TCONS_00052621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052621
Unique NameTCONS_00052621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052621 ID=TCONS_00052621|Name=TCONS_00052621|organism=Clytia hemisphaerica|type=transcript|length=1534bp
CCAGAATAAAAATAAGGAATTAATGTAACTAATAAAAACAACATGGCGGA
GAACAAAGGAGGTTATGATGTTGAGTTTCTCCACGAACAATTTGATGATA
TGAAATGTTCAATTTGTCTTTTGATCTTACGAGAACCAATGCAAGCTGAT
GAATGTGGTCATAGGTTTTGCAAGTCTTGCGTTGTTAACATTGAAAAAAG
TGGTCAGAAGAAGTACATATGTCCTCAAGATCGAACCAAAATGACTCTCT
TCAGGGACAAAGGTCGTGAACGAGAGATTTTAAATCGTCCTGTAAAATGT
ATTCACCACAAAGAAGGATGTTGTTGGGCTAAAGCATTGAGAGAACTGGA
GTACCATACAAAAGAATGTGATTTCGAGGAAATGGTATGCCCTTTCAACG
ATTGTGGATATAAATTTCAAAGGAGGTTCTTGGCCAAACACAACAAAGAA
GATTGTTTATACAGAACGATGCTGTGTCCATTTTGCGACGAAGAGTATTC
TTTCCACCTAGAACAGgaccacatTGAAGATTGTGATTATTTACCAATTT
GTTGTGACTATTGCCAAGCCCGAGACATTCCAAGATATAAGATGGAGACC
CACTTAATCCAGAAATGTGCTAAAGCGCCAAGACAATGTGATTTTGCACA
TTTGGGCTGCGAAGAACAGATGCTGATGTATGACATTGCTAAGCATAACA
CAAATTTTTCTGACCAACACATCAATCTAGCTCTTCAGAAAATTTCTGTC
AAAGAAAACATTATTGAGACAATGCGTCAGGATAAAGAAGCTTTAAAAGA
ACAGAATAGTGACCAAGCAAAAGAAATCCAAAGATGGAAAGGTGAACTCC
AGAGGCAATATAAAGAACAATCAAATATCACAAAATCAGATTCCTTGAAA
TGGGAAATATCGGCTTTCACAAATGAATTAGCGAAAGCGACACAGTGGAA
AATGCATAATATCCAAAGTAAAAGCttttatacttcattgggaTATCACA
TTAAAGTTGAGCTTTATCCaaattttcgttttcaaaattctgTTGGTATA
TTTGTTCAAACTATCACTggtaaatttgataaagacttaAAATGGCCGAT
GGATAAAGCTCTGTTtcattttcacattttaaacaAAGATATTCGTTGGA
TTCACAGGCATACTCTAGAAACAACTGTATACGAAGCAGATATCAAAGGA
CCTCTTCAAAAACCTCCGCATACCTCTCATCCACTTGGTAGTCACAAGCT
TTTGAGTCATGCTGAATTTCCGACATTTCTCAAAGATGATACACTGTCTT
TGGTCATCAGTGTCGTAAAtgtaaaataaacttttaaaagttGATGTTCC
TCTAGAATTGAATACGATGTATTTTTCTTTCTGGTTTTATTTTCTTCTCA
GTATATTCTTTTCTATTTCATGTTTGGCTCCATATTTATACAACGCTTTT
CCTTACCTAGGACACCCCTTCATCCAGTCTTCTTCTTGCTATTCCAAATC
TCCACtcgaaattaaaaaagtaaataatttgCAG
Run BLAST on NCBI

transcript from alignment at scaffold_218:700563..704124+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052621 ID=TCONS_00052621|Name=TCONS_00052621|organism=Clytia hemisphaerica|type=transcript|length=3562bp|location=Sequence derived from alignment at scaffold_218:700563..704124+ (Clytia hemisphaerica)
CCAGAATAAAAATAAGGAATTAATGTAACTAATAAAAACAACATGGCGGA
GAACAAAGGAGGTTATGATGTTGAGTTTCTCCACGAACAATTTGATGATA
TGAAATGTTCAATTTGTCTTTTGATCTTACGAGAACCAATGCAAGCTGAT
GAATGTGGTCATAGGTTTTGCAAGTCTTGCGTTGTTAACATTGAAAAAAG
GTGATTAATATATTTGCAatctcaatgttttgattttgattagTTTTAGT
AGATCTACAATTTCTCGGCTGACTTTTTTTTATGATAAGATTTTCAATGc
atttgattttcttcttctttttctagcTGCCTTTATaagatataacattt
ttaattTATCTTATATATCACAACTTTTAGTGGTCAGAAGAAGTACATAT
GTCCTCAAGATCGAACCAAAATGACTGTAAGTATTATTGATTGTATCTGC
ACAGTTTTACCCCGCTCTCTCCTGATTTCCTATGGTCCAAAAAGGTCTTC
