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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052596 ID=TCONS_00052596|Name=TCONS_00052596|organism=Clytia hemisphaerica|type=transcript|length=1621bp
aaccaattttaacaaatgacccctcatttttctcacaaaggtaaggactt
tcaaataaaattagtttggttttcaaaatttgaggggaaaacTTTGACCT
GTCCACCCTACTATAAATCAAACCATAGTCAATAAAAGAAAGCCCAGTCT
GGAaaccttttgtttctttccacaGATTCTTATTTGAGCTTGCGTTGATA
GATTATttagttttgctttttttttNTCAATAAAAGAAAGCCCAGTCTGG
AaaccttttgtttctttccacaGATTCTTATTTGAGCTTGCGTTGATAGA
TTATttagttttgctttttttttatcaTGTGATCAAATCATACACCAATC
CCACAGGGAGCACTTGGTAATGTTATCAAAACTTTAGCAAatggattttt
atcttttggtattaacaaaggaaaaagctaacaaagaGTTAAAAActata
agcttccagaccagagGTTTTCAGCAAACTATGATCAAACTCTCGAACAT
TCGCAATTGTTTAAAGCAATTTGGAGTTGTCCATTTCAATCAATAAAAAG
TTTGCCCAGCCCTTTCATATCCTCACCTCTTCCTTTAAAAACTATAGGTC
AAAATTTTCACATTGATGTCACAAATTAATTGTACTCTTTTCTctgctga
aaattttcaacttttgcgTGTGTACTGGAGCGCACATCTTGATCGacaat
ttttcaatcaatcagAAAGAAGTCCACCTGTTTTTTTACAGAAATCAAAC
ATTGaccaggccatattttagaaaggcagggcagcgtccgttggtggcca
aaaagggcactctttcttgtgtttttctgctaaaaaaggctgtttttacc
aaaatttcagaGATTTCAGGAGGGTCAGcgggcatgaaaaatggtctGTT
GACTGTGCGACCAAATCTAGTTTAAGAATTTTGACCTAACATGCACCCTC
GTCCAATCAATGGAAAAGAGGTCTTTACTTGCATAAATTGTATTGCAACA
CGTCCCTGAAAAATTACCATTTTTACAGTTACCAGACCTCAGGTTTACTT
GTACtgtatatctttttatttggaCCAAATGtaacaaaccaataaaattg
attttagatcaaaaacaataattttttaatcttttgggtttttttttctc
gctaAAATTACTTAATTTGCACATCAATCTTCTAAAGCAATGATTGGAAT
TTAAGCTTTTCTTTTTTTCCTTTTATGTGATGTCTACCAACAGATCAAAG
ACTCCAGGTGGTAAGCTTGTATATTTATACACCAAGAAGAAGGGAACAGT
ACCAAAATGTGGAGATTTCGGCACCCCATTGAGAGGTATTAAAGCTGTAC
GTCCACACAAATTGAAGACTTTATCCAAAAGGAATAAGACTGTATCAAGA
CCATATGGAGGTGTTTTGTGTGCTAAAGCCGTCCGTGAAAGAATCGTTCG
TGCTTTCTTAATCGAAGAACAAAAATTGGTTGTCCGTGTATTGAGAGCTC
AACAAGGCAAAGGGAAATCATCGTGATTTTTTCATGTGAATATAACATAA
AAATTGAAATCGTTGTTGTTGTTGTTTATTTCCTTGGGACAGTCATTTTA
CAAGTACAATTTATTCTTTGG Run BLAST on NCBI transcript from alignment at scaffold_218:607998..614299+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052596 ID=TCONS_00052596|Name=TCONS_00052596|organism=Clytia hemisphaerica|type=transcript|length=6302bp|location=Sequence derived from alignment at scaffold_218:607998..614299+ (Clytia hemisphaerica)
aaccaattttaacaaatgacccctcatttttctcacaaaggtaaggactt
tcaaataaaattagtttggttttcaaaatttgaggggaaaacTTTGACCT
GTCCACCCTACTATAAATCAAACCATAGTCAATAAAAGAAAGCCCAGTCT
GGAaaccttttgtttctttccacaGATTCTTATTTGAGCTTGCGTTGATA
GATTATttagttttgctttttttttNTCAATAAAAGAAAGCCCAGTCTGG
AaaccttttgtttctttccacaGATTCTTATTTGAGCTTGCGTTGATAGA
TTATttagttttgctttttttttatcaTGTGATCAAATCATACACCAATC
CCACAGGGAGCACTTGGTAATGTTATCAAAACTTTAGCAAatggattttt
atcttttggtattaacaaaggaaaaagctaacaaagaGTTAAAAActata
agcttccagaccagagGTTTTCAGCAAACTATGATCAAACTCTCGAACAT
TCGCAATTGTTTAAAGCAATTTGGAGTTGTCCATTTCAATCAATAAAAAG
