TCONS_00052619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052619
Unique NameTCONS_00052619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052619 ID=TCONS_00052619|Name=TCONS_00052619|organism=Clytia hemisphaerica|type=transcript|length=1172bp
CAGTGATTGACTAATACACTCTATTAGAAACAAAAAATGGATACTAGCAT
TGGTGGTTATGATATCGAATTTGTCAATGATGAGCATGATATAACTTGCG
TCATTTGTTTGGATGTTTTATGTCAACCTATGCAAGCAGTAAAGTGTGGT
CACAGATTTTGCAAGAAATGCATGTTTGGTTTGCATAGAGTAATCATCTA
AATGAATGCCAGTTTGAAGAGATCGAATGTCTTAATGGTTGTGGTGAAAC
ATTCCAAAGAATGAACCTTGAAAAGCACGATACAGAAGATTGTCTGCATA
GAATGATGACTTGTTTATTTTGCCACGATGACTATCCTTTTCATCAGGAG
CAGGATCACAATAAAAATTGTCAATACTTTCCGCTTTGTTGTGAGTTTTG
CCAGAATGGAAATATTCCGAGATGTCAGATGGAAAATCATATTAATCAAG
ACTGTGGCAAGGCTCCACGCAAGTGTGAATTTGCACACTTAGGATGTGat
gaaaagATAAAGCTTCAGGATGTTCAAAACCACAACGAGTTATTTCAAGA
GCACCATATGAAACTAGCCATACAAGAGTTGGTACGTAAAGATGAACGAT
TGGtgactttacaaaaagaaaacaaccgattggttaaaaaaaataacaga
ctacgaaaagaaaataaaaaccaaaaggATGAAATTAAATGAATGGGGTT
GTCAATTGCAGAATTGTCTGAAAACAGCTCAAACGAGCATAAATGGAAAA
TCTTCAACTTCAGCTATGAAATCTCGAAAGCAATGACTCATTTCAACCAC
TTTTTGAGTAAATCGTTTTACACTGATCTAGGATATCATGTTCAAGTCGA
CCTGTACCCAAATATTAATCATAGTAATGTTGTGGCTATTTATATCAAAA
CTATAAGTGGAGAATACGATGAAACCTTGCGCTGGCCAATTCCTATGACT
CAATTCTACATTCACCTTTCGAGTTGCGATGGGTGTCCATGCATAGCCAA
TATGCATGTAAACTCTCACGAAAATATGCAGACTCATTTGGCTTTACAAA
GGCCTCCACATTCTAACACAGGAGCTGGTTTCCTCAATCAATTATCCCTT
GCTGATCTACAAAAGGCGTTGATTAATGATACGCTTATTTTGACATTGAA
AGTGCATTCATTGTAATGCTAG
Run BLAST on NCBI

transcript from alignment at scaffold_218:693765..699237+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052619 ID=TCONS_00052619|Name=TCONS_00052619|organism=Clytia hemisphaerica|type=transcript|length=5473bp|location=Sequence derived from alignment at scaffold_218:693765..699237+ (Clytia hemisphaerica)
CAGTGATTGACTAATACACTCTATTAGAAACAAAAAATGGATACTAGCAT
TGGTGGTTATGATATCGAATTTGTCAATGATGAGCATGATATAACTTGCG
TCATTTGTTTGGATGTTTTATGTCAACCTATGCAAGCAGTAAAGTGTGGT
CACAGATTTTGCAAGAAATGCATGTTTGGTTTGCATAGAGTGTAAGTAGA
ATAGtatttccttttcctttttcttttttcttttttttccttttcttatt
AATCGTACTAggtaattttctttcaagaaaaAGCCAGTTTTATcccaaca
aaaaaacaattttgaaagcaATCAATGGATGAAGGAAAAAGCGCTTGCTA
AGTTAAATTTTTGATCAGCGATTAAAAACTTCCACCAACATTTAGAAAGA
TCAAAAGTTTTCATCAGAGCGGTGATCGCTTTTGAAAGTGAAGAGGGGGT
TCGACCAGGTTCGATATAAAGGGTCGTGTATGTTTAAGCACTTTCAAAAA
GTActtgttccaatttacaatACATTTCCCCAATCATTTCTGTTTTGTTA
GTAGAAGATTCAGTCGGCTCTGAATCTAATTCAAAATATTGCCTTATGAT
TTCAACCTTTTGATTTTCCATAGTGGAAAGCGGAAGTATAAATGCCCCAT
AGACCGATCAACAATTACTGTAAGACTTTACGAGTTTTAACTTCAGTTTA
GATTTCTTTATCAATTTACTGTAAGACTTTACGAGTTTTAACTTCAGTTT
AAATTTCTTTAACAATTATTGTAAGACTTTACGAGTTTTAACTTCAGTTT
