TCONS_00052631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052631
Unique NameTCONS_00052631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052631 ID=TCONS_00052631|Name=TCONS_00052631|organism=Clytia hemisphaerica|type=transcript|length=1320bp
atagagaaaaataaaaaaaacaaagtagaaaaaataagaaaagcaaCAAT
AAATAATGGTGGAGAAGATGTTGTCAGGTGGTTACGATGTTGAATTTGCC
ACTGTTTACCCTGAAGACAACGTAACTTGTGCAATATGTTTATTTATCCT
GCGAGAACCGATGCAAGCTATCGAATGTGGGCAcagattttgtaaaagct
gcGTAGCTGATTTGAAGAAAGGTGATAATGGAAAGCACATGTGTCCCGAA
GACAGGAGTGAGATGAATctttttcCCGACAAAGGTAAAGAGCGAGAAAT
TTTAGGAAGAGCAGTGAAGTGCACTAATGTTCGAAATGGTTGTTCTTCTG
TTCAAGAACTGCGCAATCTGGAGgATCACAAAGAACAATGCGACTTCAAA
ATCGTTAAATGTGTCGTTGAATCGTGTGCTGAGGAGTTTCAAAGGCGATA
CGAAGATCAGCACtacaaaaagtgcaaatacagaATGGTTCAATGCCCAT
TTTGCAACGAAgattatatttttgcttttgagGAGGAACACATTGACGAT
TGTGAAGAATTTTTGGAATGTTGTGATTATTGTTCCGATATTGATATCCC
AAGATCGAAGATGGACATTCACTTGTCAAAAGATTGCAAGAAGATCCCGC
TTTGTTGTCCATATGAGCCTCTTGGCTGCAAAGAAAAGATGCTTTTTAGT
GATCTTGAAAAACACGAGGTAATATCTACTCAACACCACTTGAAACTAGC
CATAAACAAAATTACGAACCAACAAGAACAAATTCAATTGCTGATGGATA
ACCAAAATCAATTGTTGGAAAGATTGAGTAAAGTGGAAGGCAAGTCGGAT
GCGATTCTTCTAATGAAAGATCAGCATATTTGGAGGATACCACGATTTTC
TGACGAAATACGAAAAGCCAAAAACCTAGGAAGACATCACacactttcaa
aattcatttaCACGTCAAAAGGTTACAGATTGGAATGTATTTTACAACCT
TATCAGCGATTATTTCAATCTGGTACCCTGCTTTCTTGCAGAACCACTGT
AGGAAGTTTTGACGAGTCTTTAACATGGCCTATGAACAAATTCATGATCA
CAAGTTGCATCATTGATCCACAAGGAATAGCGAGAGACAAAACCAGTGTT
ACTACTACAAACAGTCGTGCTTTCAAAAAACCACCACACTTGAATCCTGG
TGCAACATCATTTTTCATACCagatgaaaatgttgaaaaatacaCTTTTA
TTGGCATTCTTACAATCAAGATTCAGATCGCAGACGTGTAGACTTACAAA
TATTTTATTGTGAATCAACC
Run BLAST on NCBI

transcript from alignment at scaffold_218:718448..729120+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052631 ID=TCONS_00052631|Name=TCONS_00052631|organism=Clytia hemisphaerica|type=transcript|length=10673bp|location=Sequence derived from alignment at scaffold_218:718448..729120+ (Clytia hemisphaerica)
atagagaaaaataaaaaaaacaaagtagaaaaaataagaaaagcaaCAAT
AAATAATGGTGGAGAAGATGTTGTCAGGTGGTTACGATGTTGAATTTGCC
ACTGTTTACCCTGAAGACAACGTAACTTGTGCAATATGTTTATTTATCCT
GCGAGAACCGATGCAAGCTATCGAATGTGGGCAcagattttgtaaaagct
gcGTAGCTGATTTGAAGAAAGGGTAATAACTGATGTTGTTTTAGTGATTA
ACTTTTGAATTAGGAAAACATACCGGTCATGCTACTTAAACATGGTTTAC
AGGCTTTTTATGCTGGTTGCTTTAGAATGTCTCAGTTTGATAGATTTTCT
AAAAGTTTCTTCTGTATTGCTCTTTAACTTTTAATTTTCATGCGTTTTTC
TTTCAGTGATAATGGAAAGCACATGTGTCCCGAAGACAGGAGTGAGATGA
ATGtaaggtttttttcttttctccaaTTTGAAACCATGGCTGTTCTTTAC