TTTGCCCAGCCCTTTCATATCCTCACCTCTTCCTTTAAAAACTATAGGTC
AAAATTTTCACATTGATGTCACAAATTAATTGTACTCTTTTCTctgctga
aaattttcaacttttgcgTGTGTACTGGAGCGCACATCTTGATCGacaat
ttttcaatcaatcagAAAGAAGTCCACCTGTTTTTTTACAGAAATCAAAC
ATTGaccaggccatattttagaaaggcagggcagcgtccgttggtggcca
aaaagggcactctttcttgtgtttttctgctaaaaaaggctgtttttacc
aaaatttcagaGATTTCAGGAGGGTCAGcgggcatgaaaaatggtctGTT
GACTGTGCGACCAAATCTAGTTTAAGAATTTTGACCTAACATGCACCCTC
GTCCAATCAATGGAAAAGAGGTCTTTACTTGCATAAATTGTATTGCAACA
CGTCCCTGAAAAATTACCATTTTTACAGTTACCAGACCTCAGGTTTACTT
GTACtgtatatctttttatttggaCCAAATGtaacaaaccaataaaattg
attttagatcaaaaacaataattttttaatcttttgggtttttttttctc
gctaAAATTACTTAATTTGCACATCAATCTTCTAAAGCAATGATTGGAAT
TTAAGCTTTTCTTTTTTTCCTTTTATGTGATGTCTACCAACAGATCAAAG
ACTCCAGGTTAGTGAACAGTATTTGAGTTTTTTTCATTGAATGGCTTTAT
TGATACCTAAAGCCTCCTTAAAACTTGTCAAAATTTGTAGGGGAAGCATC
TTAGGGACTCAAGGCCCCCTTAAAATCTCATGATTGACAAGTGTCACCTT
GAAATGTTGACCATTGGTTTGGCCTTCTGTCTGGTtggtattttacagac
aagCACGTGAACTTGACcaaaatcatgtattgactgattgacttgttcga
tttgactgaaatttgtcaaataaaagcGACTAGTNATTATCAGAAAAAGT
TGTCCAAATtacatttccagaaaaaaagtcaaattttgccATTTCATCAT
ACACCCTAGAATAGAAAAAATTTGATACTATGACTATTTGGTACCTTGCT
GACCGGTCTGTAAAGTGCATGTTGGCCACCTGCTAGATTTCAGGAACTAC
AGGTGCTTTTGACTTAATTTCCACCAGTTATAGATACCACAAggcagtgt
gcaaaatttcaatttagtcaCGTGAGAAGTTTGTTGGTATTTGACAGACC
GGTccattttttacctaaaatgttGATGGCGTTTTATAACTTTGATAATG
TTTTCAGGTGGTAAGCTTGTATATTTATACACCAAGAAGAAGGGAACAGT
ACCAAAATGTGGAGATTTCGGCACCCCATTGAGAGGTGTAAGtaatttat
attttctttaactGAGAAAGGGATGGGTGAATAAAGCTTCCAGACTCTAA
AATAATGCAATCATGAACAAAATTTATTTCCATTGCTGTTTCTTTTTTAA
CCTACCTGGGGGTTCTTAAATTTAGCCATTGTTTGCTcatctgttaccaa
cttttccaattatttttatttatttttttcatagtgaTGGAAAATGATAT
ATCCCAAAAAGCcagattttcaaaacttttttgggaaatttgggTCAAAA
AGTGCTTAAAACTGGGTCTTTTTGattaatttcttattttttgaaccttc
ttggaggtcctataaattaatctgtgtttgtctgttaccaacttttctca
ggattgaatcaaaggaattttgtgatttttagtacaaaggtgcaaaatgg
tgaaTACCAAAATGTGATagagctcgatttttgaaaaaaaatttgggcca
atttgggcccaaaaatagtgttttttggaCTGTTGAAAAtctgttcatta
gtttttcctaatgtTTTGTACAAATACGTAGAATTACAGTGCGCTAAATA
TGAAAAGGCtcatttttggaaaagaaaaatattgggccCCAAAAAAGGGT
TTCTTGGACTTGTGAAAAAtctgttcattagtttttcctaattttttgta
caaagactTAAATATCTGTTTAAGGGCTTAATTCAAACACCATAACAAAA
TCGACCTCCCCAACCTAAAAGATGCTATATCATGATCGGAACGTGTTNCC
GCTACTCAATATGAGTGGTAACATCTTTAAAAGGTAAATTTGTTTGAATT
GACATCCAGTTGTGCTACTAttaagctaaggctacactgatagttttttc
aggcggctgcaatgcaattgttgcattgcagccgcctgaaaGATGTTGCT
GTCTAGCCATCTAAAAAAAGGAACcaggaaaaacgtcaaaaaaattgcag
attcttctgcaacaaaatcagttACACTTACAATTTGttctgcaatattt
ttattgcgtTGCAGAGCAATtgcagaaaaaattgacgtgctacatttttc
aatttctcgcGCGCTTGCAACGCAACGCtaattgcattgcagccgcctga
aaaaactatcagtgtagccttagctttaTGAGCTTTTTAAAATCTGTGTT
TTCTTACTAATATCTAGccattttatttatattcttattacatcaatcat
CAGGTTAGGCCATTTAGCATATTGTAGCTTGTTTCTACTGAGGATTGAAC
CCCTGTTGTTGTTAGAACATCAGTCTGCTCGACACCCAAATGTTTGTaat
