTTTGAC
ATGTACtccttttgtctctttttaaaCTCGATAATGTAAGTTTCTATATC
AATGCCATGCTCGTTAATGTAGGATACTGCTTGTTGCATACCTAAAGGAT
GACACCCGAGCATTTCATAGAGCTGCTTGGTCGTGGATTCTGTTTCATCC
CGTTTGATATTTTGTTGAAGAAAGATTTGAGATTCTTCAACTGTGAAAAC
ATCGAGCTTGATAACTCGGAAACGTGGATCCCATACTTGACACTGTGATG
TGATTAGCATGTGTATTGCATCATAGTTTGCCGTTGGAATGAATTTACCA
ACGTCATTTTGGTCATCAGCGTTATCGAAGATAAATAGAACTTTCCTTGG
AATGTTTCCTTCTTGTTCCGTACTAAAGAACTTGTACACAAGGTCCGCAA
TCTCCTCTAACTTTCTGTACGATCCGTCAGGGTTTTTGGTGTTGATTCCG
CATCGGTCAGCAATATCGCCAAAGGATTTCAGCATAGACATATAGTCATT
ACAATTCACCCAACAGACTACGTCCTCGTAATACTTCTTTTGGAAGGTCT
TCCAGTAGACTTTAGCTTCTTCAGATTTTCCGCAACCTGGTAATCCACTG
ACAACAACTCCAAACTTTGTGTCATCTGCATGTTGTAGAAGCATTGCTGC
ATGGATGTTATCAATAACTGCTTTCCGATGGTGATGATTGGCAACAGGAG
GTTGACAGTTATAATTGAAGGATTTGATATTTAGCAATCTTTTAGCTTCA
GCATCCATCactctcattttttttattctttccaAATCCTCCTTTGGTAC
TCCTAAATCCATCAAAGGTTTCTCGACTGCATCAAAGATATCGTTGAATT
GTTGCTCGTCGAGTTCAGGTGGTGTTTTATGTTGCAACCAGTTTCGGACT
TTCTTCAGAATATGATGCTCGCTATTGAAAAACTCTGTCAGTACAAAAAT
CAGCAAGCTTGTATCAAACAGTTTAACATTTGTCTCGCCGTGCGATGGCA
GGAGAAGGTTAAACTGGTCAGCATTGATGGTCTTATTTTTCCTGCATTTT
AGGATTTGCTTTTTCTTGGTTTCAAAGAATTTGTAGATTTCCTGAGGATC
TTCAGTCTTCATTTCATCAAATACTTTCTCCTGAAGTTTCTCGTCAAACT
TCCCGCgtaatttttgacatttgtaatAACGTATTTCATCTTCAGTAGCC
ACCAACTCTGGTTTCTCTTCCATCAtgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052590-exon-scaffold_218-1491911889:519522..521349 | TCONS_00052590-exon-scaffold_218-1491911889:519522..521349 | Clytia hemisphaerica | exon |
| TCONS_00052590-exon-scaffold_218-1510915933:519522..521349 | TCONS_00052590-exon-scaffold_218-1510915933:519522..521349 | Clytia hemisphaerica | exon |
| TCONS_00052590-exon-scaffold_218-1575043694:519522..521349 | TCONS_00052590-exon-scaffold_218-1575043694:519522..521349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:519522..521349 + |
Blast
The following BLAST results are available for this feature:
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