TATTCTGAAGAAGGGGTAGTAAGGAAGAGAGGGTTGCGACGAAGAATTAT
TTGTCAGGAGTCTGTCctttttttgtatcttttatctaaaattttaccaa
tttacaCTTGATTTACACTTCATTATCCGAATaagaaaattgttaaaatc
TTGTAATTTATAACTTATCaaacgtatttttttttttttttttctttcaa
agttcTTCAANTaagaaaattgttaaaatcTATTTTCTGTTTTTCCTTAT
GCAGCTCTTCAGGGACAAAGGTCGTGAACGAGAGATTTTAAATCGTCCTG
TAAAATGTATTCACCACAAAGAAGGATGTTGTTGGGCTAAAGCATTGAGA
GAACTGGAGGTGAATGAAATATGATCGCTGATATATTGTACTTACTCTCG
GTCATCTTGGTCATAAATATTACCTGAAAACAACTTTAGTTTTTTTAGGT
TGACGAGGGCTTAATTTATGGTTATTTGCAGAAATTTCTGATCTTTAAGG
ATTGTTAGAGATGTTTATAACTTTCAAGAAATAAAGATTATTTTGGGTCT
TGAGATTGCTTGTGATTGGTTGTCAGCcctttcacaaaatttagtaCAAA
TTTGACAGAGGGCAAAGTTGACAGAAAGCGTGCgtttttttagcaaaata
atAAAAGGCTCGAATAGCGATCGTTAAATTTCCCTAATGTAaagtatttc
tttattttttataaatttaaagCTTGAGTTCAAAGCACGATATTCCAACC
AAAATCCTTATGTAGATGGAATTGTTTTAATTTCGATTATTCTTTAGTAC
CATACAAAAGAATGTGATTTCGAGGAAATGGTATGCCCTTTCAACGATTG
TGGATATAAATTTCAAAGGAGGTTCTTGGCCAAACACAACAAAGAAGATT
GTTTATACAGAACGATGCTGTGTCCATTTTGCGACGAAGAGTATTCTTTC
CACCTAGAACAGGTAATTTCGTTTTTGTCAATCGTAAATACAGATTCTTA
AGTACAAAAGTATATGTATCTTGTGGCTTTCGGCGGAGCCAGAAATGATG
TAGCCTGACCCTTTTTCTATTTGCTGACACCTACGCTTGCTGACACGATC
GAAAGCTGGAGCCTACATTTAGCTCTCAGTTACTCACCACTCAGACCAGA
TTACCAATAATCTATGTTACTCATTCGCAGAGTTGGCGGTGACTAAATAT
GAAACCCACCATCCTTGAGTTTGGGAATAGTACCCAGCCACTGATTCTTA
AGTAAGGCTGACACTAGGTTTAAAGGGATTTGTCAGGTAGGTTGTCTTCt
aagctttctttttttttttaattatttttacctgaattttttttcaggac
cacatTGAAGATTGTGATTATTTACCAATTTGTTGTGACTATTGCCAAGC
CCGAGACATTCCAAGATATAAGGTATCTGATTTTTATTCTATTAACTTGT
TCTTTGTAGGGGGTAAACTCTTAGGATTTTTCTAAATTCACAATTATGTC
ACATGAATTATAAAGTTTGGAAAATTATATTTCAGATGGAGACCCACTTA
ATCCAGAAATGTGCTAAAGCGCCAAGACAATGTGATTTTGCACATTTGGG
CTGCGAAGAACAGGTTTTTAAAGatatatgattatttttttatcttttta
acatACTGTTCCTTGCTTAATTCCAGTTTAAGGTACTTTGAGGCCTCCTC
AATTAGGATAAACATTTATTTCTCACATTATTGCATGGAAACTTAAAGGT
CTTAGAAGGTTCCCTTTTGGagtaaaaacagaaaaaattcagCTAACTTC
TTCCATAAGGTAAAAAGAACTATAGCTGAAACAGGCTGAAATCAAGAGGC
ATCAAGTTCAGCACTAAaggataaaaaattattttttctttcttcttttt
tcatcttcattttctaaaagatttttgatttatttttcttagaatTTATA
ATGCACTAAATTATCTTTTCAGCTGTATATAATATGTTATAATTAAAGCA
TTGGTTGAAAATGGCAAGTGACACAAGGATTAGTACAAGCTTAAAGCGAA
TTGACTTTTAGTATAGGCATACCGGCATaagtttagtttttacaagGGGT
ACAACTTTAAAACATGTTATTTTCTTTGATAATCTCGTTATagtttaccc
ctaatgttataCTCTACTCATTTTTATCTCATTATTATTTTGTTTAGATG
CTGATGTATGACATTGCTAAGCATAACACAAATTTTTCTGACCAACACAT
CAATCTAGCTCTTCAGAAAATTTCTGTCAAAGAAAACATTATTGAGACAA
TGCGTCAGGATAAAGAAGCTTTAAAAGAACAGAATAGTGACCAAGCAAAA
GAAATCCAAAGATGGAAAGGTGAACTCCAGAGGCAATATAAAGAACAATC
AAATATCACAAAATCAGATTCCTTGAAATGGGAAATATCGGCTTTCACAA
ATGAATTAGCGAAAGCGACACAGTGGAAAATGCATAATATCCAAAGTAAA
AGCttttatacttcattgggaTATCACATTAAAGTTGAGCTTTATCCaaa
ttttcgttttcaaaattctgTTGGTATATTTGTTCAAACTATCACTggta