AAATTTGTTTAACAATTATTGTAAGACTTCGAATAGATATTAACCTTAGT
TTAACACGAACCTCAGTACATTTTTGTCCAATCCAAAATACTTCGGAACA
TATTTTTGCGTTAATTTAGCTTATTAAAATGGCTATCTATCTACTTAACT
CTAGGTTATAACTAGGATCAATAGACGTGTTTCTACCCGACAAAAAGTTG
ATAGATTATTGCttgaattttctttaaagttatTCCGAGACACTGGAAAG
GAGAGAGAGATATTGAATAGTGTTGTCAGATGTATTCACAATGAGAGTGG
ATGTGAATGGACACAAGAGCTGCGGGAGTTAAAGGTGAGTTTGGTGAGGA
TCCATTTCAACAAGTAAGTTACATTTGAATTTGTCTGcgagctagacgac
taattcagacatagtagagataaagcaaaaagtaatggaggaaTAATTAT
AGTCTATACAGCCAAATATAGTTTATataaactaaatcccgtaacaataa
tcgtattatcatataacgcctatactactgtattacaagcattataaacg
actccgaTCTACATTTGAATAATTATTGTATTTAAAATGCTATCTTATAA
GCTTGTTTAGCCAAGTTTAACTTTTATAGAAACTGCTGGTCCTATAAACT
AACCCGGGTGATCAAAATTGCTGACCCGAAAAATTGTACCCTTTTAGTGT
TCGGAGAAAATTTCTCAAGGTTTGATCAAACTTGAACCAACAAATCAGCC
TCTCACTTAGTTTCTTTTCACCCTTTTAGCTCACTCCCGGAAGCTTTGAT
TggatgttttttcattcaacgtTAGATATTGGTGTCTACAGTTGAACTCG
TGTAGTTTCGAACTAAATAAGTTCAACTGTTCAAATGAGTTCAACTGTAT
TAAgtttttgatttaattcttcGACGATCCTTTCTTGTTTGCAGAATCAT
CTAAATGAATGCCAGTTTGAAGAGATCGAATGTCTTAATGGTTGTGGTGA
AACATTCCAAAGAATGAACCTTGAAAAGCACGATACAGAAGATTGTCTGC
ATAGAATGATGACTTGTTTATTTTGCCACGATGACTATCCTTTTCATCAG
GAGCAGGTAGGTGAGGCTTCCTGATGTAGCTGAAATCTGTACCAAAAATG
GTGAAGTTTCTAGCTCCGAAGGATAaacagttcattttttcttcttcttc
atttttcatcttcattttcaaaaatcttttaagtTATTTTCTAAGAAATA
GAATGGCTCTGAATTAGCTTTTCGACGAGTACTAATGTGTTAAGTATGTG
GCTATTGTTGAAaaaaatggcaagcaaaacaaGAATTAGTTCACATAGTT
AGGATaactttttaatctttttttatggtatgtatgtatgtaatagttta
tttcaagttgacgaacaggtagcaacaaaggctaataaaagtcaacgcta
ctttacaatttgtaaggtgattacagTTCAGGCacaagggcctctaaacc
gttcttgtacaaaaaatctttttgaaatataatttttcacgaGGGCTTCC
TCGTACCCTCCATTTAAAATCGTCATTCGATCTGGCTTTATTCATCTCGT
CTGCTCTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATAATGTAGCGTTCGTTGGCATTTATGACATTGAATTCTCATTTTT
TCATCGTCTTTTATACAATTATGCTCGGTACATCGATTGTTGTCACTCGC
ATCTTCGTCAGGGATCATGATCTTGCCAGGTGATGTcgtttttggttgaa
atttggctattttttccatatttttaaaattttattgaaaattcttcatt
ttgaaaaataaacgaaGAGCACAACCTTTctgtttgacgtcaaattttgg
tAGCGGTGGGGCCAAGTCTGGAGTTCCGTGACGACCTAGCCATTGTTAGC
CTATCcgaaagaacagtatattataagatatttttgtttttgtttcgttt
TTATGGCCCAAAATCGGAAATTGCCCCATTTCATATAGCTTAAATGAAGT
ACTTGTCGGTATAAATTTTCAAAGTGAGAATCATTTTTCAGATACCCACA
TAGTACTCTTACTTTTTTACAGGATCACAATAAAAATTGTCAATACTTTC
CGCTTTGTTGTGAGTTTTGCCAGAATGGAAATATTCCGAGATGTCAGGTG
ATTTTGTACTTTACTATAACTTAGCTCTTCTCCACTTCTAAAGTTTTTAC
CCCGCGCTGAATTAATTCCAAATTGAAAGATATTCTTACGGTAAACTTCT
CTGAAGGCATGTTCACAAGATCTTAGTAATTCAACTTTCCACCTCTTTTT
AGATGGAAAATCATATTAATCAAGACTGTGGCAAGGCTCCACGCAAGTGT
GAATTTGCACACTTAGGATGTGatgaaaaggttgatttttttttcatatc
attTTAGGTCAAGTTTTCAGCAACTTTCGTATATTCCAGTAATATTTTTA
TCTCTAACTTCTTTTGTTCCTTTTTCGAATTCTTGTTAATTTACAGTTCT