ataattcaaaattttcacattAGATTAAAGCTGTACGTCCACACAAATTG
AAGACTTTATCCAAAAGGAATAAGACTGTATCAAGACCATATGGAGGTGT
TTTGTGTGCTAAAGCCGTCCGTGAAAGGTATTTATGATGTTTATCTGTTT
TGCTAGCCAGGGTCCAATGCTAACATGGAACTGTTATGCATCGAAATAAG
GATTAAGAAAATGcatcacaaattttgacaagcATGTTTTTGAATCTTTA
AATGGATTACTTTCCACTTTTTGCTTATAATTAATTGAAAGAATGTATCG
CCAATTCATAGTGCGATTAAGCTAATTCGATCACTGATTGTGTAATTACA
CACCTACATTTAgggggtcttgggttttgatgaaccaaaagtaaggggtg
ttaaaagtatgactttcctaagggggTCTTCTTAGATAAGTGGATCTTCC
ttgaatacactcttctcgagatgcataaatttattgttgtcctcgttttc
aaacagatttaattgctataaaattacatattcacaatcataattgtgtt
gtttacacctcatgagacattttgaaattcaagtaattttgttttagagt
taatgtttgcgttttgggaatttaaattggttaaatgtataatttcatag
caatgaaatctgtttgaaaacgaggacaacaataaatttatgcatctcga
gaagagtgtattatgcaaaatttcaattttctgattttctaagTAGGGag
tgtgaaattttaaatgaatttcctaagggggggttagcacttaaaggctt
acctaaggggggtcaagacccctctagaaactgaTAATTTGAGTGGCTGC
TCGACAATCATCACAAAAATATAacagttttagatattttaacaTCTTTC
GGAATTTAAAGCTTGGTTGATGATTGTATTGTCAACCACCTCAATTGATT
GGATTTTTTCATTCAAGGGGGGTGGTTCCAGGTGGCTTCCAGCCATATTT
aaacattttgagcttttagatcttAAGTCTTGAGTCTCACAATAAAacta
aaactctactttccaattGTACTTCAAAGCACGAAAGAATCtcttattga
atttaaaaattttgagggAATTGCCTtaagtctttttgaaatttttgtat
gtATCAAATCTTCAATCGTTTTTTCTCAACTCGTTTTCTCACTTAACAAA
CGACATAAGTGGGCCAGCGCGTATTGTGCTAATTCTtgtcatagtgcgga
aaggggtctgatccccccttcttaaatgattcCCCCTTcttggccccccc
cccccaacgtttaaaaatgcctatcccccaagggttttgagctaaatttt
cgaaaatatatagTATATAGAAcccattcaaatatagcgcttttaattct
cctataaacaagcaaaaaaatttccacaattatatttgactatcaaaagt
tacaggcattcttgtttccgcTGCCAATTATAtcagtcaggtagaattag
gtcATAAACTGCCAACACCGTTTAAAACGCTTATTTTTGCTGAGTCGgca
ctttttttcgattttaaaatcGCTATTATATCTCGCCAACAGTTGGTTTG
AACATactaaaccatatatttttctgaaagcccaTGATCAGGGCTACATG
ACTAGCTCATCGACGTTCCAATTTATCCTTCtcagtaaaaatgctgacgt
catcaaaatcgtcattttttggactttagaggtcatatctcgggaccacg
tggtccaaatgtcaaaagtgaccccattgTCTTTATCTACTCATCGAGAG
GAATCTCCCTGTCTAGTTATTTGTGAcatttgaaaacaattaaaaatcag
TTATCAAGGGTTCCCCCTTgattaattgtagaaaaaagtaccatggctgc
cattatggatttgagggtATTCCCATCTTCATGGGGgtggggcttttttt
ttggtgattcctgacattttcctggacctctgtgcaaaatttcatctcta
caccatttttgtctgggtagttatgcaattctacctgactatatCTGGAC
ATGGTTGCCACGTCTGCCAGAAAAGTCAGGAATTGGCGTACATGTCTGGA
AAAGAATAGAATTTGaaggaaatagtcctgaatgaaGCCTAGTAAACTTT
CCGGTAATAGGAAACTTTTACCTTGGCATTTGAAATtcctaaaaaaaatt
tgctCGTTACGCTCGCAACCAAATCTTTAAATCGTgttcacttttaaatt
tttcatgacGTTGTATTCCTCAATCTGGCCTTTCAAATGACATTAAGGAA
AGACTGAAAACCTTCCTAATGGATAAAATGTCTGGAAAATACTAAGTTTT
TTGTCGAAATATCTGGAAATTCTCTGatattttcaggtaaaaaatctGGC
TTTTTAGACTGAAagtctggaatttttttttttgaacttGGCAAACCTGT
AGCAACCCTACTGGATACATTTCAATTTTGTTTCTCTGCACTCAAAGAGC
TGTAGAAACCAATTGAAACCGTTCCTTTCCCACGCACTGCTACCTTTTTC
ATGATATGAAAGTAGCCTCTACTGGTGAACCCAATGTACCAGTCTTGTAC
TATGCTTTCTTCGtcaaatacaaatttattttttagcgGGTCGAAGCTTT
AAGGGTCTTTTCTATGAAAAGCTCATGAATTGAACAAcgacaatagacga