CGGGTGAAGAGATAGCGGAGTGTCGTCCTTTAGATAGACCGATCACGTCc
cttgaatatttttgtcatatttttgtCCGTTTAGCAAAGAAGGAGAACTT
CAGATTCGCGTTAAGGGAACGATCACAAAATTCACATCCAATCCATAAAG
TTTGCAAATTCAATATTTGTCCGTAAAAAGACTGAAATTGGGCAAACATA
CTCTAGTAGTAGTGGTCGCAAATTCTGGACTATTTTTATGATGTTTCTGC
ATAGAAGATTACGGTATACAATTAAAATGATTATAATGAAATCCcacggg
ggtactagggttgcaagctgacggggggtgccgcccgactttcgaacttt
ggacccttaccgggactaaaaaggagaaaacaaaggNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTCCGGAA
TGAAATATAACGTAATGAAACTTCTACTATAGACCCTTTCTACTATAGAA
ATTTTCTCTACTACACAATTATCACTAACGTCtcttttctcaactttttt
ctttagctttttcCCGACAAAGGTAAAGAGCGAGAAATTTTAGGAAGAGC
AGTGAAGTGCACTAATGTTCGAAATGGTTGTTCTTCTGTTCAAGAACTGC
GCAATCTGGAGGTGATATATTTCACTTTTCAACTgtcaacatttgaaaaa
taattgaataaaaaCCGATTATAAAGCTATAGACCCTTTGAAGTTCCGAT
CATGACGTTGATTACATCATTGATTACCTTAATTCAATTTTACATAGGAT
CACAAAGAACAATGCGACTTTAAAATCGTTAAATGTGTCGTTGAATCGTG
TGCTGAGGAGTTTCAAAGGCGATACGAAGATCAGCACtacaaaaagtgca
aatacagaATGGTTCAATGCCCATTTTGCAACGAAGATTATATTTCCGCT
TTTGAGGAGGTTTGTTCGTAATGTTtcttaattttgtttttgtatttttc
cttGGTGCAAAGGATGGatgcaatttttgtgtttcgTTTTTCGAAACTCT
GTTAGCTAGCCATACAGTGACCATAAAGATGAATTGTAAATGGCCCCATA
ACTCAGAAAAGAACGATTAAAAGGAATTCCCTCTCCTTACTTGATTTAAT
TCAGGTTTAATGTTTTTCAGGAACACATCGAGGATTGTGAAGAATTTTTG
GAATGTTGTGATTTTTGTGACACCGTTGGTATACCAAGATCGAAGGTTAA
GTTTTGAAATTGATTCAGCCAATCTATCTAGATTTAGCTAACTGTTAATT
GGGTATTAATTGgcgtttttattattttcatataCATGAAATCAACAGTA
GTTATTCTCAATTGAGTGAGAAGGTGTGTTTGAAATCGCTTATGATCGCC
GTTGCCAAATCTTTTCTGGAACACCTTGCAAAATGTGTGTATGTGTGTTT
CAGCAAATAACAAAGTTATCAAGGAATCTAAGACGCATAAAACCCTTTCT
AGATGAACGACCATCTCACGAAAGCTTGTAAAAAGATTCCACATTCATGT
AAATTCGCTTCAATTGGTTGCCAAGAAAAGGTAACTtattttcttaagaa
agtgATTAAAGAAACTGTATAAGAAGAAACATATCAAGGTCCTTAAATGT
CACATCACTGAATTCTCAAAGCATTTTTACCGTGATTTCATTTATGGTAG
AGAAATTTCCATCGACAATCACATGTGTGTTTCCTAGGGTAAATTCGGAT
CTCTGTGGCACTTTTAGCCGAATAGAAAATATTATAGTGTCAAAAGTTCT
TCTGTCCAGACGTATTTTTCAATAACATGTGCTGATTTTCCGTGTAAAAC
TCAGTTTCCGTCTCagatgaaaaatatattgttgcTGAGATTAAGTTTGT
AAAGATTAATAGTAAATATGTAATTTAACTCTCTAATTCGCTTACTAGAT
GATCCTGGATAAACTGCGTAGTCATCAATCCATTGCAACTGAACATCACC
TTAATTTAGCTTTGGACAAAATCTGTGAACAGCAAGATGAAATAATATCT
TTGCGAAATTCGCAAACGAAGTTCTCCAATTTATTTAATCAGAGAGTAGG
TCTTTCACTAAAGGAAAATCATGTTTGGACAATATtaggttttgatgaaa
aacttaGATTGGCGAAACAACAATCTGATTATCTTGAATTAACGGAGGAC
TTTTACACGTCGCAAGGATACAAGTTAAATTGTTGCCTTGAATCTTCAAG
ACCTTTCACACCTGATAACGATGATTCAAAAAGACGTTGGTTTGCTTTAT
ATTTCTGCACCATAGAAGGCAATTTCGATGAGATTTTAAAATGGCCCCTT