aatttgataaagacttaAAATGGCCGATGGATAAAGCTCTGTTtcatttt
cacattttaaacaAAGATATTCGTTGGATTCACAGGCATACTCTAGAAAC
AACTGTATACGAAGCAGATATCAAAGGACCTCTTCAAAAACCTCCGCATA
CCTCTCATCCACTTGGTAGTCACAAGCTTTTGAGTCATGCTGAATTTCCG
ACATTTCTCAAAGATGATACACTGTCTTTGGTCATCAGTGTCGTAAAtgt
aaaataaacttttaaaagttGATGTTCCTCTAGAATTGAATACGATGTAT
TTTTCTTTCTGGTTTTATTTTCTTCTCAGTATATTCTTTTCTATTTCATG
TTTGGCTCCATATTTATACAACGCTTTTCCTTACCTAGGACACCCCTTCA
TCCAGTCTTCTTCTTGCTATTCCAAATCTCCACtcgaaattaaaaaagta
aataatttgCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033261XLOC_033261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052621-exon-scaffold_218-1491911889:700563..700762TCONS_00052621-exon-scaffold_218-1491911889:700563..700762Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:700563..700762TCONS_00052621-exon-scaffold_218-1510915933:700563..700762Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:700563..700762TCONS_00052621-exon-scaffold_218-1575043694:700563..700762Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1491911889:700943..700988TCONS_00052621-exon-scaffold_218-1491911889:700943..700988Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:700943..700988TCONS_00052621-exon-scaffold_218-1510915933:700943..700988Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:700943..700988TCONS_00052621-exon-scaffold_218-1575043694:700943..700988Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1491911889:701317..701421TCONS_00052621-exon-scaffold_218-1491911889:701317..701421Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:701317..701421TCONS_00052621-exon-scaffold_218-1510915933:701317..701421Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:701317..701421TCONS_00052621-exon-scaffold_218-1575043694:701317..701421Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1491911889:701860..702024TCONS_00052621-exon-scaffold_218-1491911889:701860..702024Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:701860..702024TCONS_00052621-exon-scaffold_218-1510915933:701860..702024Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:701860..702024TCONS_00052621-exon-scaffold_218-1575043694:701860..702024Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1491911889:702410..702484TCONS_00052621-exon-scaffold_218-1491911889:702410..702484Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:702410..702484TCONS_00052621-exon-scaffold_218-1510915933:702410..702484Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:702410..702484TCONS_00052621-exon-scaffold_218-1575043694:702410..702484Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1491911889:702598..702675TCONS_00052621-exon-scaffold_218-1491911889:702598..702675Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