tatcgcgtttagataaatgcaatgcattctggtttctcggggacccTCAA
GGGAATTATAATATATTCCAGATCATTATATAATCGACATAATAATTCCT
TTGAGAGTCCCCGAGAAACCAGAATGCTATTACTATCAAAATTTCAACCT
TATTTTAATTTTATCTATTTAGAATCGTTCGTGCTTTCTTAATCGAAGAA
CAAAAATTGGTTGTCCGTGTATTGAGAGCTCAACAAGGCAAAGGGAAATC
ATCGTGATTTTTTCATGTGAATATAACATAAAAATTGAAATCGTTGTTGT
TGTTGTTTATTTCCTTGGGACAGTCATTTTACAAGTACAATTTATTCTTT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052596-exon-scaffold_218-1491911889:607998..609254 | TCONS_00052596-exon-scaffold_218-1491911889:607998..609254 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1510915933:607998..609254 | TCONS_00052596-exon-scaffold_218-1510915933:607998..609254 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1575043694:607998..609254 | TCONS_00052596-exon-scaffold_218-1575043694:607998..609254 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1491911889:609855..609934 | TCONS_00052596-exon-scaffold_218-1491911889:609855..609934 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1510915933:609855..609934 | TCONS_00052596-exon-scaffold_218-1510915933:609855..609934 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1575043694:609855..609934 | TCONS_00052596-exon-scaffold_218-1575043694:609855..609934 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1491911889:611271..611374 | TCONS_00052596-exon-scaffold_218-1491911889:611271..611374 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1510915933:611271..611374 | TCONS_00052596-exon-scaffold_218-1510915933:611271..611374 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1575043694:611271..611374 | TCONS_00052596-exon-scaffold_218-1575043694:611271..611374 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1491911889:614120..614299 | TCONS_00052596-exon-scaffold_218-1491911889:614120..614299 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1510915933:614120..614299 | TCONS_00052596-exon-scaffold_218-1510915933:614120..614299 | Clytia hemisphaerica | exon |
| TCONS_00052596-exon-scaffold_218-1575043694:614120..614299 | TCONS_00052596-exon-scaffold_218-1575043694:614120..614299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:607998..614299 + |
Blast
BLAST of TCONS_00052596 vs. Swiss-Prot (Human)
Match: RL34 (60S ribosomal protein L34 OS=Homo sapiens GN=RPL34 PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 3.087e-26 Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 3
Query: 1236 TNRSKTPGGKLVYLYTKKKGTVPK--CGDFGTPLRGIKAVRPHKLKTLSKRNKTVSRPYGGVLCAKAVRERIVRAFLIEEQKLVVRVLRAQ 1502
T S+TPG ++VYLYTKK G PK CG LRG++AVRP L LSK K VSR YGG +CAK VR+RI RAFLIEEQK+VV+VL+AQ
Sbjct: 20 TRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQ 110
The following BLAST results are available for this feature:
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