GTAATGAGTATCGAACCTTCAATCGGAAACGATGAGAGAGACCTATTGAC
TTTAACGACTGAATTTCCGAAAAGTTTCGCAAAACCTCCGCATGGAGAAG
GTGGTTATGGCTATAAACAGTTTACATCAGAAGCTCAAATTATGAATGTC
ATAACCGACGGTACACTTACtataaacattaaaacaaaacaattatagAT
AAGAAGaggagaaaataatttttgaaaagtcaaacattttttgatgtttg
CTAAATCTTGGAAGTTATCAAAAGTGGATTCGATATTCATTCCATCAATA
TAATAGACGATAATTTGACGTATGCACTTTGTTAAAATGTGTCCTTCGAG
GACCCATGCAGGCTGTCGAATGTGGTTTTGGAAGAATTGTATATCGCAGT
TGAAGAAAGGAttataattttcaataaatttcgaAGATATTCTTTCAGAG
ATGTAGATGGAATCATGTTTAAAATTGAAGCAATctatggaataaaaatg
tcccaCGTGGATTCTTTTGTTAAACCACCCAATAACAGCGATAGCGGTAT
ACTATTTATAACACTCTTCAATATCTTTCGAAGAAATATTGACCTCAAAG
ATTATGCGAGATTATGGCATCACAAAGATTGTAAAGTACATACCTGTGAT
ACGTAATTGATGTGGTGGTCATTCTGTTTAATTGAATCGGTTTGTTTTCA
TTGCTTTCgatttagaaataaaaatactctTCTATAATTTCTGTCTTTAA
ATTTGTCTAGCACCTCAAAAGAGACCTATGTGTGTTGGTTTTGGTAGGGT
ATGAAAGTTGCATTCGGAATATATTTTCTCGGTTTAcacgtccgttcgtt
cgtccgtctgttaccagcttttctcaggattggctcattagtttttcctg
atttttggcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcc
cgatttcaaaaaaagaaatttgccggaaaaaaccggttttttggcatttt
ctcgagattttatcattagttttttctgattttttgctcaaagatgcgta
ttattAATGCCAAAAATGTGGTCGATTcggatttttgggaaaatattttt
tgctataTAACTTTCATCAGCAGGTTGGttcattcagcatctagcttgtt
aaaGGATGTTTCACACtgtttgatgaaatttcagTAGTGAATTGGAACAA
AtatccttctttttcttttaattggCCTGACCACTATATTTTGTATCCAA
ACGAAAATTTACTTTGTTTAGTTTAGTACGATATTTATAACAACAATTAC
TGTACCTAACTGTATTGCACAGATTCTAAACGATTCCATTCTATTATTGA
AATTATACAATTTTCATTTAGAAGAAATAACAAAAACGAAACTACTAAAA
TCAAATACCTTAAATACAATGAAAGGTGGATATGATGTTGAATTTATAAA
AGAGTATCCTGATGACAATGTGACATGCTCGATTTGTTTGTATGTTTTAC
GAGAACCTTTACAATCGATCGAATGTGGACACAGATTTTGCGAAAGCTGT
GTTGCTGATTTGACAAAATGGTAAATACTTTGATATGCCAAACATTAATT
AAGAACATGGCCATCGAAGTCAGGCGGCAGGTATCTGTAACTCTCCCTCT
CAGAGAAGGGTAGGCTACTCTAGAAGGAAAAAGCCATAGCTACCCCATTT
TCATTGTTGTTGAGAAGATGCTTATGTATTTGATTGAAAATACAAATTGG
CTAGTTTAACTAgaaatttgtgttttgtttttcagtGACAATGGAAAATA
TGTTTGTCCAGAAGACAGGAATGAGATGAGTGTGAGGatgcatttatttt
tttattaattttctgaTTCGAGCCTGAACGAGGAGTTCTATTTACTTCAA
ATTACTGAGAAAATCTAAttataaaaagtattttatGAGGGTTTCTCCTA
GACGGGAACTGGGAGTTAGTTCGAGGGCCTACTGTGAGTCCTATCGCGta
tacaattttcaaaagtgcAATCTCTCTTTTTATAGCTTTTTCCAGACAAA
GGAAAGGAGCGGGAGATTTTGGGAAGAACTGTCAAATGCCCGAATTCTAA
TGCTGGCTGTAGGATGACCCNAGACAAAGGAAAGGAGCGGGAGATTTTGG
GAAGAACTGTCAAATGCCCAAATTCTAATGCTGGATGTAGGTTGTGTTGC
GATATCTAAATGTAAGTTATgttcattatttttgttttgacattAGAGAG
TGGTTCTGTGGAAGATCAAGTCTATTTATGATTCTTCTATTCTACAgtac
agtagcgtagacagggtaGAAGGAACATTTACATAGGAGAGCAGAAGATT
GAAACGGCACAGTAATTATGTTTTTATACCACGAATAGGTAAGTGCTTTG