AAAAATGTTACCACTGCACAATCAGTTTTCGAAGAGAATTCACCGTTATA
TTACAtataataccgagtttatgtataccttatcggccaaaatttagtcg
gccttaattattagtgggccctaattttagtcggccctaattttagtcac
ctcgtcaaaacttagtcactaagggccgactaataattaagaccgactaa
aaatgtgggccatttctaaatttaccaGCACCagcagatggaaaatagga
gaaagcttaaaatactggaaaataaggAGAGCTTAATtagaaacttttaa
tttggcccaaatttttagtcggccttaattttagtcggccctaattttag
tcaccgagccaaaatttagtcacttagggccgactaagttttggccgata
aggtatgtgTTTTTCTGCATCGGAGACGGTAAAATTCTAATTTGactaca
tcctgactgactgaggacgacggtagaTCAGAACTTTTAccatcctcgat
tttgcgggtcaaaactgcgtgTTATTCCAAATCATTTCACTCACTTtacc
tcaaaagtgcaaatgcataaactcgctaattaTACGTCTTTTCAAAACGC
AATCTAGATAAAGCTTCAGGATGTTCAAAACCACAACGAGTTATTTCAAG
AGCACCATATGAAACTAGCCATACAAGAGTTGGTACGTAAAGATGAACGA
TTGGtgactttacaaaaagaaaacaaccgattggttaaaaaaaataacag
actacgaaaagaaaataaaaaccaaaaggATGAAATTAAATGAATGGGGT
TGTCAATTGCAGAATTGTCTGAAAACAGCTCAAACGAGCATAAATGGAAA
ATCTTCAACTTCAGCTATGAAATCTCGAAAGCAATGACTCATTTCAACCA
CTTTTTGAGTAAATCGTTTTACACTGATCTAGGATATCATGTTCAAGTCG
ACCTGTACCCAAATATTAATCATAGTAATGTTGTGGCTATTTATATCAAA
ACTATAAGTGGAGAATACGATGAAACCTTGCGCTGGCCAATTCCTATGAC
TCAATTCTACATTCACCTTTCGAGTTGCGATGGGTGTCCATGCATAGCCA
ATATGCATGTAAACTCTCACGAAAATATGCAGACTCATTTGGCTTTACAA
AGGCCTCCACATTCTAACACAGGAGCTGGTTTCCTCAATCAATTATCCCT
TGCTGATCTACAAAAGGCGTTGATTAATGATACGCTTATTTTGACATTGA
AAGTGCATTCATTGTAATGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033260XLOC_033260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052619-exon-scaffold_218-1491911889:693765..693955TCONS_00052619-exon-scaffold_218-1491911889:693765..693955Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1510915933:693765..693955TCONS_00052619-exon-scaffold_218-1510915933:693765..693955Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1575043694:693765..693955TCONS_00052619-exon-scaffold_218-1575043694:693765..693955Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1491911889:695509..695670TCONS_00052619-exon-scaffold_218-1491911889:695509..695670Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1510915933:695509..695670TCONS_00052619-exon-scaffold_218-1510915933:695509..695670Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1575043694:695509..695670TCONS_00052619-exon-scaffold_218-1575043694:695509..695670Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1491911889:697537..697611TCONS_00052619-exon-scaffold_218-1491911889:697537..697611Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1510915933:697537..697611TCONS_00052619-exon-scaffold_218-1510915933:697537..697611Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1575043694:697537..697611TCONS_00052619-exon-scaffold_218-1575043694:697537..697611Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1491911889:697767..697844TCONS_00052619-exon-scaffold_218-1491911889:697767..697844Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1510915933:697767..697844TCONS_00052619-exon-scaffold_218-1510915933:697767..697844Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1575043694:697767..697844TCONS_00052619-exon-scaffold_218-1575043694:697767..697844Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1491911889:698572..699237TCONS_00052619-exon-scaffold_218-1491911889:698572..699237Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1510915933:698572..699237TCONS_00052619-exon-scaffold_218-1510915933:698572..699237Clytia hemisphaericaexon
TCONS_00052619-exon-scaffold_218-1575043694:698572..699237TCONS_00052619-exon-scaffold_218-1575043694:698572..699237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:693765..699237 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83001	1.56381	0.420474	0.501408	0	0	0.294265	0	0.475257	0.763257	0.258062	0.366063	0.0523291	0.0386167	0.686807	0.55254	1.13296	1.27992	0.622815	0.28576	0	0.420641	3.37383	2.44373	1.27954	0	0.704817	0.420632	2.00972	2.62557
Blast
[Close]
BLAST of TCONS_00052619 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.063e-20
Identity = 97/358 (27.09%), Postives = 151/358 (42.18%), Query Frame = 3 
Query:  192 NHLNECQFEEIECLNGCGETFQRMNLEKHDTEDCLHRMMTCLFCHDDYPFHQEQDHNKNCQYFPLCCEFCQNGNIPRCQMENHINQDCGKAPRKCEFAHLGCDEKIKLQDVQNHNELFQEHHMKLAIQEL--------------VRK--------DERLVTLQXXXXXXXXXXXXXXXXXXXXXDEIK*MGLSIAELSENSSNE-HKWKIFNFSYEI------SKAMTHFNHFLSKSFYTD-LGYHVQVDLY---PNINH-SNVVAIYIKTISGEYDETLRWPIPMTQFYIHLSSCDGCPCIANMHVNSHENMQTH---LALQRP--PHSNTGAGFLNQLSLADL-QKALINDTLILT 1145
            +H   C+F  ++C   C   FQ+ ++  H  +DC  R ++C  C     F  ++ H++NC    + CE+C N  + R QM NH + DC  AP  C F+  GC EK++   +  H +   + HM++  Q +              VR         + RLV    +   L  K           K  I+ +   +AE+     N  + WKI NF   +         + H     S  FYT   GY + + L+   P     +N +++++ T+ GEYD  L WP    Q  I L+  D     A +  N  E M      LA QRP  P +  G G++  + L  L Q+  I D  +L 
Sbjct:  150 DHQAHCEFALMDCPQ-CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYC-NTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIH-----SPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF---QGTIRLTILDQSE--APVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLV 495
The following BLAST results are available for this feature:
BLAST of TCONS_00052619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF62.063e-2027.09TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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