:702598..702675TCONS_00052621-exon-scaffold_218-1510915933:702598..702675Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:702598..702675TCONS_00052621-exon-scaffold_218-1575043694:702598..702675Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1491911889:703260..704124TCONS_00052621-exon-scaffold_218-1491911889:703260..704124Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1510915933:703260..704124TCONS_00052621-exon-scaffold_218-1510915933:703260..704124Clytia hemisphaericaexon
TCONS_00052621-exon-scaffold_218-1575043694:703260..704124TCONS_00052621-exon-scaffold_218-1575043694:703260..704124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:700563..704124 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.72139	4.81917	1.34498	0.976075	0.329128	0.342401	0.610883	0.773463	0.601575	0.720601	0.0891648	0.5329	0.403212	0.477986	1.29071	1.16193	1.26888	1.38732	0.264429	0.256707	1.08366	1.15858	13.5481	11.6027	5.89098	5.49445	1.08893	0.798586	10.1921	11.1344
Blast
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BLAST of TCONS_00052621 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.412e-41
Identity = 138/459 (30.07%), Postives = 202/459 (44.01%), Query Frame = 1 
Query:   34 KNNMAENKGGYDVEFLHEQFDDMKCSICLLILREPMQADECGHRFCKSCVV-NIEKSGQKKYICPQDRTKMT---LFRDKGREREILNRPVKCIHHKEGCCWAKALRELEYHTKECDFEEMVCPFNDCGYKFQRRFLAKHNKEDCLYRTMLCPFCDEEYSFHLEQDHIEDCDYLPICCDYCQARDIPRYKMETHLIQKCAKAPRQCDFAHLGCEEQMLMYDIAKHNTNFSDQHINLALQK------------ISVKENIIETM--------RQDKE-----ALKEQNSDQAKEIQRWKGELQRQYKEQSNITKSDSLKWEISAFTNELAKATQWKMHNIQSKSFYTS-LGYHIKVELYPNF----RFQNSVGIFVQTITGKFDKDLKWPMDKALFHFHILNKDIRWIHRHTLETTVYEADIKGPLQKPPHTSHPLG-SHKLLSHAEF---PTFLKDDTL 1296
             ++  E   GYDVEF        +C ICL+ LRE +Q   CGHRFCK+C++ +I  +G K   CP D   +    LF D   +REIL+  VKC +  EGC     LR LE H   C+F  M CP   C   FQ+  +  H  +DC  R + C  C    +F  ++ H ++C    + C+YC    I R +M  H    C  AP  C F+  GC E+M    +A+H    +  H+ +  Q             IS   N  ET+        RQD +     A  E  S    E++R    L+ +  E      +    W+I  F   L    + K   I S  FYT   GY + + L+       R  N + +FV T+ G++D  L WP  +      IL++    + ++  E    + ++    Q+P    +P G  +    H E     TF+KDDTL
Sbjct:   46 SSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHK---CPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF-QGTIRLTILDQSEAPVRQNHEEIMDAKPELLA-FQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTL 493
The following BLAST results are available for this feature:
BLAST of TCONS_00052621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF67.412e-4130.07TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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