TCGTAAAAAACTACTCGTCTACGCAGATCGTTCGtcacccctgtctacgc
tactgtagGTAAGTAAGTTAACCTCAtctgattttacattttatttttta
aacacgAAGGAGCACGAAGAAAAATGTGACTTTAAAGTGGTTCAATGCGT
TGTTAGCGCATGCGCGGAAAGATTTCAACAACAATATGAAGACCAACATT
ACAAAGAATGTGAATACAGGATGATCCAATGTCCATTTTGCAAAGATGAT
TATATCATGGCCTTTGAGAGGGTAACTTGATTCCATTATTCTGTCACCAA
TAACGTAACGATCAAATTTCAGTGATATTCGTGATTGTGGTCGTGATGAT
TGCAAATAATTGGTGGGAGATTTGCCGATgtgtaacctgagatcagattg
tgaatgttttctgcacaccacgctgaagctctaaagggatgtgtgaaaac
ataacaatctgactaatatgcaatctcgaaatcgtaaggaccgcgtttgt
ctaaaaggactggggatgacaacaaagttgctcgattgtgtttatgaata
gggcgccgtatcagtttttgactttttggcgcacaacaagatttttgttg
taaaattttccgcggaaggactattttcctcagatgtataatgttcaagc
gccttcagaggtttaccgtgcgcgtaagaaaaggTTACCGATGTGGGTCT
CTTTAAAAAGCGCTTTTAGAAACTTAGCTTTGAGGTATATTTTGATGAGt
tttaaaatgatttcaatACTATTAACGGTCAACCTCGTTTCTAGGAACAT
ATCGAGAATTGTGAAGAATTCTTAGAATGTTGTGATTATTGTGATGTGAT
TGGCATACCAAGATCTCAGGTTTGTGACTTCATTAAATGCATTGTTTGTC
TACCTACCTGTATATTTCTTAATTTCGTTTTAGCTCACCTTCTTTGGGGT
AAAATGGTTACGGGTTATGGGTGTGATAAAAACTTTGAGTAGGCGACGGA
AGTTTTTCCCCATAAAACTTTGTTCAAGCGAGTTTTTGTACTACCATACT
GACTTTTCGATAGATATTTACACATagataggaaaatttcaaaatttgat
aaaaattgttGATAATGCATTTGTGTATTTGTAGATGAAAGCTCATTTAT
CTCAGGACTGCAATAAACTTCCACATGCATGTTTATTTACATCGATCGGA
TGCACAGAAAAGGTAATCCTTTTATTTATCCATGTGTACTCACGAAATGA
TTCAGACTGTAAAAGAAGACTATTGGAAAATATTATGCTTGCTTTAGCCT
TTCAGAATAAATGAATTTCGCCGGGAGGATTTTTTTATAGCAAACAAGAG
TTTCTTCCCAATTCGTCAAATCAATGAGGCTGAAACTAAAATGCGTTTCT
TTGTTTCAGAGCACGAAAGATAAATTGTCCAAACATCAATCAAACTCTAC
AGAGCATCATCTTCGTTTAGCATTGGCAAAGATCACAGCTCAAGATCAGA
CAAATTGTAACCTACAGCGAGATATTGGTACACTCCTAAGTTCACATAAA
AAGCTCTTAGATTCACAAATTGCACTTCAAACCTCATACGCCGCGCTTAA
ACGTTCACATTTCCAACTTCAAGAAAAAGTCAACAATCTGACAAATCAGA
ATGGTATCTGGGAAATTCATGGCTTTAATAACAAAATGAAACACAACAAA
AGTATTTATTACTCCCTGAAAAAACACATCTATACCACAGAGGGATATAA
GCTACTTTGTACCTTATATCCAAAAGGAACAGTAGACGAAAGATGTAGGC
TTTATATGCGAACTGAAAAAGGTGCTTTTGATGATAAGCTAATTTGGCCC
ATGAGGGTTGACATTAAATGCGTTCTTATCGCGAATGAAGCTACCAGAGA
TAGAGAATGGATCATAAGAACACACATTAATAACATGGATGGCAGTTTTA
ACAAACCACCTCATGGGAACGATGGTTTGAAAACAAGATTGATAACACTT
GGAGATTTACCTGAATTCCTTTCCGATGGGACATTAACTTTAAGGATCAC
TTCCATGGGATGATTTTGACCTATGTTTCGATTTAATGATGTTTTCAGCA
AGGTTGTTTGCTTTCTAatgcaccttttcgaccgtagtcgcgcggtcagg
cgcgtgccgctttattatttaatttaccaccctagaCTCGATCCTTtcct
ttttttctattgtctttaggtgcgaaaaaagactgggacggttttaaggt
ggtaaaacggacaagaaaatgcccgcgcggcaattggcggctacggtcga
taAGGTGTATTGTTTGTTAAtattcataatttcaaagttatttATTGTTG
TACAGTAGGATGATTATTTAGATTTATATAAATAGTTTATTTTGTCTCAT
GTTCGATTATTCAAGTTGGAAAGATATTGTCTACGTAAGACTTTTGGAAT
CAGTAATAAATCTATAAATTAATTGATTACCATTGCTTTTTTATTCAGAA
AGTAAAGACAATTGACTaagatagaaaataaaaatgacaaaaggtgGTTA
TGATGTTGAATTGGTGAATGGTGAACTGGAGAATGATATCACGTGTTCAA
TCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCATAGAATGTGGACAT
CGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAGGGGTAATGATGACA
GCGTAGAATACTAGACTGATATTATTATCGTAATTGCAAAGACTTTGAAA
TATTACATCACTAAAAGAGTTGGTGATCGGATTTTGGTATTCCCTACGCC
ATGATGAATCTTATGTATTATTATTGCAAAATATCATTAGGGAAGATATT
TGATTTGGGGTCATTTTGTGTgatcattttgttgtttttttatttagtgT
TAATGGTAGTTATGTTTGCCCAGAAGATCGTGCTGAAACGGCTGTAAGTT
CACAAAGACATATTTTTAACTTAACCTTTAATCCTATCTTATTACCATGG
Tgtctgtgaattttttttataagaatactttggctgagggtgagcattat
tcttatttttctattactCAAAACAATACAGTAGGCCTATTGTTCTAATT
gaaccctgatattcttattcttataaaacagAAGTGTGTATGAGAAATCT
TGAAAGCAGACCGACCAGTTAATTTAccaattttttcataaatttaaaTA
CTACAAACACTTTTCGCAAACCTTTTTCAGTTTTATCCAGATAAAGGAAG
AGGTCGTGAAATTTTGGGTTTTGCAGTCAGATGCTCAAACAAAATGCTTG
GTTGTCCATGGGTGAAAGAATTGCGTGAAGTAGAGGTAGTAAAAGAATTG
CGTGAAGTAGAGGTAGTAAAAGTTACTTTTTTTGGTCTCTAATTCCTTCC
ATTGagctttttttatcaaaaatatagtttttgctttttggaaattttta
ggATCACAAAGAACAATGCGACTTCAAAATCGTTAAATGTGTCGTTGAAT
CGTGTGCTGAGGAGTTTCAAAGGCGATACGAAGATCAGCACtacaaaaag
tgcaaatacagaATGGTTCAATGCCCATTTTGCAACGAAgattatatttt
tgcttttgagGAGGTATACTCTTGTTGATTTACCTCAGTTAGGTTGACAT
GTTTTTGACTACAGTATATCTATTATGtttaatgaatgaatgaatgaatg
aatgaatgaatgaatgaatgaatgaatggatgaatgaatgaatgaatgaa
tgaatgaatgaatgaatgaatgaatgaagaaTGAATGAACTTTTAGGAAC
ACATTGACGATTGTGAAGAATTTTTGGAATGTTGTGATTATTGTTCCGAT
ATTGATATCCCAAGATCGAAGGTAATATAATTATTCTGACAAATTCATTG
GAATTAAGCTTCACTTGTTACTTTGGGGCTGTGGAAATCTAAAATCGTGa
attaaatacaaaatagtaaaaattaAAACACTTTATCATTATGTTtaaag
tttatatcaactttAGATGGACATTCACTTGTCAAAAGATTGCAAGAAGA
TCCCGCTTTGTTGTCCATATGAGCCTCTTGGCTGCAAAGAAAAGGTGAGA
TTAAACTTCAGGCTACTGTTGTAACTCAATGTCTTGCTTTCTGTGGACTT
CATTCCAACTTTATTATTCAAATTCTGCATTTTTCTTCTAGATGCTTTTT
AGTGATCTTGAAAAACACGAGGTAATATCTACTCAACACCACTTGAAACT
AGCCATAAACAAAATTACGAACCAACAAGAACAAATTCAATTGCTGATGG
ATAACCAAAATCAATTGTTGGAAAGATTGAGTAAAGTGGAAGGCAAGTCG
GATGCGATTCTTCTAATGAAAGATCAGCATATTTGGAGGATACCACGATT
TTCTGACGAAATACGAAAAGCCAAAAACCTAGGAAGACATCACacacttt
caaaattcatttaCACGTCAAAAGGTTACAGATTGGAATGTATTTTACAA
CCTTATCAGCGATTATTTCAATCTGGTACCCTGCTTTCTTGCAGAACCAC
TGTAGGAAGTTTTGACGAGTCTTTAACATGGCCTATGAACAAATTCATGA
TCACAAGTTGCATCATTGATCCACAAGGAATAGCGAGAGACAAAACCAGT
GTTACTACTACAAACAGTCGTGCTTTCAAAAAACCACCACACTTGAATCC
TGGTGCAACATCATTTTTCATACCagatgaaaatgttgaaaaatacaCTT
TTATTGGCATTCTTACAATCAAGATTCAGATCGCAGACGTGTAGACTTAC
AAATATTTTATTGTGAATCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033263XLOC_033263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052631-exon-scaffold_218-1491911889:718448..718669TCONS_00052631-exon-scaffold_218-1491911889:718448..718669Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:718448..718669TCONS_00052631-exon-scaffold_218-1510915933:718448..718669Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:718448..718669TCONS_00052631-exon-scaffold_218-1575043694:718448..718669Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1491911889:718854..718899TCONS_00052631-exon-scaffold_218-1491911889:718854..718899Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:718854..718899TCONS_00052631-exon-scaffold_218-1510915933:718854..718899Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:718854..718899TCONS_00052631-exon-scaffold_218-1575043694:718854..718899Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1491911889:720104..720208TCONS_00052631-exon-scaffold_218-1491911889:720104..720208Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:720104..720208TCONS_00052631-exon-scaffold_218-1510915933:720104..720208Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:720104..720208TCONS_00052631-exon-scaffold_218-1575043694:720104..720208Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1491911889:727749..727910TCONS_00052631-exon-scaffold_218-1491911889:727749..727910Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:727749..727910TCONS_00052631-exon-scaffold_218-1510915933:727749..727910Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:727749..727910TCONS_00052631-exon-scaffold_218-1575043694:727749..727910Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1491911889:728094..728168TCONS_00052631-exon-scaffold_218-1491911889:728094..728168Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:728094..728168TCONS_00052631-exon-scaffold_218-1510915933:728094..728168Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:728094..728168TCONS_00052631-exon-scaffold_218-1575043694:728094..728168Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1491911889:728314..728391TCONS_00052631-exon-scaffold_218-1491911889:728314..728391Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:728314..728391TCONS_00052631-exon-scaffold_218-1510915933:728314..728391Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:728314..728391TCONS_00052631-exon-scaffold_218-1575043694:728314..728391Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1491911889:728489..729120TCONS_00052631-exon-scaffold_218-1491911889:728489..729120Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1510915933:728489..729120TCONS_00052631-exon-scaffold_218-1510915933:728489..729120Clytia hemisphaericaexon
TCONS_00052631-exon-scaffold_218-1575043694:728489..729120TCONS_00052631-exon-scaffold_218-1575043694:728489..729120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:718448..729120 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289362	1.33263	0.128268	0.69463	0	0	0.204857	0	0.0742245	0	0	0.0850041	0	0.781222	0.336205	0.575401	0.377784	0.746274	0.266696	0.0681224	0	0.0493533	0.818961	1.54259	0.551889	0	0.0862711	0.512678	1.49695	1.66392
Blast
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BLAST of TCONS_00052631 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.375e-38
Identity = 139/445 (31.24%), Postives = 196/445 (44.04%), Query Frame = 2 
Query:   80 GYDVEFATVYPEDNVTCAICLFILREPMQAIECGHRFCKSCVADLKKGDNGKHMCPEDRS---EMNLFPDKGKEREILGRAVKCTNVRNGCSSVQELRNLEDHKEQCDFKIVKCVVESCAEEFQRRYEDQH-YKKCKYRMVQCPFCNEDYIFAFEEEHIDDCEEFLECCDYCSDIDIPRSKMDIHLSKDCKKIPLCCPYEPLGCKEKMLFSDLEKHEVISTQHHLKLA---------------INKITNQQEQI-QL---LMDNQNQLLERLSKVEGKS--------------DAILLMKDQ-----HIWRIPRFSDEIRKAKNLGRHHTLSKFIYTSK-GY----RLECILQPYQRLFQSGTLLSCRTTVGSFDESLTWPMNKFMITSCIIDPQGIARDKTSVTTTNSR----AFKKPP-HLNPGATSF--FIPDENVEKYTFI 1252
            GYDVEF     E    C ICL  LRE +Q   CGHRFCK+C+  +K   +  H CP D     E  LFPD   +REIL   VKC N   GC    ELR+LEDH+  C+F ++ C    C   FQ+ + + H  K C  R V C  C     F  +E H  +C      C+YC+ I I R +M  H   DC   P+ C +   GC EKM  + L +H   +TQ H+++                I+++ N QE I QL   L+   +Q+ E  +K+E +S              D +  ++ Q     +IW+I  F   ++  +        S   YT K GY    RL   L   QR     +L    T  G +D  L WP     I   I+D       +      +++    AF++P    NP    +  F+  E + + TFI
Sbjct:   55 GYDVEFDPPL-ESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLF-VHTMQGEYDSHLPWPFQG-TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFI 488
The following BLAST results are available for this feature:
BLAST of TCONS_00052631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF63.375e-3831.24TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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